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Flexible model of water based on the dielectric and electromagnetic spectrum properties : TIP4P/$epsilon$ Flex. 基于介电和电磁频谱特性的水的柔性模型:TIP4P/$epsilon$ Flex。
Pub Date : 2020-12-08 DOI: 10.1016/J.MOLLIQ.2021.116770
Ra'ul Fuentes-Azcatl
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引用次数: 6
Characterization of a Modular Flow Cell System for Electrocatalytic Experiments and Comparison to a Commercial RRDE System 电催化实验用模块化流动电池系统的表征及与商用RRDE系统的比较
Pub Date : 2020-11-30 DOI: 10.26434/chemrxiv.13308458
F. Stender, Keisuke Obata, Max Baumung, F. Abdi, M. Risch
Generator-collectorexperiments offer insights into the mechanisms of electrochemical reactions bycorrelating the product and generator currents. Most commonly, theseexperiments are performed using a rotating ring-disk electrode (RRDE). Wedeveloped a double electrode flow cell (DEFC) with exchangeable generator anddetector electrodes where the electrode width equals the channel width.Commonalities and differences between the RRDE and DEFC are discussed based onanalytical solutions, numerical simulations and measurements of theferri-/ferrocyanide redox couple on Pt electrodes in a potassium chlorideelectrolyte. The analytical solutions agree with the measurements usingelectrode widths of 5 and 2 mm. Yet, we find an unexpected dependence on theexponent of the width so that wider electrodes cannot be analysed using theconventional analytical solution. In contrast, all the investigated electrodesshow a collection efficiency of close to 35.4% above a minimum rotation speedor flow rate, where the narrowest electrode is most accurate at the cost ofprecision and the widest electrode the least accurate but most precise. OurDEFC with exchangeable electrodes is an attractive alternative to commercial RRDEsdue to the flexibility to optimize the electrode materials and geometry for thedesired reaction.
发电机-收集器实验通过将产物和发电机电流相关联,提供了对电化学反应机制的见解。最常见的是,这些实验是使用旋转环盘电极(RRDE)进行的。我们开发了一种双电极流动电池(DEFC),具有可交换的发生器和检测器电极,电极宽度等于通道宽度。基于解析解、数值模拟和在氯酸钾电解液中铂电极上铁-/亚铁氰化物氧化还原对的测量,讨论了RRDE和DEFC的共同点和不同点。解析解与使用5和2毫米电极宽度的测量结果一致。然而,我们发现一个意想不到的依赖于宽度的指数,所以更宽的电极不能使用传统的分析解决方案进行分析。相比之下,所有被研究的电极在最小旋转速度或流量以上显示出接近35.4%的收集效率,其中最窄的电极以精度为代价最精确,最宽的电极最不精确,但最精确。我们的defc与可交换电极是一个有吸引力的替代商业rrdesi由于灵活性,优化电极材料和所需的反应几何形状。
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引用次数: 0
Predicting Gas-Particle Partitioning Coefficients of AtmosphericMolecules with Machine Learning 用机器学习预测大气分子的气粒分配系数
Pub Date : 2020-10-27 DOI: 10.5194/ACP-2020-1258
Emma Lumiaro, M. Todorovi'c, T. Kurtén, H. Vehkamäki, P. Rinke
Abstract. The formation, properties and lifetime of secondary organic aerosols in the atmosphere are largely determined by gas-particle partitioning coefficients of the participating organic vapours. Since these coefficients are often difficult to measure and to compute, we developed a machine learning model to predict them given molecular structure as input. Our data-driven approach is based on the dataset by Wang et al. (Atmos. Chem. Phys., 17, 7529 (2017)), who computed the partitioning coefficients and saturation vapour pressures of 3414 atmospheric oxidation products from the master chemical mechanism using the COSMOtherm program. We trained a kernel ridge regression (KRR) machine learning model on the saturation vapour pressure (Psat), and on two equilibrium partitioning coefficients: between a water-insoluble organic matter phase and the gas phase (KWIOM/G), and between an infinitely dilute solution with pure water and the gas phase (KW/G). For the input representation of the atomic structure of each organic molecule to the machine, we tested different descriptors. We find that the many-body tensor representation (MBTR) works best for our application, but the topological fingerprint (TopFP) approach is almost as good, and is significantly more cost effective. Our best machine learning model (KRR with a Gaussian kernel + MBTR) predicts Psat and KWIOM/G to within 0.3 logarithmic units and KW/G to within 0.4 logarithmic units of the original COSMOtherm calculations. This is equal or better than the typical accuracy of COSMOtherm predictions compared to experimental data (where available). We then applied our machine learning model to a dataset of 35,383 molecules that we generated based on a carbon 10 backbone functionalized with 0 to 6 carboxyl, carbonyl or hydroxyl groups to evaluate its performance for polyfunctional compounds with potentially low Psat. The resulting saturation vapor pressure and partitioning coefficient distributions were physico-chemically reasonable, and the volatility predictions for the most highly oxidized compounds were in qualitative agreement with experimentally inferred volatilities of atmospheric oxidation products with similar elemental composition.
