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Bacteriophages lytic for Salmonella rapidly reduce Salmonella contamination on glass and stainless steel surfaces. 沙门氏菌噬菌体可迅速减少玻璃和不锈钢表面的沙门氏菌污染。
Pub Date : 2013-07-01 Epub Date: 2013-07-26 DOI: 10.4161/bact.25697
Joelle Woolston, Adam R Parks, Tamar Abuladze, Bradley Anderson, Manrong Li, Chandi Carter, Leigh Farris Hanna, Serena Heyse, Duane Charbonneau, Alexander Sulakvelidze
A cocktail of six lytic bacteriophages, SalmoFresh™, significantly (p < 0.05) reduced the number of surface-applied Salmonella Kentucky and Brandenburg from stainless steel and glass surfaces by > 99% (2.1–4.3 log). Both strains were susceptible to SalmoFresh™ in the spot-test assay. Conversely, SalmoFresh™ was unable to reduce surface contamination with a Salmonella Paratyphi B strain that was not susceptible to the phage cocktail in the spot-test assay. However, by replacing two SalmoFresh™ component phages with two new phages capable of lysing the Paratyphi B strain in the spot-test assay, the target range of the cocktail was shifted to include the Salmonella Paratyphi B strain. The modified cocktail, SalmoLyse™, was able to significantly (p < 0.05) reduce surface contamination of the Paratyphi B strain by > 99% (2.1–4.1 log). The data show that both phage cocktails were effective in significantly reducing the levels of Salmonella on hard surfaces, provided the contaminating strains were susceptible in the spot-test (i.e., spot-test susceptibility was indicative of efficacy in subsequent surface decontamination studies). The data also support the concept that phage preparations can be customized to meet the desired antibacterial application.
六种溶解噬菌体SalmoFresh™的混合物显著(p < 0.05)减少了表面应用于不锈钢和玻璃表面的肯塔基沙门氏菌和勃兰登堡沙门氏菌的数量> 99% (2.1-4.3 log)。在现场试验中,两株菌株对SalmoFresh™敏感。相反,SalmoFresh™无法减少对噬菌体混合物不敏感的副伤寒沙门氏菌B株的表面污染。然而,通过在现场试验中将两个SalmoFresh™成分噬菌体替换为两个能够裂解副伤寒沙门氏菌B株的新噬菌体,鸡尾酒的目标范围被转移到包括副伤寒沙门氏菌B株。改良后的鸡尾酒SalmoLyse™能够显著(p < 0.05)减少乙型副伤寒菌株表面污染> 99% (2.1-4.1 log)。数据表明,两种噬菌体鸡尾酒都能有效地显著降低坚硬表面上沙门氏菌的水平,前提是污染菌株在现场试验中敏感(即,在随后的表面去污研究中,现场试验的敏感性表明了有效性)。这些数据还支持噬菌体制剂可以定制以满足所需抗菌应用的概念。
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引用次数: 1
Life in Science: Armin Dale Kaiser. 《科学生活》:阿明·戴尔·凯泽。
Pub Date : 2013-07-01 Epub Date: 2013-06-28 DOI: 10.4161/bact.25589
Armin Dale Kaiser
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引用次数: 0
Innate and acquired bacteriophage-mediated immunity. 先天和获得性噬菌体介导免疫。
Pub Date : 2013-07-01 Epub Date: 2013-07-29 DOI: 10.4161/bact.25857
Jeremy J Barr, Merry Youle, Forest Rohwer

We recently described a novel, non-host-derived, phage-mediated immunity active at mucosal surfaces, the main site of pathogen entry in metazoans. In that work, we showed that phage T4 adheres to mucus glycoproteins via immunoglobulin-like domains displayed on its capsid. This adherence positions the phage in mucus surfaces where they are more likely to encounter and kill bacteria, thereby benefiting both the phage and its metazoan host. We presented this phage-metazoan symbiosis based on an exclusively lytic model of phage infection. Here we extend our bacteriophage adherence to mucus (BAM) model to consider the undoubtedly more complex dynamics in vivo. We hypothesize how mucus-adherent phages, both lytic and temperate, might impact the commensal microbiota as well as protect the metazoan epithelium from bacterial invasion. We suggest that BAM may provide both an innate and an acquired antimicrobial immunity.

