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Genotype Data and Derived Genetic Instruments of Adolescent Brain Cognitive Development Study® for Better Understanding of Human Brain Development. 青少年大脑认知发展研究®的基因型数据和衍生遗传工具,以更好地了解人类大脑发育。
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-04-24 DOI: 10.1007/s10519-023-10143-0
Chun Chieh Fan, Robert Loughnan, Sylia Wilson, John K Hewitt

The data release of Adolescent Brain Cognitive Development® (ABCD) Study represents an extensive resource for investigating factors relating to child development and mental wellbeing. The genotype data of ABCD has been used extensively in the context of genetic analysis, including genome-wide association studies and polygenic score predictions. However, there are unique opportunities provided by ABCD genetic data that have not yet been fully tapped. The diverse genomic variability, the enriched relatedness among ABCD subsets, and the longitudinal design of the ABCD challenge researchers to perform novel analyses to gain deeper insight into human brain development. Genetic instruments derived from the ABCD genetic data, such as genetic principal components, can help to better control confounds beyond the context of genetic analyses. To facilitate the use genomic information in the ABCD for inference, we here detail the processing procedures, quality controls, general characteristics, and the corresponding resources in the ABCD genotype data of release 4.0.

青少年大脑认知发展®(ABCD)研究的数据发布为调查与儿童发展和心理健康相关的因素提供了广泛的资源。ABCD的基因型数据已被广泛用于遗传分析,包括全基因组关联研究和多基因评分预测。然而,ABCD基因数据提供了一些独特的机会,但这些数据尚未得到充分利用。多样的基因组变异性、ABCD亚群之间丰富的相关性以及ABCD的纵向设计挑战了研究人员进行新的分析,以更深入地了解人类大脑的发育。来自ABCD遗传数据的遗传工具,如遗传主成分,可以帮助更好地控制遗传分析之外的混杂因素。为了便于使用ABCD中的基因组信息进行推断,我们在这里详细介绍了4.0版ABCD基因型数据中的处理程序、质量控制、一般特征和相应资源。
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引用次数: 0
Heritability Estimation of Cognitive Phenotypes in the ABCD Study® Using Mixed Models. 使用混合模型的ABCD研究®中认知表型的遗传力估计。
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-04-07 DOI: 10.1007/s10519-023-10141-2
Diana M Smith, Robert Loughnan, Naomi P Friedman, Pravesh Parekh, Oleksandr Frei, Wesley K Thompson, Ole A Andreassen, Michael Neale, Terry L Jernigan, Anders M Dale

Twin and family studies have historically aimed to partition phenotypic variance into components corresponding to additive genetic effects (A), common environment (C), and unique environment (E). Here we present the ACE Model and several extensions in the Adolescent Brain Cognitive Development℠ Study (ABCD Study®), employed using the new Fast Efficient Mixed Effects Analysis (FEMA) package. In the twin sub-sample (n = 924; 462 twin pairs), heritability estimates were similar to those reported by prior studies for height (twin heritability = 0.86) and cognition (twin heritability between 0.00 and 0.61), respectively. Incorporating SNP-derived genetic relatedness and using the full ABCD Study® sample (n = 9,742) led to narrower confidence intervals for all parameter estimates. By leveraging the sparse clustering method used by FEMA to handle genetic relatedness only for participants within families, we were able to take advantage of the diverse distribution of genetic relatedness within the ABCD Study® sample.