摘要大气中二次有机气溶胶的形成、性质和寿命在很大程度上取决于参与的有机蒸汽的气粒分配系数。由于这些系数通常难以测量和计算,我们开发了一个机器学习模型,以分子结构作为输入来预测它们。我们的数据驱动方法基于Wang等人的数据集。化学。理论物理。利用COSMOtherm程序计算了主化学机制中3414种大气氧化产物的分配系数和饱和蒸汽压。我们在饱和蒸汽压(Psat)和两个平衡分配系数上训练了一个核脊回归(KRR)机器学习模型:水不溶性有机物相和气相之间的平衡分配系数(KWIOM/G),以及无限稀释纯水溶液和气相之间的平衡分配系数(KW/G)。对于每个有机分子的原子结构的输入表示,我们测试了不同的描述符。我们发现多体张量表示(MBTR)最适合我们的应用,但拓扑指纹(TopFP)方法几乎同样好,而且成本效益显著提高。我们最好的机器学习模型(带有高斯核的KRR + MBTR)预测Psat和KWIOM/G在原始COSMOtherm计算的0.3个对数单位内,KW/G在0.4个对数单位内。与实验数据相比,这等于或优于宇宙热预测的典型准确性(如果有的话)。然后,我们将我们的机器学习模型应用于35,383个分子的数据集,这些分子是基于碳10骨架被0到6个羧基、羰基或羟基功能化而生成的,以评估其对具有潜在低Psat的多功能化合物的性能。得到的饱和蒸汽压和分配系数分布在物理化学上是合理的,对大多数高度氧化化合物的挥发性预测与实验推断的具有相似元素组成的大气氧化产物的挥发性在定性上是一致的。
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引用次数: 3
Electron-stimulated desorption from molecular ices in the 0.15–2 keV regime 0.15-2 keV状态下分子冰的电子刺激解吸
Pub Date : 2020-10-19 DOI: 10.1063/5.0021832
R. Dupuy, M. Haubner, B. Henrist, J. Fillion, V. Baglin
Electron-stimulated desorption (ESD) of cryosorbed molecules on surfaces is a process of relevance to fields as varied as vacuum dynamics in accelerators and astrochemistry. While desorption from such molecular systems induced by keV electrons and fast ions has been extensively studied, the sub-keV electron regime is comparatively little known. We measured and quantified electron-stimulated desorption from molecular ice systems (layers of N$_2$, CO, CO$_2$, Ar and H$_2$O/D$_2$O condensed at cryogenic temperatures) in the 150-2000 eV electron energy range. In this regime stopping power is no longer sufficient to explain the electron energy dependence of ESD yields. We introduce the notion of desorption-relevant depth, which characterizes the transition between two energy deposition regimes near the surface. We then apply this notion to the different systems, showing how ESD in the sub-keV regime can for example reveal the differences in species diffusion in crystalline and porous amorphous CO$_2$ ices.