我们最近描述了一种新的、非宿主来源的、在粘膜表面活跃的噬菌体介导的免疫,这是后生动物病原体进入的主要部位。在这项工作中,我们发现噬菌体T4通过其衣壳上显示的免疫球蛋白样结构域粘附在粘液糖蛋白上。这种粘附使噬菌体处于粘液表面,在那里它们更有可能遇到并杀死细菌,从而使噬菌体及其后生动物宿主都受益。我们提出了这种噬菌体-后生动物共生基于噬菌体感染的完全溶解模型。在这里,我们扩展了我们的噬菌体黏液粘附(BAM)模型,以考虑无疑更复杂的体内动力学。我们假设黏液粘附噬菌体(裂解性和温带)如何影响共生微生物群以及保护后生动物上皮免受细菌侵袭。我们认为BAM可能同时提供先天和获得性抗微生物免疫。
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引用次数: 66
Properties and mutation studies of a bacteriophage-derived chimeric recombinant staphylolytic protein P128: Comparison to recombinant lysostaphin. 噬菌体衍生的嵌合重组葡萄球菌溶解蛋白P128的性质和突变研究:与重组溶葡萄球菌蛋白的比较。
Pub Date : 2013-07-01 Epub Date: 2013-10-02 DOI: 10.4161/bact.26564
Sanjeev Rajagopalan Saravanan, Vivek Daniel Paul, Shilpa George, Sudarson Sundarrajan, Nirmal Kumar, Madhavi Hebbur, Naveen Kumar, Ananda Veena, Uma Maheshwari, Chemira Biddappa Appaiah, Muralidharan Chidambaran, Anuradha Gopal Bhat, Sukumar Hariharan, Sriram Padmanabhan

P128 is a chimeric anti-staphylococcal protein having a catalytic domain from a Staphylococcus bacteriophage K tail associated structural protein and a cell wall targeting domain from the Staphylococcus bacteriocin-lysostaphin. In this study, we disclose additional properties of P128 and compared the same with lysostaphin. While lysostaphin was found to get inactivated by heat and was inactive on its parent strain S. simulans biovar staphylolyticus, P128 was thermostable and was lytic towards S. simulans biovar staphylolyticus demonstrating a difference in their mechanism of action. Selected mutation studies of the catalytic domain of P128 showed that arginine and cysteine, at 40th and 76th positions respectively, are critical for the staphylolytic activity of P128, although these amino acids are not conserved residues. In comparison to native P128, only the R40S mutant (P301) was catalytically active on zymogram gel and had a similar secondary structure, as assessed by circular dichroism analysis and in silico modeling with similar cell binding properties. Mutation of the arginine residue at 40th position of the P128 molecule caused dramatic reduction in the Vmax (∆OD600 [mg/min]) value (nearly 270 fold) and the recombinant lysostaphin also showed lesser Vmax value (nearly 1.5 fold) in comparison to the unmodified P128 protein. The kinetic parameters such as apparent Km (KmAPP) and apparent Kcat (KcatAPP) of the native P128 protein also showed significant differences in comparison to the values observed for P301 and lysostaphin.

P128是一种嵌合抗葡萄球菌蛋白,其催化结构域来自葡萄球菌噬菌体K尾相关结构蛋白,细胞壁靶向结构域来自葡萄球菌溶葡萄素。在这项研究中,我们揭示了P128的其他特性,并将其与溶葡萄球菌蛋白进行了比较。溶葡萄球菌素在高温下失活,对其亲本菌株拟南葡萄球菌无活性,而P128具有耐热性,对拟南葡萄球菌有裂解作用,两者作用机制不同。P128催化结构域的选择性突变研究表明,精氨酸和半胱氨酸分别位于第40位和第76位,对P128的葡萄球菌降解活性至关重要,尽管这些氨基酸不是保守残基。与天然P128相比,只有R40S突变体(P301)在酶谱凝胶上具有催化活性,并且具有相似的二级结构,通过圆二色性分析和硅模型评估具有相似的细胞结合特性。P128分子第40位精氨酸残基的突变使Vmax(∆OD600 [mg/min])值显著降低(约270倍),重组溶葡萄球菌蛋白的Vmax值也比未修饰的P128蛋白低(约1.5倍)。P128蛋白的表观Km (KmAPP)和表观KcatAPP (KcatAPP)等动力学参数也与P301和溶葡萄蛋白存在显著差异。
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引用次数: 14
Listeria phages: Genomes, evolution, and application. 李斯特菌噬菌体:基因组、进化和应用。
Pub Date : 2013-07-01 Epub Date: 2013-10-24 DOI: 10.4161/bact.26861
Jochen Klumpp, Martin J Loessner

Listeria is an important foodborne pathogen and the causative agent of Listeriosis, a potentially fatal infection. Several hundred Listeria bacteriophages have been described over the past decades, but only few have actually been characterized in some detail, and genome sequences are available for less than twenty of them. We here present an overview of what is currently known about Listeria phage genomics, their role in host evolution and pathogenicity, and their various applications in biotechnology and diagnostics.