双胞胎和家族研究历来旨在将表型变异划分为与加性遗传效应(A)、共同环境(C)和独特环境(E)相对应的成分。在这里,我们介绍了ACE模型和青少年大脑认知发展的几个扩展℠ 研究(ABCD Study®),使用新的快速高效混合效应分析(FEMA)软件包。在孪晶子样本(n = 924;462对双胞胎),遗传力估计值与先前研究报告的身高相似(双胞胎遗传力 = 0.86)和认知(双胞胎遗传力在0.00和0.61之间)。结合SNP衍生的遗传相关性,并使用ABCD研究®的完整样本(n = 9742)导致所有参数估计的置信区间变窄。通过利用FEMA使用的稀疏聚类方法来处理仅针对家庭内参与者的遗传相关性,我们能够利用ABCD研究®样本中遗传相关性的多样性分布。
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引用次数: 0
Gene-by-Environment Interaction Effects of Social Adversity on Externalizing Behavior in ABCD Youth. ABCD青年社会逆境对外化行为的基因与环境交互效应。
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-02-16 DOI: 10.1007/s10519-023-10136-z
Genevieve F Dash, Sarah L Karalunas, Emily A Kenyon, Emily K Carter, Michael A Mooney, Joel T Nigg, Sarah W Feldstein Ewing

This study tested whether multiple domains of social adversity, including neighborhood opportunity/deprivation and life stress, moderate genetic (A), common environmental (C), and unique environmental (E) influences on externalizing behaviors in 760 same-sex twin pairs (332 monozygotic; 428 dizygotic) ages 10-11 from the ABCD Study. Proportion of C influences on externalizing behavior increased at higher neighborhood adversity (lower overall opportunity). A decreased and C and E increased at lower levels of educational opportunity. A increased at lower health-environment and social-economic opportunity levels. For life stress, A decreased and E increased with number of experienced events. Results for educational opportunity and stressful life experiences suggest a bioecological gene-environment interaction pattern such that environmental influences predominate at higher levels of adversity, whereas limited access to healthcare, housing, and employment stability may potentiate genetic liability for externalizing behavior via a diathesis-stress mechanism. More detailed operationalization of social adversity in gene-environment interaction studies is needed.

本研究测试了ABCD研究中760对10-11岁的同性双胞胎(332对单卵双胞胎;428对双卵双胞胎)的多个社会逆境领域,包括邻里机会/剥夺和生活压力、适度遗传(A)、共同环境(C)和独特环境(E),是否对外化行为产生影响。在较高的邻里逆境(较低的总体机会)中,C对外化行为的影响比例增加。受教育机会越低,A下降,C和E增加。在较低的健康环境和社会经济机会水平下,A增加。对于生活压力,A随着经历事件的次数而减少,E随着经历事件次数而增加。教育机会和压力生活经历的结果表明,生物生态-基因-环境相互作用模式使得环境影响在更高水平的逆境中占主导地位,而有限的医疗保健、住房和就业稳定性可能会通过素质-压力机制增强外化行为的遗传责任。需要在基因-环境相互作用研究中对社会逆境进行更详细的操作。
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引用次数: 0
A Phenome-Wide Association Study (PheWAS) of Late Onset Alzheimer Disease Genetic Risk in Children of European Ancestry at Middle Childhood: Results from the ABCD Study. 欧洲血统儿童中晚期阿尔茨海默病遗传风险的全表型关联研究 (PheWAS):ABCD 研究的结果
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-04-18 DOI: 10.1007/s10519-023-10140-3
Aaron J Gorelik, Sarah E Paul, Nicole R Karcher, Emma C Johnson, Isha Nagella, Lauren Blaydon, Hailey Modi, Isabella S Hansen, Sarah M C Colbert, David A A Baranger, Sara A Norton, Isaiah Spears, Brian Gordon, Wei Zhang, Patrick L Hill, Thomas F Oltmanns, Janine D Bijsterbosch, Arpana Agrawal, Alexander S Hatoum, Ryan Bogdan

Genetic risk for Late Onset Alzheimer Disease (AD) has been associated with lower cognition and smaller hippocampal volume in healthy young adults. However, whether these and other associations are present during childhood remains unclear. Using data from 5556 genomically-confirmed European ancestry youth who completed the baseline session of the ongoing the Adolescent Brain Cognitive DevelopmentSM Study (ABCD Study®), our phenome-wide association study estimating associations between four indices of genetic risk for late-onset AD (i.e., AD polygenic risk scores (PRS), APOE rs429358 genotype, AD PRS with the APOE region removed (ADPRS-APOE), and an interaction between ADPRS-APOE and APOE genotype) and 1687 psychosocial, behavioral, and neural phenotypes revealed no significant associations after correction for multiple testing (all ps > 0.0002; all pfdr > 0.07). These data suggest that AD genetic risk may not phenotypically manifest during middle-childhood or that effects are smaller than this sample is powered to detect.