表面冷冻吸附分子的电子刺激解吸(ESD)是一个与加速器真空动力学和天体化学等领域相关的过程。虽然由keV电子和快离子诱导的分子系统的脱附已经被广泛研究,但亚keV电子的机制相对来说鲜为人知。在150 ~ 2000 eV的电子能范围内,对分子冰体系(N$_2$, CO$_2$, CO$_2$, Ar $和H$_2$O/D$_2$O)的电子激发解吸进行了测量和量化。在这种情况下,停止功率不再足以解释ESD产量的电子能量依赖性。我们引入了解吸相关深度的概念,它表征了地表附近两种能量沉积机制之间的转变。然后,我们将这一概念应用于不同的系统,展示了亚kev状态下的ESD如何揭示晶体和多孔非晶CO$_2$冰中物质扩散的差异。
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引用次数: 6
(15‐crown‐5)BiI 3 as a Building Block for Halogen Bonded Supramolecular Aggregates (15‐crown‐5)bii3作为卤素键合超分子聚集体的构建块
Pub Date : 2020-10-09 DOI: 10.1002/zaac.202000422
Bettina Wagner, Johanna Heine
We present the synthesis and characterization of (15-crown-5)BiI$_3$ (1) and (15-crown-5)BiI$_3$*0.5TIE (2), a halogen bonded adduct with tetraiodoethylene (TIE), a typical halogen bond donor. Our results show that crown ether complexes of main group metal halides can be employed as halogen bond acceptors for the synthesis of new supramolecular aggregates and highlight the significant interaction between the two building blocks.
本文报道了卤素键给体四乙烯(TIE)的卤素键加合物(15-crown-5)BiI$_3$(1)和(15-crown-5)BiI$_3$*0.5TIE(2)的合成和表征。我们的研究结果表明,主基团金属卤化物的冠醚配合物可以作为卤素键受体用于合成新的超分子聚集体,并突出了两种构建块之间的重要相互作用。
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引用次数: 2
Predicting activation energies for vacancy-mediated diffusion in alloys using a transition-state cluster expansion 利用过渡态团簇膨胀预测合金中空位介导扩散的活化能
Pub Date : 2020-09-25 DOI: 10.1103/PHYSREVMATERIALS.5.013803
Chenyang Li, T. Nilson, Liang Cao, Tim Mueller
Kinetic Monte Carlo models parameterized by first principles calculations are widely used to simulate atomic diffusion. However, accurately predicting the activation energies for diffusion in substitutional alloys remains challenging due to the wide variety of local environments that may exist around the diffusing atom. We address this challenge using a cluster expansion model that explicitly includes a sublattice of sites representing transition states and assess its accuracy in comparison with other models, such as the broken bond model and a model related to Marcus theory, by modeling vacancy-mediated diffusion in Pt-Ni nanoparticles. We find that the prediction error of the cluster expansion is similar to that of other models for small training sets, but with larger training sets the cluster expansion has a significantly lower prediction error than the other models with comparable execution speed. Of the simpler models, the model related to Marcus theory yields predictions of nanoparticle evolution that are most similar to those of the cluster expansion, and a weighted average of the two approaches has the lowest prediction error for activation energies across all training set sizes.
由第一性原理计算参数化的动力学蒙特卡罗模型被广泛用于模拟原子扩散。然而,由于扩散原子周围可能存在各种各样的局部环境,准确预测替代合金中扩散的活化能仍然具有挑战性。我们使用了一个簇扩展模型来解决这一挑战,该模型明确包含了一个代表过渡态的子格子,并通过模拟Pt-Ni纳米颗粒中空位介导的扩散,与其他模型(如断键模型和马库斯理论相关的模型)进行了比较,评估了其准确性。我们发现,对于较小的训练集,聚类扩展的预测误差与其他模型相似,但对于较大的训练集,在执行速度相当的情况下,聚类扩展的预测误差明显低于其他模型。在较简单的模型中,与马库斯理论相关的模型产生的纳米粒子演化预测与簇扩张预测最相似,两种方法的加权平均值在所有训练集大小上的活化能预测误差最小。
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引用次数: 5
Energy difference between the lowest doublet and quartet states of the boron atom 硼原子最低重态和四重态之间的能量差
Pub Date : 2020-09-18 DOI: 10.1103/physreva.102.052806
K. Strasburger
The energies of the lowest $^2P_u$, $^4P_g$ and $2D_g$ states of the boron atom are calculated with $mu$hartree accuracy, in the basis of symmetrized, explicitly correlated Gaussian lobe functions. Finite nuclear mass and scalar relativistic corrections are taken into account. This study contributes to the problem of the energy differences between doublet and quartet states of boron, which have not been measured to date. It is found that the $^2P_urightarrow^4P_g$ excitation energy, recommended in the Atomic Spectra Database, appears underestimated by more than 300~cm$^{-1}$.
