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Bacteria Isolated from Canada’s White Rabbit Cave Revealed Antimicrobial Activities 从加拿大白兔洞中分离出的细菌显示出抗菌活性
Pub Date : 2023-05-08 DOI: 10.33043/ff.9.1.66-83
Monica H. Walsh, S. Ghosh, Alfredo Ponce, Chris James, Gabrielle Kam, Tanna Lauriente, Vincent Yu, Kirk Safford, N. Cheeptham
Caves offer a unique habitat for microorganisms, which allow the adaptation of exclusive metabolic pathways to the resources available. This environment could enable the production of primary and secondary metabolites with unique antimicrobial or enzymatic properties. White Rabbit Cave is located in the Monashee Mountain range in south-central British Columbia, a metamorphic range not known for cave and karst development. The present study has recovered bacterial isolates from the White Rabbit Cave and assessed them for their antimicrobial properties by employing the agar plug assay. One hundred and six bacterial isolates were cultivated from the collected samples, among which, five bacterial isolates displayed antimicrobial properties against a methicillin-resistant Staphylococcus aureus (MRSA) strain. Furthermore, these five isolates were identified with 16S rRNA gene sequencing and through phylogenetic analysis. It has been observed that three of them (B076, B053, and B079) were identified as Streptomyces spp. (Phylum Actinobacteria) while the other two were recognized as Paenibacillus spp. (B039) and Paenibacillus terrae (B016) (Phylum Firmicutes). To the best of our knowledge, this is the first study that identifies bacterial species with antimicrobial properties from White Rabbit Cave in the Monashee Mountain range in British Columbia, Canada.
洞穴为微生物提供了一个独特的栖息地,使其能够适应独特的代谢途径,以适应可用的资源。这种环境可以产生具有独特抗菌或酶特性的初级和次级代谢物。白兔洞位于不列颠哥伦比亚省中南部的Monashee山脉,这是一个不以洞穴和喀斯特发育而闻名的变质山脉。本研究从白兔洞中回收了细菌分离株,并采用琼脂塞法对其抗菌性能进行了评估。从收集的样品中培养出106株细菌,其中5株细菌对耐甲氧西林金黄色葡萄球菌(MRSA)表现出抗菌活性。通过16S rRNA基因测序和系统发育分析对5株分离株进行了鉴定。其中3个(B076、B053和B079)被鉴定为链霉菌属(放线菌门),另外2个被鉴定为芽孢杆菌属(B039)和地芽孢杆菌属(B016)(厚壁菌门)。据我们所知,这是第一次在加拿大不列颠哥伦比亚省莫纳希山脉的白兔洞中发现具有抗菌特性的细菌种类。
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引用次数: 0
Preliminary Studies on a Novel Antimicrobial Compound Producing Bacterium Discovered in the Rio Grande Valley of Texas 一种在德克萨斯州里约热内卢格兰德河谷发现的新型抗菌化合物生产细菌的初步研究
Pub Date : 2023-05-08 DOI: 10.33043/ff.9.1.98-111
Julissa Hernandez, Anieto Ugochukwu
We analyzed different soil samples collected across the Rio Grande Valley (RGV) of Texas for bacteria capable of producing antimicrobial compounds. Of the more than 500 bacterial colonies tested, less than 1 percent gave any indication of the likelihood of producing antimicrobial compounds asdetermined by the diameter of the observed zones of inhibition created when tested on the cultures of safe ESKAPE relatives. One of the soil isolates of interest was further studied with the 16S rRNA gene sequenced and analyzed, and its antimicrobial compound was also extracted using the ethyl acetate and methanol extraction method. The results obtained suggest that the identified bacterium could be a novel specie or at least a sub-specie of the genus Pseudomonas and the novel antimicrobial compound discovered possibly broad spectrum in nature considering that it is active against gram-positive and gram-negative bacteria, especially Staphylococcus epidermidis, the safe relative of Staphylococcus aureus. Furthermore, positive inhibitory results were obtained when the antimicrobial compound was tested on Bacillus subtilis, Klebsiella pneumoniae, Pseudomonas putida, Enterococcus raffinosus, Erwinia caratovora, Enterobacter aerogenes and an unknown bacterium from an environmental sample etc. The newly discovered antimicrobial compound has been named “Anietocin” and will be the subject of extensive studies in the coming research efforts.
