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The relevance of host genes in malaria. 宿主基因在疟疾中的相关性。
Pub Date : 2007-01-01
Miguel Prudêncio, Cristina D Rodrigues, Maria M Mota
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引用次数: 0
Nicotinic acetylcholine receptors as drug/chemical targets, contributions from comparative genomics, forward and reverse genetics. 烟碱乙酰胆碱受体作为药物/化学靶点,来自比较基因组学,正向和反向遗传学的贡献。
Pub Date : 2007-01-01
David B Sattelle, Andrew K Jones, Laurence A Brown, Steven D Buckingham, Christopher J Mee, Luanda Pym
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引用次数: 0
Drug-target discovery in silico: using the web to identify novel molecular targets for drug action. 用计算机发现药物靶标:利用网络识别药物作用的新分子靶标。
Pub Date : 2007-01-01
David S Wishart
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引用次数: 0
Regional measurement and modelling of carbon balances. 碳平衡的区域测量和模拟。
Pub Date : 2005-01-01
A J Han Dolman, Reinder Ronda, Franco Miglietta, Philippe Ciais
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引用次数: 0
The carbon balance of forest soils: detectability of changes in soil carbon stocks in temperate and Boreal forests. 森林土壤碳平衡:温带和北方森林土壤碳储量变化的可探测性。
Pub Date : 2005-01-01
Frauz Conen, Argyro Zerva, Dominique Arrouays, Claude Jolivet, Paul G Jarvis, John Grace, Maurizio Mencuccini

Estimating soil carbon content as the product of mean carbon concentration and bulk density can result in considerable overestimation. Carbon concentration and soil mass need to be measured on the same sample and carbon contents calculated for each individual sample before averaging. The effect of this bias is likely to be smaller (but still greater than zero) when the primary objective is to determine stock changes over time. Variance and mean carbon content are significantly and positively related to each other, although some sites showed much higher variability than predicted by this relationship, as a likely consequence of their particular site history, forest management, and micro-topography. Because of the proportionality between mean and variance, the number of samples required to detect a fixed change in soil carbon stocks varied directly with the site mean carbon content from less than 10 to several thousands across the range of carbon stocks normally encountered in temperate and Boreal forests. This raises important questions about how to derive an optimal sampling strategy across such a varied range of conditions so as to achieve the aims of the Kyoto Protocol. Overall, on carbon-poor forest sites with little or no disturbance to the soil profile, it is possible to detect changes in total soil organic carbon over time of the order of 0.5 kg (C) m(-2) with manageable sample sizes even using simple random sampling (i.e., about 50 samples per sampling point). More efficient strategies will reveal even smaller differences. On disturbed forest sites (ploughed, windthrow) this is no longer possible (required sample sizes are much larger than 100). Soils developed on coarse aeolian sediments (sand dunes), or where buried logs or harvest residues of the previous rotation are present, can also exhibit large spatial variability in soil carbon. Generally, carbon-rich soils will always require larger numbers of samples. On these sites, simple random sampling is unlikely to be the preferred method, because of its inherent inefficiency. More sophisticated approaches, such as paired re-sampling inside relatively small plots (see, for example, Ellert et al., 2001) are likely to reduce sample size significantly and lead to detection of smaller differences in carbon stocks over time. However, it remains to be shown that at these sites the application of efficient sampling designs will result in the detection of differences relevant for the objectives of the Kyoto Protocol (cf., Conant et al., 2003). Finally, it should also be noted that, compared to the accuracy with which changes in atmospheric carbon content can be detected (less than 1 p.p.m. CO2), changes in soil carbon stocks are very uncertain. A release of 0.5 kg (C) from 1 m2 of soil surface is equivalent to an increase in CO, concentration of about 125 p.p.m. in the air column above the same area.