在对称的、显式相关的高斯波瓣函数的基础上,以$mu$哈特里精度计算了硼原子的最低能级$^2P_u$、$^4P_g$和$2D_g$的能量。考虑了有限核质量和标量相对论修正。这项研究有助于解决硼的重态和四重奏态之间的能量差异问题,这是迄今为止尚未测量到的。发现原子光谱数据库中推荐的$^2P_urightarrow^4P_g$激发能似乎低估了300多cm $^{-1}$。
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引用次数: 0
Structured eigenvalue problems in electronic structure methods from a unified perspective 统一视角下电子结构方法中的结构化特征值问题
Pub Date : 2020-09-02 DOI: 10.1063/1674-0068/cjcp2107119
Zhendong Li
In (relativistic) electronic structure methods, the quaternion matrix eigenvalue problem and the linear response (Bethe-Salpeter) eigenvalue problem for excitation energies are two frequently encountered structured eigenvalue problems. While the former problem was thoroughly studied, the later problem in its most general form, namely, the complex case without assuming the positive definiteness of the electronic Hessian, is not fully understood. In view of their very similar mathematical structures, we examined these two problems from a unified point of view. We showed that the identification of Lie group structures for their eigenvectors provides a framework to design diagonalization algorithms as well as numerical optimizations techniques on the corresponding manifolds. By using the same reduction algorithm for the quaternion matrix eigenvalue problem, we provided a necessary and sufficient condition to characterize the different scenarios, where the eigenvalues of the original linear response eigenvalue problem are real, purely imaginary, or complex. The result can be viewed as a natural generalization of the well-known condition for the real matrix case.
在(相对论)电子结构方法中,四元数矩阵特征值问题和激发能的线性响应(Bethe-Salpeter)特征值问题是两个经常遇到的结构化特征值问题。虽然前一个问题被彻底研究了,但后一个问题在其最一般的形式下,即没有假设电子黑森的正确定性的复杂情况,并没有被完全理解。鉴于这两个问题的数学结构非常相似,我们从一个统一的观点来考察它们。我们证明了李群结构特征向量的识别为设计对角化算法以及相应流形上的数值优化技术提供了一个框架。通过对四元数矩阵特征值问题使用相同的约简算法,我们提供了表征原始线性响应特征值问题的特征值为实、纯虚或复的不同情形的充分必要条件。结果可以看作是对实矩阵情况的一个众所周知的条件的自然推广。
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引用次数: 0
Measuring transient reaction rates from non-stationary catalysts 测量非固定催化剂的瞬态反应速率
Pub Date : 2020-08-31 DOI: 10.1021/acscatal.0c03773.s001
D. Borodin, K. Golibrzuch, M. Schwarzer, Jan Fingerhut, Georgios Skoulatakis, D. Schwarzer, T. Seelemann, T. Kitsopoulos, A. Wodtke
Up to now, the methods available for measuring the rate constants of reactions taking place on heterogeneous catalysts require that the catalyst be stable over long measurement times. But catalyst are often non-stationary, they may become activated under reaction conditions or become poisoned through use. It is therefore desirable to develop methods with high data acquisition rates for kinetics, so that transient rates can be measured on non-stationary catalysts. In this work, we present velocity resolved kinetics using high repetition rate pulsed laser ionization and high-speed ion imaging detection. The reaction is initiated by molecular beam pulses incident at the surface and the product formation rate is observed by a sequence of laser pulses at a high repetition rate. Ion imaging provides the desorbing product flux (reaction rate) as a function of reaction time for each laser pulse. We demonstrate the method using a 10 Hz pulsed CO molecular beam pulse train to initiate CO desorption from Pd(332) - desorbing CO is detected every millisecond by non-resonant multiphoton ionization using a 1-kHz Ti:Sapphire laser. This approach overcomes the time-consuming scanning of the delay between CO and laser pulses needed in past experiments and delivers a data acquisition rate that is 10-1000 times higher. We also apply this method to CO oxidation on Pd(332) - we record kinetic traces of CO$_2$ formation while a CO beam titrates oxygen atoms from an O-saturated surface. This provides the reaction rate as a function of O-coverage in a single experiment. We exploit this to produce controlled yet inhomogeneously mixed reactant samples for measurements of reaction rates under diffusion-controlled conditions.