晚期阿尔茨海默病(AD)的遗传风险与健康年轻人认知能力较低和海马体积较小有关。然而,这些及其他关联在儿童时期是否存在仍不清楚。我们的全表型关联研究使用了 5556 名经基因组学确认的欧洲血统青少年的数据,这些青少年完成了正在进行的青少年大脑认知发展SM 研究(ABCD 研究®)的基线研究、AD多基因风险评分(PRS)、APOE rs429358基因型、去除APOE区域的AD PRS(ADPRS-APOE)以及ADPRS-APOE和APOE基因型之间的交互作用)与1687种社会心理、行为和神经表型之间的关联进行了估算,结果显示,经多重检验校正后,两者之间无显著关联(所有ps>0.0002;所有ppdr>0.07)。这些数据表明,注意力缺失症的遗传风险可能不会在儿童中期表现出来,或者其影响小于该样本的检测能力。
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引用次数: 0
Associations Between Adolescent Pain and Psychopathology in the Adolescent Brain Cognitive Development (ABCD) Study. 青少年脑认知发展 (ABCD) 研究中青少年疼痛与心理病理学之间的关联。
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-04-10 DOI: 10.1007/s10519-023-10138-x
Lydia Rader, Samantha M Freis, Naomi P Friedman

Pain and psychopathology co-occur in adolescence, but the directionality and etiology of these associations are unclear. Using the pain questionnaire and the Child Behavior Checklist from the Adolescent Brain Cognitive Development study (n = 10,414 children [770 twin pairs] aged 12-13), we estimated longitudinal, co-twin control, and twin models to evaluate the nature of these associations. In two-wave cross-lag panel models, there were small cross-lag effects that suggested bidirectional associations. However, the co-twin control models suggested that most associations were familial. Pain at age 12 and 13 was mostly environmental (A = 0-12%, C = 15-30%, E = 70-73%) and the twin models suggested that associations with psychopathology were primarily due to shared environmental correlations. The exception was externalizing, which had a phenotypic prospective effect on pain, a significant within-family component, and a non-shared environmental correlation at age 12. Environmental risk factors may play a role in pain-psychopathology co-occurrence. Future studies can examine risk factors such as stressful life events.

疼痛和精神病理学在青春期同时出现,但这些关联的方向性和病因尚不清楚。我们利用青少年大脑认知发展研究(n = 10,414 名儿童 [770 对双胞胎],年龄在 12-13 岁之间)中的疼痛问卷和儿童行为检查表,估计了纵向模型、双胞胎对照模型和双胞胎模型,以评估这些关联的性质。在两波交叉滞后面板模型中,存在微小的交叉滞后效应,表明存在双向关联。然而,同卵双胞胎对照模型表明,大多数关联是家族性的。12 岁和 13 岁时的疼痛主要是环境因素造成的(A = 0-12%,C = 15-30%,E = 70-73%),双生子模型表明,与精神病理学的关联主要是由于共同的环境相关性造成的。外部化是个例外,它对疼痛有表型前瞻性影响,有显著的家庭内成分,在 12 岁时与非共享环境相关。环境风险因素可能在疼痛-心理病理学共现中发挥作用。未来的研究可以对生活压力事件等风险因素进行研究。
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引用次数: 0
Polygenic Risk for Schizophrenia, Major Depression, and Post-traumatic Stress Disorder and Hippocampal Subregion Volumes in Middle Childhood. 精神分裂症、重度抑郁症和创伤后应激障碍的多基因风险与儿童中期的海马亚区体积。
IF 2.6 4区 医学 Q2 BEHAVIORAL SCIENCES Pub Date : 2023-05-01 Epub Date: 2023-01-31 DOI: 10.1007/s10519-023-10134-1
Jacob G Pine, Sarah E Paul, Emma Johnson, Ryan Bogdan, Sridhar Kandala, Deanna M Barch