将土壤碳含量估算为平均碳浓度和容重的乘积可能会导致相当大的高估。需要在同一样品上测量碳浓度和土壤质量,并在取平均值之前计算每个样品的碳含量。当主要目标是确定库存随时间的变化时,这种偏差的影响可能较小(但仍大于零)。方差和平均碳含量呈显著正相关,尽管一些样地表现出比这种关系预测的高得多的变异性,这可能是它们特定的样地历史、森林管理和微地形的结果。由于平均值和方差之间的比例关系,在温带和北方森林通常遇到的碳储量范围内,检测土壤碳储量固定变化所需的样品数量与站点平均碳含量直接变化,从不足10到数千不等。这就提出了一个重要的问题,即如何在如此不同的条件范围内推导出最佳抽样策略,以实现《京都议定书》的目标。总体而言,在土壤剖面很少或没有受到干扰的低碳森林场地上,即使使用简单的随机抽样(即每个采样点约50个样本),也可以在可管理的样本量下检测到土壤总有机碳随时间变化的0.5 kg (C) m(-2)量级。更有效的策略将揭示更小的差异。在受干扰的森林地点(犁过的,被风吹过的),这不再是可能的(所需的样本量远远大于100)。在粗糙的风成沉积物(沙丘)上发育的土壤,或在以前轮作的掩埋原木或收获残留物存在的地方,土壤碳也可能表现出很大的空间变异性。一般来说,富含碳的土壤总是需要大量的样品。在这些站点上,简单的随机抽样不太可能是首选的方法,因为其固有的低效率。更复杂的方法,如在相对较小的地块内成对重新采样(例如,参见Ellert et al., 2001)可能会显著减少样本量,并导致检测到碳储量随时间的较小差异。然而,还有待证明的是,在这些地点,有效抽样设计的应用将导致发现与《京都议定书》目标相关的差异(参见,Conant等人,2003年)。最后,还应该指出的是,与可以检测大气碳含量变化的准确性(小于1 pm CO2)相比,土壤碳储量的变化非常不确定。从1平方米的土壤表面释放0.5公斤(C)相当于在同一地区以上的空气柱中增加约125ppm的CO浓度。
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引用次数: 0
Fractional contributions by autotrophic and heterotrophic respiration to soil-surface CO2 efflux in Boreal forests. 北方森林自养和异养呼吸对土壤表面CO2外排的贡献率。
Pub Date : 2005-01-01 DOI: 10.4324/9780203501344-12
P. Högberg, A. Nordgren, M. Högberg, M. Ottosson‐Löfvenius, Bhupinderpal-Singh, P. Olsson, S. Linder
Soil-surface CO2 efflux ('soil respiration') accounts for roughly two-thirds of forest ecosystem respiration, and can be divided into heterotrophic and autotrophic components. Conventionally, the latter is defined as respiration by plant roots. In Boreal forests, however, fine roots of trees are invariably covered by ectomycorrhizal fungi, which by definition are heterotrophs, but like the roots, receive sugars derived from photosynthesis. There is also a significant leaching of labile carbon compounds from the ectomycorrhizal roots. It is, therefore, more meaningful in the context of carbon balance studies to include mycorrhizal fungi and other mycorrhizosphere organisms, dependent on the direct flux of labile carbon from photosynthesis, in the autotrophic component. Hence, heterotrophic activity becomes reserved for the decomposition of more complex organic molecules in litter and other forms of soil organic matter. In reality, the complex situation is perhaps best described as a continuum from strict autotrophy to strict heterotrophy. As a result of this, and associated methodological problems, estimates of the contribution of autotrophic respiration to total soil respiration have been highly variable. Based on recent stand-scale tree girdling experiments we have estimated that autotrophic respiration in boreal forest accounts for up to 50-65% of soil respiration during the snow-free part of the year. Girdling experiments and studies of the delta(13)C of the soil CO2 efflux show that there is a lag of a few days between the carbon uptake by photosynthesis and the release by autotrophic soil respiration of the assimilated carbon. In contrast, estimates of 'bomb 14C' and other approaches have suggested that it takes years to decades between carbon uptake via photosynthesis and the bulk of soil heterotrophic activity. Temperature is normally used as a driver in models of soil processes and it is often assumed that autotrophic soil activity is more sensitive to temperature than is heterotrophic activity, but this is questionable. It is inherently difficult to make a precise separation of autotrophic and heterotrophic respiration from soils. The partitioning between these two components is highly variable in space and time, and taxonomic autotrophs and heterotrophs may perform the function of the other group to some degree. Care should be taken to disturb as little as possible the delicate plant-microbe-soil system, and this speaks for non-intrusive isotopic methods. There are, however, problems in modelling the flux of isotopes through this complex system. Girdling of tree stands is a very robust alternative approach to make the distinction between autotrophic and heterotrophic activities, but ultimately kills the trees and cannot, therefore, always be used. A further development would be to block the phloem sugar transport reversibly. We propose that thus assumption needs further critical testing.