到目前为止,用于测量非均相催化剂反应速率常数的方法都要求催化剂在较长的测量时间内保持稳定。但催化剂往往是不稳定的,它们可能在反应条件下被活化或在使用中中毒。因此,需要开发具有高数据采集速率的动力学方法,以便可以在非固定催化剂上测量瞬态速率。在这项工作中,我们提出了使用高重复率脉冲激光电离和高速离子成像检测的速度分辨动力学。反应由入射于表面的分子束脉冲引发,产物形成速率由高重复率的激光脉冲序列观察。离子成像提供了解吸产物通量(反应速率)作为每个激光脉冲反应时间的函数。我们演示了使用10 Hz脉冲CO分子束脉冲序列来引发Pd(332)的CO解吸的方法-通过使用1 khz Ti:Sapphire激光器进行非谐振多光子电离,每毫秒检测一次解吸CO。这种方法克服了过去实验中需要的CO和激光脉冲之间延迟的耗时扫描,并提供了高10-1000倍的数据采集速率。我们还将这种方法应用于Pd(332)上的CO氧化——我们记录了CO$_2$形成的动力学痕迹,同时CO束从o饱和表面滴定氧原子。这提供了单次实验中反应速率作为o覆盖的函数。我们利用这一点来生产受控但不均匀混合的反应物样品,用于在扩散控制条件下测量反应速率。
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引用次数: 1
Exploring photoelectron angular distributions emitted from molecular dimers by two delayed intense laser pulses 用两个延迟强激光脉冲研究分子二聚体发射的光电子角分布
Pub Date : 2020-08-06 DOI: 10.1103/physreva.102.053115
V. Hanus, S. Kangaparambil, S. Larimian, Martin Dorner-Kirchner, Xinhua Xie, A. Baltuvska, Markus Kitzler-Zeiler
We describe the results of experiments and simulations performed with the aim of extending photoelectron spectroscopy with intense laser pulses to the case of molecular compounds. Dimer frame photoelectron angular distributions generated by double ionization of N$_2$-N$_2$ and N$_2$-O$_2$ van der Waals dimers with ultrashort, intense laser pulses are measured using four-body coincidence imaging with a reaction microscope. To study the influence of the first-generated molecular ion on the ionization behavior of the remaining neutral molecule we employ a two-pulse sequence comprising of a linearly polarized and a delayed elliptically polarized laser pulse that allows distinguishing the two ionization steps. By analysis of the obtained electron momentum distributions we show that scattering of the photoelectron on the neighbouring molecular potential leads to a deformation and rotation of the photoelectron angular distribution as compared to that measured for an isolated molecule. Based on this result we demonstrate that the electron momentum space in the dimer case can be separated, allowing to extract information about the ionization pathway from the photoelectron angular distributions. Our work, when implemented with variable pulse delay, opens up the possibility of investigating light-induced electronic dynamics in molecular dimers using angularly resolved photoelectron spectroscopy with intense laser pulses.
我们描述了实验和模拟的结果,目的是将强激光脉冲光电子能谱扩展到分子化合物的情况。用四体符合成像反应显微镜测量了N$_2$-N$_2$和N$_2$-O$_2$范德华二聚体在超短强激光脉冲下双电离产生的二聚体框架光电子角分布。为了研究第一次产生的分子离子对剩余中性分子电离行为的影响,我们采用了由线性偏振和延迟椭圆偏振激光脉冲组成的双脉冲序列,以便区分两个电离步骤。通过分析得到的电子动量分布,我们表明光电子在邻近分子电位上的散射导致光电子角分布的变形和旋转,与孤立分子的测量结果相比。基于这一结果,我们证明了二聚体的电子动量空间可以被分离,从而可以从光电子角分布中提取有关电离途径的信息。我们的工作,当实现可变脉冲延迟时,打开了利用强激光脉冲角分辨光电子能谱研究分子二聚体中光诱导电子动力学的可能性。
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引用次数: 1
期刊
arXiv: Chemical Physics
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