Studies demonstrate that individuals with diagnoses for Major Depressive Disorder (MDD), Post-traumatic Stress Disorder (PTSD), and Schizophrenia (SCZ) may exhibit smaller hippocampal gray matter relative to otherwise healthy controls, although the effect sizes vary in each disorder. Existing work suggests that hippocampal abnormalities in each disorder may be attributable to genetic liability and/or environmental variables. The following study uses baseline data from the Adolescent Brain and Cognitive Development[Formula: see text] Study (ABCD Study[Formula: see text]) to address three open questions regarding the relationship between genetic risk for each disorder and hippocampal volume reductions: (a) whether polygenic risk scores (PGRS) for MDD, PTSD, and SCZ are related to hippocampal volume; (b) whether PGRS for MDD, PTSD, and SCZ are differentially related to specific hippocampal subregions along the longitudinal axis; and (c) whether the association between PGRS for MDD, PTSD, and SCZ and hippocampal volume is moderated by sex and/or environmental adversity. In short, we did not find associations between PGRS for MDD, PTSD, and SCZ to be significantly related to any hippocampal subregion volumes. Furthermore, neither sex nor enviornmental adversity significantly moderated these associations. Our study provides an important null finding on the relationship genetic risk for MDD, PTSD, and SCZ to measures of hippocampal volume.

研究表明,被诊断为重度抑郁障碍(MDD)、创伤后应激障碍(PTSD)和精神分裂症(SCZ)的患者,其海马灰质可能比健康对照组的海马灰质要小,但每种障碍的影响大小各不相同。现有研究表明,每种失调症的海马异常可能是由遗传因素和/或环境变量引起的。以下研究利用青少年大脑和认知发展[公式:见正文]研究(ABCD 研究[公式:见正文])的基线数据,来解决有关每种障碍的遗传风险与海马体积减少之间关系的三个未决问题:(a) MDD、PTSD 和 SCZ 的多基因风险评分(PGRS)是否与海马体积有关;(b) MDD、PTSD 和 SCZ 的多基因风险评分是否沿纵轴与特定的海马亚区有不同的关系;(c) MDD、PTSD 和 SCZ 的多基因风险评分与海马体积之间的关系是否受性别和/或环境逆境的调节。简而言之,我们没有发现 MDD、创伤后应激障碍和 SCZ 的 PGRS 与任何海马亚区体积之间存在显著关联。此外,性别和环境逆境都没有明显调节这些关联。我们的研究就MDD、PTSD和SCZ的遗传风险与海马体积的测量之间的关系提供了一个重要的无效发现。
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引用次数: 0
Celebrating a Century of Research in Behavioral Genetics. 庆祝行为遗传学研究一个世纪。
IF 2.6 4区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2023-03-01 Epub Date: 2023-01-20 DOI: 10.1007/s10519-023-10132-3
Robert Plomin

A century after the first twin and adoption studies of behavior in the 1920s, this review looks back on the journey and celebrates milestones in behavioral genetic research. After a whistle-stop tour of early quantitative genetic research and the parallel journey of molecular genetics, the travelogue focuses on the last fifty years. Just as quantitative genetic discoveries were beginning to slow down in the 1990s, molecular genetics made it possible to assess DNA variation directly. From a rocky start with candidate gene association research, by 2005 the technological advance of DNA microarrays enabled genome-wide association studies, which have successfully identified some of the DNA variants that contribute to the ubiquitous heritability of behavioral traits. The ability to aggregate the effects of thousands of DNA variants in polygenic scores has created a DNA revolution in the behavioral sciences by making it possible to use DNA to predict individual differences in behavior from early in life.