土壤表面二氧化碳外排(“土壤呼吸”)约占森林生态系统呼吸的三分之二,可分为异养和自养成分。通常,后者被定义为植物根系的呼吸作用。然而,在北方森林中,树木的细根总是被外生菌根真菌覆盖,根据定义,这些真菌是异养的,但像根一样,从光合作用中获得糖。外生菌根中挥发性碳化合物也有显著的浸出作用。因此,在碳平衡研究的背景下,将菌根真菌和其他依赖光合作用产生的不稳定碳的直接通量的菌根圈生物纳入自养成分更有意义。因此,异养活动成为在凋落物和其他形式的土壤有机质中分解更复杂的有机分子的保留。在现实中,复杂的情况也许最好描述为从严格自养到严格异养的连续体。由于这一点以及相关的方法问题,自养呼吸对土壤呼吸总量的贡献的估计一直是高度可变的。根据最近的林分尺度树木环生试验,我们估计在一年中无雪的部分,北方森林的自养呼吸占土壤呼吸的50-65%。土壤CO2外排δ (13)C的环带试验和研究表明,光合作用对碳的吸收与土壤自养呼吸对同化碳的释放之间存在数天的滞后。相比之下,对“炸弹14C”的估计和其他方法表明,通过光合作用吸收碳和大部分土壤异养活动之间需要几年到几十年的时间。温度通常被用作土壤过程模型的驱动因素,通常假设自养土壤活动比异养土壤活动对温度更敏感,但这是值得怀疑的。从土壤中精确地分离自养呼吸和异养呼吸本身就是困难的。这两个成分之间的分配在空间和时间上是高度可变的,分类学上的自养和异养可能在一定程度上执行另一组的功能。应该注意尽可能少地干扰脆弱的植物-微生物-土壤系统,这说明了非侵入性同位素方法。然而,在模拟同位素通过这一复杂系统的通量时存在一些问题。树桩围护是区分自养和异养活动的一种非常可靠的替代方法,但最终会杀死树木,因此不能总是使用。进一步的发展将是可逆地阻断韧皮部糖的运输。我们认为这种假设需要进一步的严格检验。
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引用次数: 28
Measurement of CO2 exchange between Boreal forest and the atmosphere. 测量北方森林与大气之间的二氧化碳交换。
Pub Date : 2005-01-01 DOI: 10.4324/9780203501344-8
T. A. Black, D. Gaumont-Guay, R. Jassal, B. Amiro, P. Jarvis, S. Gower, F. Kelliher, A. Dunn, S. Wofsy
The Boreal forest is the world's second largest forested biome occupying the circumpolar region between 50 degrees N and 70 degrees N. This heterogeneous biome stores about 25% of all terrestrial carbon. We have reviewed EC measurements of CO2 exchange between the atmosphere and Boreal forests, and assessed progress in understanding the controlling processes. We have assessed net ecosystem productivity, the net balance between net primary productivity and heterotrophic respiration, measured using the EC method, for 38 Boreal forest sites. Gross ecosystem productivity has been estimated by adding day-time EC-measured CO2 fluxes to respiration estimated from night-time relationships between respiration and temperature. Maximum midday values of gross ecosystem productivity vary from 33 pmol m(-2) s(-1) for aspen to 6 micromol m(-2) s(-1) for larch stands. Long-term EC flux measurements, ongoing at nine Boreal sites, have shown the strong impact of spring weather and growing season water balance on annual net ecosystem productivity. Estimation of net biome production, incorporating the effects of disturbance resulting from forest fires and logging, has progressed significantly in recent years. After disturbance, summer measurements in Boreal chronosequences suggest that it takes about 10 years before growing season carbon uptake offsets the decomposition emissions. Small-scale exchange rate measurements using chambers and manipulative experiments such as stem girdling and soil heating help to understand the processes and mechanisms playing major roles in the carbon balance of terrestrial ecosystems. Aircraft EC flux measurements, convective boundary layer carbon budgets, and (13)C/12C changes in the atmosphere play an important role in validating estimates of regional carbon exchange based on scaled up EC measurements. Atmospheric inverse models are an important approach to studying regional and global carbon balance but need further improvement to yield reliable quantitative results.