我们分析了德克萨斯州里奥格兰德河谷(RGV)收集的不同土壤样本,以寻找能够产生抗菌化合物的细菌。在测试的500多个细菌菌落中,不到1%给出了产生抗菌化合物的可能性的任何指示,这是由在安全的ESKAPE亲属培养物上测试时观察到的抑制区直径决定的。对其中一株感兴趣的土壤分离菌进行16S rRNA基因测序和分析,并采用乙酸乙酯和甲醇萃取法提取其抗菌化合物。结果表明,所鉴定的细菌可能是假单胞菌属的一个新种或至少是一个亚种,并且考虑到其对革兰氏阳性和革兰氏阴性细菌,特别是金黄色葡萄球菌的安全亲戚表皮葡萄球菌具有活性,所发现的新型抗菌化合物可能在自然界中具有广谱性。此外,对枯草芽孢杆菌、肺炎克雷伯菌、恶臭假单胞菌、沙棘肠球菌、卡拉托菌欧文菌、产气肠杆菌和一种环境样品中的未知细菌等进行抑菌试验,均获得阳性抑菌结果。这种新发现的抗菌化合物被命名为“催产素”,并将成为未来研究工作中广泛研究的主题。
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引用次数: 0
Utilizing your Academic Advisor to Maximize your Opportunities and Success as an Undergraduate STEM Student 利用你的学术顾问,最大限度地提高你作为本科STEM学生的机会和成功
Pub Date : 2023-05-08 DOI: 10.33043/ff.9.1.12-17
Sarah Williams
Utilizing your Academic Advisor to Maximize your Opportunities and Success as an Undergraduate STEM Student by Sarah R. Williams, MSc. Biology, Academic Advisor for Biology, Ball State University.
利用你的学术顾问,最大限度地提高你的机会和成功,作为一个本科STEM学生萨拉·r·威廉姆斯,理学硕士。生物学,波尔州立大学生物学学术顾问。
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引用次数: 0
Objective Lens 物镜
Pub Date : 2023-05-08 DOI: 10.33043/ff.9.1.6-11
John McKillip
Editorial from Fine Focus Managing Editor John L. McKillip.
Fine Focus总编辑John L. McKillip的社论。
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引用次数: 0
Undergraduate Student Perspective 本科生视角
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.100-104
Rachel H. Pittsley
Undergraduate Perspective feature by Rachel Pittsley, M.S., a Fine Focus editorial alum.
瑞秋·皮茨利(Rachel Pittsley)的本科视角特写,她是Fine Focus的编辑校友。
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引用次数: 0
The Influence of Infant Formulae on the Growth of Commensal and Pathogenic Streptococcus Species in the Infant Oral Cavity 婴幼儿配方奶粉对婴幼儿口腔内共生致病性链球菌生长的影响
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.48-72
Geneva Waynick, M. J. Carmichael
The oral microbiome is a complex community of microorganisms that influences the health of the human host. A number of diseases are associated with dysbiotic oral microflora in infants and children, including dental and gastrointestinal diseases. A variety of factors can influence the composition of the oral microbial community in infants, including mode of delivery, feeding method, and diet. This study focuses on the effect of nutritional differences in infant formulae on the growth of a commensal species (Streptococcus mitis) and a pathogenic species (Streptococcus mutans) that are commonly found in the infant oral cavity. A culture-dependent model was utilized to test the effects of one infant formula (Nutramigen Enflora) supplemented with a probiotic (Lactobacillus rhamnosus) and a similar infant formula without probiotic supplementation (Enfamil NeuroPro) on the growth of each species. A Snyder’s media test was used to assess acidogenic potential of each species. Bacterial growth in each formula was assessed by measuring colony forming units (CFUs) and by measuring the pH of the culture media over an 8 hour incubation. Results indicate that the probiotic formula may selectively inhibit the growth of the pathogen and aid in producing more favorable conditions for the commensal. These findings may make Nutramigen Enflora the preferred infant formula for overall health. The results of this study may assist parents in selecting alternatives to breastmilk that will support the proper development of the infant oral microbiome by favoring the growth of commensal bacteria.