李斯特菌是一种重要的食源性病原体,也是李斯特菌病的病原体,李斯特菌病是一种潜在的致命性感染。在过去的几十年中,已经描述了几百种李斯特菌噬菌体,但只有少数噬菌体的特征得到了详细描述,其中只有不到 20 种噬菌体的基因组序列可供使用。我们在此概述目前已知的李斯特菌噬菌体基因组学、它们在宿主进化和致病性中的作用,以及它们在生物技术和诊断学中的各种应用。
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引用次数: 0
Life in Science: Richard Calendar. 科学生活:Richard Calendar。
Pub Date : 2013-04-01 DOI: 10.4161/bact.25516
Richard Calendar
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引用次数: 1
What are the limitations on the wider therapeutic use of phage? 噬菌体在更广泛的治疗用途方面有哪些限制?
Pub Date : 2013-04-01 DOI: 10.4161/bact.24872
Alexandra Henein

Bacterial resistance to antibiotics poses a serious health threat. Since research into new antibiotics is not progressing at the same rate as the development of bacterial resistance, widespread calls for alternatives to antibiotics have been made. Phage therapy is an ideal alternative candidate to be investigated. However the success of phage therapy may be hampered by a lack of investment support from large pharmaceutical companies, due to their narrow spectrum of activity in antibiotics, very large costs associated with clinical trials of the variety of phages needed, and regulatory requirements remaining unclear. Intellectual property is difficult to secure for therapeutic phage products for a variety of reasons, and patenting procedures vary widely between the US and the EU. Consequently, companies are more likely to invest in phage products for decontamination or veterinary use, rather than clinical use in humans. Some still raise questions as to the safety of phage therapy overall, suggesting the possibility of cytotoxicity and immunogenicity, depending on the phage preparation and route. On the other hand, with patients dying because of infections untreatable with conventional antibiotics, the question arises as to whether it is ethical not to pursue phage therapy more diligently. A paradigm shift about how phage therapy is perceived is required, as well as more rigorous proof of efficacy in the form of clinical trials of existing medicinal phage products. Phage therapy potential may be fulfilled in the meantime by allowing individual preparations to be used on a named-patient basis, with extensive monitoring and multidisciplinary team input. The National Health Service and academia have a role in carrying out clinical phage research, which would be beneficial to public health, but not necessarily financially rewarding.

细菌对抗生素的抗药性对健康构成严重威胁。由于新型抗生素的研究进展速度赶不上细菌耐药性的发展速度,人们普遍呼吁开发抗生素的替代品。噬菌体疗法是一个理想的替代研究对象。然而,由于噬菌体在抗生素中的活性范围较窄,临床试验所需的各种噬菌体成本非常高,而且监管要求仍不明确,因此缺乏大型制药公司的投资支持,这可能会阻碍噬菌体疗法的成功。由于种种原因,治疗性噬菌体产品很难获得知识产权,美国和欧盟的专利申请程序也大相径庭。因此,公司更倾向于投资用于净化或兽医用途的噬菌体产品,而不是用于人类临床。一些人仍然对噬菌体疗法的整体安全性提出质疑,认为根据噬菌体制剂和途径的不同,可能会产生细胞毒性和免疫原性。另一方面,由于传统抗生素无法治疗的感染导致患者死亡,人们不禁要问,不更加努力地开展噬菌体疗法是否符合道德规范。人们需要转变对噬菌体疗法的看法,并通过对现有药用噬菌体产品进行临床试验,更严格地证明其疗效。在此期间,噬菌体疗法的潜力可以通过允许在指定病人的基础上使用单个制剂,并进行广泛监测和多学科团队投入来实现。国家卫生服务机构和学术界可以在开展临床噬菌体研究方面发挥作用,这将有益于公共卫生,但不一定会带来经济回报。
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引用次数: 0
Upcoming meetings 即将到来的会议
Pub Date : 2013-04-01 DOI: 10.1111/1744-9987.12133
Alexander Sulakvelidze
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引用次数: 0
Lytic bacteriophages: Potential interventions against enteric bacterial pathogens on produce. 噬菌体:对农产品肠道细菌病原体的潜在干预措施。
Pub Date : 2013-04-01 DOI: 10.4161/bact.25518
Manan Sharma