在20世纪20年代第一次双胞胎和收养行为研究一个世纪后,这篇综述回顾了这段旅程,并庆祝了行为遗传学研究的里程碑。在经历了早期定量遗传学研究和分子遗传学平行之旅后,游记聚焦于过去的五十年。正如定量遗传学发现在20世纪90年代开始放缓一样,分子遗传学使直接评估DNA变异成为可能。从候选基因关联研究的艰难起步,到2005年,DNA微阵列的技术进步使全基因组关联研究成为可能,这些研究成功地确定了一些导致行为特征普遍遗传的DNA变体。将数千种DNA变体的影响汇总在多基因评分中的能力,使从生命早期就可以使用DNA预测个体行为差异,从而在行为科学中创造了一场DNA革命。
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引用次数: 1
Bidirectional Causal Associations Between Same-Sex Attraction and Psychological Distress: Testing Moderation and Mediation Effects. 同性吸引力与心理困扰之间的双向因果关系:测试调节和中介效应
IF 2.6 4区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2023-03-01 Epub Date: 2022-12-15 DOI: 10.1007/s10519-022-10130-x
Olakunle A Oginni, Kai X Lim, Qazi Rahman, Patrick Jern, Thalia C Eley, Frühling V Rijsdijk

Only one study has examined bidirectional causality between sexual minority status (having same-sex attraction) and psychological distress. We combined twin and genomic data from 8700 to 9700 participants in the UK Twins Early Development Study cohort at ≈21 years to replicate and extend these bidirectional causal effects using separate unidirectional Mendelian Randomization-Direction of Causation models. We further modified these models to separately investigate sex differences, moderation by childhood factors (retrospectively-assessed early-life adversity and prospectively-assessed childhood gender nonconformity), and mediation by victimization. All analyses were carried out in OpenMx in R. Same-sex attraction causally influenced psychological distress with significant reverse causation (beta = 0.19 and 0.17; 95% CIs = 0.09, 0.29 and 0.08, 0.25 respectively) and no significant sex differences. The same-sex attraction → psychological distress causal path was partly mediated by victimization (12.5%) while the reverse causal path was attenuated by higher childhood gender nonconformity (moderation coefficient = -0.09, 95% CI: -0.13, -0.04).

只有一项研究考察了性少数群体身份(具有同性吸引力)与心理困扰之间的双向因果关系。我们将英国双胞胎早期发育研究队列中8700至9700名参与者在≈21岁时的双胞胎和基因组数据结合起来,使用单独的单向孟德尔随机化-因果方向模型复制并扩展了这些双向因果效应。我们进一步修改了这些模型,以分别研究性别差异、童年因素(回顾性评估的早期生活逆境和前瞻性评估的童年性别不一致)的调节作用以及受害情况的中介作用。同性吸引对心理困扰有显著的反向因果关系(贝塔值分别为 0.19 和 0.17;95% CIs 分别为 0.09、0.29 和 0.08、0.25),但没有显著的性别差异。同性吸引→心理困扰的因果关系部分受受害影响(12.5%),而反向因果关系则受童年性别不一致程度较高的影响(调节系数=-0.09,95% CI:-0.13,-0.04)。
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引用次数: 0
Using the Flanker Task to Examine Genetic and Environmental Contributions in Inhibitory Control Across the Preschool Period. 使用侧卫任务检查遗传和环境在抑制控制在整个学前时期的贡献。
IF 2.6 4区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2023-03-01 DOI: 10.1007/s10519-022-10129-4
I-Tzu Hung, Jody M Ganiban, Kimberly J Saudino

The limited research exploring genetic and environmental influences on inhibitory control (IC) in preschoolers has relied on parent ratings or simple delay tasks and has produced mixed results. The present study uses a cognitively-challenging Flanker task to examine genetic and environmental contributions to the development of early IC in a longitudinal sample of 310 same-sex twin pairs (123 MZ; 187 DZ; 51% female) assessed at ages 3, 4 and 5 years. IC was significantly heritable at each age (a2: age 3 = .36; age 4 = .36; age 5 = .35). Stability was entirely accounted for by genetic influences, and change was explained by genetic and nonshared environmental factors. No significant shared environmental influences were observed.