口腔微生物群是一个复杂的微生物群落,影响人类宿主的健康。婴儿和儿童的许多疾病与口腔微生物菌群失调有关,包括牙科和胃肠道疾病。多种因素可影响婴儿口腔微生物群落的组成,包括分娩方式、喂养方法和饮食。本研究的重点是婴儿配方奶粉的营养差异对一种常见于婴儿口腔的共生物种(链球菌)和致病性物种(变形链球菌)生长的影响。利用培养依赖模型来测试一种添加益生菌(鼠李糖乳杆菌)的婴儿配方奶粉(Nutramigen Enflora)和一种不添加益生菌的类似婴儿配方奶粉(Enfamil NeuroPro)对每种物种生长的影响。采用施耐德培养基试验评估各菌种的致酸潜能。通过测量菌落形成单位(cfu)和培养基的pH值来评估每种配方中的细菌生长情况,培养时间超过8小时。结果表明,该益生菌配方可以选择性地抑制病原菌的生长,为共生菌创造更有利的条件。这些发现可能使Nutramigen Enflora成为整体健康的首选婴儿配方奶粉。这项研究的结果可以帮助父母选择母乳的替代品,通过有利于共生菌的生长来支持婴儿口腔微生物群的正常发育。
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引用次数: 0
Impact of PETase’s Active Site Disulfide Bond on PET Biodegradation PET酶活性位点二硫键对PET生物降解的影响
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.86-99
K. Saha, C. Gedney
Plastic pollution is one of the largest problems globally, with polyethylene terephthalate (PET) plastic as one of the main sources. Effective depolymerization of PET to its monomers for upcycling is a challenge. PETase is reported to be an effective enzyme for biodegradation of PET via C-O bond cleavage of ester linkage. The role of the disulfide bond, present in PETase’s active site sequence, is unknown in the cleavage of PET’s ester linkage. To understand the role of this bond, two separate versions of PETase – one containing the disulfide bond, and the other without the disulfide bond - were modeled using PyMol™, synthesized, and tested for degradation of PET surrogate compound, bis (2-hydroxyethyl) terephthalate (BHET). Several experiments were performed in the presence and absence of phenylmethylsulfonyl fluoride (PMSF), a serine protease. The results reveal that the role of the disulfide bond in the degradation of BHET’s ester linkage is insignificant and the variation in the results (ethylene glycol yields, BHET degradation per microgram of enzyme) are within the experimental uncertainty. This finding is a stepping-stone to further modifying PETase and improving its activity towards commercial adaption of this technology for PET upcycling and creating a circular carbon economy, improving the world’s carbon footprint, and mitigating ocean and environmental plastic pollution.
塑料污染是全球最大的问题之一,聚对苯二甲酸乙二醇酯(PET)塑料是主要污染源之一。有效解聚PET为其单体的升级回收是一个挑战。据报道,PET酶是一种通过C-O键裂解酯链来降解PET的有效酶。二硫键的作用,存在于PET酶的活性位点序列,在PET的酯键的切割是未知的。为了了解这个键的作用,使用PyMol™对两个不同版本的PETase进行建模,一个含有二硫键,另一个不含二硫键,合成并测试PET替代化合物,双(2-羟乙基)对苯二甲酸乙二醇酯(BHET)的降解。在存在和不存在苯基甲基磺酰氟(PMSF)的情况下进行了几项实验,PMSF是一种丝氨酸蛋白酶。结果表明,二硫键在BHET酯链降解中的作用不显著,结果的变化(乙二醇产率、每微克酶对BHET的降解)在实验不确定度范围内。这一发现是进一步改进PETase并改善其活性的垫脚石,该技术将用于PET升级回收,创造循环碳经济,改善世界碳足迹,减轻海洋和环境塑料污染。
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引用次数: 0
Antibacterial Effects of Bitter Melon Extract in Combination With Commonly Prescribed Antibiotics 苦瓜提取物与常用抗生素联合抑菌效果研究
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.74-85
Olivia Mae Ambrose, Tiffany T. Nguyen, Emily M. Nowicki
Antibiotics are commonly overprescribed or taken incorrectly, which has resulted in an alarming increase of antibiotic-resistant bacteria. One potential solution to combat this problem is administering multiple antibiotics together to achieve antibiotic synergy; when two or more antibiotics work together to increase antibacterial efficacy. When considering potential synergistic combinations of antibiotics, one possibility is to utilize antibacterial plant extracts in addition to common antibiotics. The goal of our research was to compare the antibacterial properties of the Chinese medicinal plant bitter melon (Momordica charantia) and four common antibiotics alone or in combination with bitter melon against Micrococcus luteus, Pseudomonas putida, and Escherichia coli. We hypothesized that combining the antibiotics with bitter melon extract would result in increased antibacterial effects against one or more bacterial strains. Oil from dried bitter melon was prepared using the Soxhlet extraction method. Antibacterial properties of bitter melon extract and carbenicillin, streptomycin, colistin, and tetracycline alone or in combination with the extract were determined by performing disk diffusion assays. Diameters of the resulting zones of inhibition for the two treatments were measured and analyzed for statistical significance by performing a two-tailed, paired sample t-test using Rguroo. We found that bitter melon extract individually had little to no antibacterial effect against any of the organisms tested. Interestingly however, combining bitter melon extract with common antibiotics resulted in synergistic effects in some cases, as well as one example of antibiotic antagonism.These results demonstrate that plant-derived extracts can enhance the antibacterial effects of commonly prescribed antibiotics if paired correctly.