Foodborne illnesses resulting from the consumption of produce commodities contaminated with enteric pathogens continue to be a significant public health issue. Lytic bacteriophages may provide an effective and natural intervention to reduce bacterial pathogens on fresh and fresh-cut produce commodities. The use of multi-phage cocktails specific for a single pathogen has been most frequently assessed on produce commodities to minimize the development of bacteriophage insensitive mutants (BIM) in target pathogen populations. Regulatory approval for the use of several lytic phage products specific for bacterial pathogens such as Escherichia coli O157:H7, Salmonella spp. and Listeria monocytogenes in foods and on food processing surfaces has been granted by various agencies in the US and other countries, possibly allowing for the more widespread use of bacteriophages in the decontamination of fresh and minimally processed produce. Research studies have shown lytic bacteriophages specific for E. coli O157:H7, Salmonella spp. and Listeria monocytogenes have been effective in reducing pathogen populations on leafy greens, sprouts and tomatoes.

食用被肠道病原体污染的农产品而导致的食源性疾病仍然是一个重大的公共卫生问题。噬菌体溶解剂可提供一种有效的天然干预措施,减少新鲜和鲜切农产品中的细菌病原体。针对单一病原体的多噬菌体鸡尾酒最常在农产品上使用,以尽量减少目标病原体种群中噬菌体不敏感突变体(BIM)的发展。美国和其他国家的多个机构已批准在食品和食品加工表面使用几种专门针对细菌病原体(如大肠杆菌 O157:H7、沙门氏菌属和单核细胞增生李斯特菌)的噬菌体产品,这可能会使噬菌体更广泛地用于新鲜和微加工农产品的净化。研究表明,针对大肠杆菌 O157:H7、沙门氏菌属和李斯特菌的特异性噬菌体能有效减少叶菜、芽菜和西红柿上的病原体数量。
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引用次数: 0
Enzymatic characterization of a lysin encoded by bacteriophage EL. 噬菌体EL编码的溶解酶的酶学特性。
Pub Date : 2013-04-01 DOI: 10.4161/bact.25449
Diana A Tafoya, Zacariah L Hildenbrand, Nadia Herrera, Sudheer K Molugu, Vadim V Mesyanzhinov, Konstantin A Miroshnikov, Ricardo A Bernal

The bacteriophage EL is a virus that specifically attacks the human pathogen Pseudomonas aeruginosa. This phage carries a large genome that encodes for its own chaperonin which presumably facilitates the proper folding of phage proteins independently of the host chaperonin system. EL also encodes a lysin enzyme, a critical component of the lytic cycle that is responsible for digesting the peptidoglycan layer of the host cell wall. Previously, this lysin was believed to be a substrate of the chaperonin encoded by phage EL. In order to characterize the activity of the EL lysin, and to determine whether lysin activity is contingent on chaperonin-mediated folding, a series of peptidoglycan hydrolysis activity assays were performed. Results indicate that the EL-encoded lysin has similar enzymatic activity to that of the Gallus gallus lysozyme and that the EL lysin folds into a functional enzyme in the absence of phage chaperonin and should not be considered a substrate.

噬菌体EL是一种专门攻击人类病原体铜绿假单胞菌的病毒。这种噬菌体携带一个大的基因组,编码其自身的伴侣蛋白,这可能有助于噬菌体蛋白独立于宿主伴侣蛋白系统的适当折叠。EL还编码一种溶酶,这是分解循环的关键组成部分,负责消化宿主细胞壁的肽聚糖层。以前,这种溶酶被认为是噬菌体EL编码的伴侣蛋白的底物。为了表征EL溶酶的活性,并确定溶酶活性是否取决于伴侣蛋白介导的折叠,进行了一系列肽聚糖水解活性测定。结果表明,EL编码的溶菌素与Gallus Gallus溶菌酶具有相似的酶活性,并且EL溶菌素在缺乏噬菌体伴蛋白的情况下折叠成功能酶,不应被视为底物。
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引用次数: 4
期刊
Bacteriophage
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