关于基因和环境对学龄前儿童抑制控制(IC)影响的有限研究依赖于父母评分或简单的延迟任务,并产生了不同的结果。本研究使用具有认知挑战性的Flanker任务来检查遗传和环境对310对同性双胞胎(123 MZ;187 DZ;(51%为女性),在3、4和5岁时进行评估。IC在各年龄段均具有显著遗传性(a2: 3岁= 0.36;4岁= 0.36;5岁= 0.35)。稳定性完全由遗传影响来解释,而变化则由遗传和非共享环境因素来解释。没有观察到明显的共同环境影响。
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引用次数: 1
Integrative Multi-omics Analysis of Childhood Aggressive Behavior. 儿童攻击行为的综合多组学分析。
IF 2.6 4区 医学 Q1 Agricultural and Biological Sciences Pub Date : 2023-03-01 DOI: 10.1007/s10519-022-10126-7
Fiona A Hagenbeek, Jenny van Dongen, René Pool, Peter J Roetman, Amy C Harms, Jouke Jan Hottenga, Cornelis Kluft, Olivier F Colins, Catharina E M van Beijsterveldt, Vassilios Fanos, Erik A Ehli, Thomas Hankemeier, Robert R J M Vermeiren, Meike Bartels, Sébastien Déjean, Dorret I Boomsma

This study introduces and illustrates the potential of an integrated multi-omics approach in investigating the underlying biology of complex traits such as childhood aggressive behavior. In 645 twins (cases = 42%), we trained single- and integrative multi-omics models to identify biomarkers for subclinical aggression and investigated the connections among these biomarkers. Our data comprised transmitted and two non-transmitted polygenic scores (PGSs) for 15 traits, 78,772 CpGs, and 90 metabolites. The single-omics models selected 31 PGSs, 1614 CpGs, and 90 metabolites, and the multi-omics model comprised 44 PGSs, 746 CpGs, and 90 metabolites. The predictive accuracy for these models in the test (N = 277, cases = 42%) and independent clinical data (N = 142, cases = 45%) ranged from 43 to 57%. We observed strong connections between DNA methylation, amino acids, and parental non-transmitted PGSs for ADHD, Autism Spectrum Disorder, intelligence, smoking initiation, and self-reported health. Aggression-related omics traits link to known and novel risk factors, including inflammation, carcinogens, and smoking.

本研究介绍并说明了综合多组学方法在研究复杂特征(如儿童攻击行为)的潜在生物学方面的潜力。在645对双胞胎(病例= 42%)中,我们训练了单一和整合的多组学模型来识别亚临床攻击的生物标志物,并研究了这些生物标志物之间的联系。我们的数据包括15个性状、78,772个CpGs和90个代谢物的遗传和两个非遗传多基因评分(pgs)。单组学模型选择了31个pgs、1614个CpGs和90种代谢物,多组学模型选择了44个pgs、746个CpGs和90种代谢物。这些模型在测试(N = 277,病例= 42%)和独立临床数据(N = 142,病例= 45%)中的预测准确率在43 - 57%之间。我们观察到DNA甲基化、氨基酸和父母非遗传性pgs与ADHD、自闭症谱系障碍、智力、开始吸烟和自我报告健康之间的密切联系。与攻击相关的组学特征与已知的和新的危险因素有关,包括炎症、致癌物和吸烟。
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引用次数: 4
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Behavior Genetics
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