抗生素通常被过量使用或不正确使用,这导致抗生素耐药细菌的惊人增加。对付这一问题的一个潜在解决办法是同时使用多种抗生素以实现抗生素协同作用;当两种或两种以上抗生素共同作用以提高抗菌效果时。在考虑抗生素的潜在协同组合时,一种可能性是在普通抗生素之外使用抗菌植物提取物。我们的研究目的是比较中药植物苦瓜(Momordica charantia)和四种常用抗生素单独或与苦瓜联合使用对黄体微球菌、恶臭假单胞菌和大肠杆菌的抗菌性能。我们假设将抗生素与苦瓜提取物结合使用会增加对一种或多种细菌菌株的抗菌效果。采用索氏提取法提取干苦瓜油。采用圆盘扩散法测定苦瓜提取物与卡比西林、链霉素、粘菌素和四环素单独或联合使用的抗菌性能。测量两种处理产生的抑制区直径,并使用Rguroo进行双尾配对样本t检验,分析其统计学显著性。我们发现苦瓜提取物单独对任何被测试的生物体几乎没有抗菌作用。然而,有趣的是,在某些情况下,将苦瓜提取物与普通抗生素结合会产生协同效应,以及抗生素拮抗的一个例子。这些结果表明,如果正确搭配,植物源性提取物可以增强常用抗生素的抗菌作用。
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引用次数: 0
Oxidative Stress Response in Bacteria: A Review 细菌氧化应激反应研究进展
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.36-46
Sydney Rose Addorisio, Rebecca Shteynberg, Matheus Dasilva, Jacob Mixon, K. Mucciarone, Lily Vu, Kristina Arsenault, Vanessa Briand, Sarah Parker, Savannah Smith, Claudia Vise, Cara Pina, Laura T Laranjo
Oxidative Stress Response (OSR) is a defense mechanism used to maintain cellular homeostasis after an increase in levels of Reactive Oxygen Species (ROS). Due to ROS, cell components are vulnerable to damage including the membrane and DNA - which can impact essential functions and lead to cellular death. Without repair, damages caused by ROS have the potential to disrupt cell function in an irreparable manner. Bacterial cells respond to ROS using both endogenous and exogenous pathways depending on their method of metabolism and evolutionary ability. Bacteria have developed regulatory mechanisms to contain damage and are also known to use antioxidants as defense. In this review we will cover the damage induced by ROS to different cellular structures, and mechanisms of OSR used by bacterial cells to promote survival.
氧化应激反应(OSR)是一种防御机制,用于在活性氧(ROS)水平增加后维持细胞稳态。由于活性氧,细胞成分容易受到损伤,包括膜和DNA,这可能影响基本功能并导致细胞死亡。如果没有修复,由ROS引起的损伤有可能以不可修复的方式破坏细胞功能。细菌细胞通过内源性和外源性途径对活性氧作出反应,这取决于它们的代谢方法和进化能力。细菌已经发展出控制损害的调节机制,也知道使用抗氧化剂作为防御。在这篇综述中,我们将介绍活性氧对不同细胞结构的损伤,以及活性氧促进细菌细胞存活的机制。
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引用次数: 2
Phage Therapy: Challenges and Opportunities 噬菌体治疗:挑战与机遇
Pub Date : 2022-07-18 DOI: 10.33043/ff.8.1.12-35
Immadi Siva Ratnakar
The development of antibiotic resistance in bacteria is a growing concern. This situation demands a search for antibiotic alternatives. Bacteriophages—natural viral predators of bacteria—are viewed as a possible alternative to treat bacterial infections. Many clinical trials today have not found phages effective as therapeutics. Some of the major challenges regarding usage of bacteriophage as a therapeutic have been: horizontal evolution of bacteria, limited host range of bacteriophage, removal of endotoxins in preparations, the technical feasibility of isolation, mode of administration, rapid clearance and immune rejection.These issues have been addressed in this review. Applications of genetic engineered phages and other remarkable non-human applications are also discussed.
细菌中抗生素耐药性的发展日益引起人们的关注。这种情况要求寻找抗生素替代品。噬菌体——细菌的天然病毒捕食者——被视为治疗细菌感染的可能选择。今天的许多临床试验都没有发现噬菌体作为治疗药物有效。噬菌体作为一种治疗手段所面临的一些主要挑战是:细菌的水平进化、噬菌体宿主范围有限、制剂中内毒素的去除、分离的技术可行性、给药方式、快速清除和免疫排斥。这些问题已在本次审查中得到解决。还讨论了基因工程噬菌体的应用和其他显著的非人类应用。
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引用次数: 0
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