北方森林是世界上第二大森林生物群落,位于北纬50度至北纬70度之间的环极地区,这种异质性生物群落储存了大约25%的陆地碳。我们回顾了欧共体对大气与北方森林之间二氧化碳交换的测量,并评估了在了解控制过程方面取得的进展。我们评估了38个北方针叶林样地的净生态系统生产力,即净初级生产力和异养呼吸之间的净平衡,使用EC方法测量。总生态系统生产力是通过将白天ec测量的二氧化碳通量加入由夜间呼吸和温度之间的关系估算的呼吸作用中来估算的。总生态系统生产力的最大正午值从杨树的33 μ mol m(-2) s(-1)到落叶松林的6 μ mol m(-2) s(-1)不等。在9个北纬地区站点进行的长期EC通量测量显示,春季天气和生长期水分平衡对年净生态系统生产力有强烈影响。考虑到森林火灾和伐木造成的干扰的影响,对净生物群落产量的估计近年来取得了重大进展。干扰后,北方森林夏季时间序列的测量结果表明,生长季碳吸收需要大约10年才能抵消分解排放。利用室和可操作实验(如茎束和土壤加热)进行的小规模汇率测量有助于了解在陆地生态系统碳平衡中起主要作用的过程和机制。飞机EC通量测量、对流边界层碳收支和大气(13)C/12C变化在验证基于放大EC测量的区域碳交换估算中发挥了重要作用。大气反演模型是研究区域和全球碳平衡的重要方法,但需要进一步改进才能得到可靠的定量结果。
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引用次数: 28
Fractional contributions by autotrophic and heterotrophic respiration to soil-surface CO2 efflux in Boreal forests. 北方森林自养和异养呼吸对土壤表面CO2外排的贡献率。
Pub Date : 2005-01-01
Peter Högberg, Anders Nordgren, Mona N Högberg, Mikaell Ottosson-Löfvenius, Bhupinderpal-Singh, Per Olsson, Sune Linder

Soil-surface CO2 efflux ('soil respiration') accounts for roughly two-thirds of forest ecosystem respiration, and can be divided into heterotrophic and autotrophic components. Conventionally, the latter is defined as respiration by plant roots. In Boreal forests, however, fine roots of trees are invariably covered by ectomycorrhizal fungi, which by definition are heterotrophs, but like the roots, receive sugars derived from photosynthesis. There is also a significant leaching of labile carbon compounds from the ectomycorrhizal roots. It is, therefore, more meaningful in the context of carbon balance studies to include mycorrhizal fungi and other mycorrhizosphere organisms, dependent on the direct flux of labile carbon from photosynthesis, in the autotrophic component. Hence, heterotrophic activity becomes reserved for the decomposition of more complex organic molecules in litter and other forms of soil organic matter. In reality, the complex situation is perhaps best described as a continuum from strict autotrophy to strict heterotrophy. As a result of this, and associated methodological problems, estimates of the contribution of autotrophic respiration to total soil respiration have been highly variable. Based on recent stand-scale tree girdling experiments we have estimated that autotrophic respiration in boreal forest accounts for up to 50-65% of soil respiration during the snow-free part of the year. Girdling experiments and studies of the delta(13)C of the soil CO2 efflux show that there is a lag of a few days between the carbon uptake by photosynthesis and the release by autotrophic soil respiration of the assimilated carbon. In contrast, estimates of 'bomb 14C' and other approaches have suggested that it takes years to decades between carbon uptake via photosynthesis and the bulk of soil heterotrophic activity. Temperature is normally used as a driver in models of soil processes and it is often assumed that autotrophic soil activity is more sensitive to temperature than is heterotrophic activity, but this is questionable. It is inherently difficult to make a precise separation of autotrophic and heterotrophic respiration from soils. The partitioning between these two components is highly variable in space and time, and taxonomic autotrophs and heterotrophs may perform the function of the other group to some degree. Care should be taken to disturb as little as possible the delicate plant-microbe-soil system, and this speaks for non-intrusive isotopic methods. There are, however, problems in modelling the flux of isotopes through this complex system. Girdling of tree stands is a very robust alternative approach to make the distinction between autotrophic and heterotrophic activities, but ultimately kills the trees and cannot, therefore, always be used. A further development would be to block the phloem sugar transport reversibly. We propose that thus assumption needs further critical testing.

土壤表面二氧化碳外排(“土壤呼吸”)约占森林生态系统呼吸的三分之二,可分为异养和自养成分。通常,后者被定义为植物根系的呼吸作用。然而,在北方森林中,树木的细根总是被外生菌根真菌覆盖,根据定义,这些真菌是异养的,但像根一样,从光合作用中获得糖。外生菌根中挥发性碳化合物也有显著的浸出作用。因此,在碳平衡研究的背景下,将菌根真菌和其他依赖光合作用产生的不稳定碳的直接通量的菌根圈生物纳入自养成分更有意义。因此,异养活动成为在凋落物和其他形式的土壤有机质中分解更复杂的有机分子的保留。在现实中,复杂的情况也许最好描述为从严格自养到严格异养的连续体。由于这一点以及相关的方法问题,自养呼吸对土壤呼吸总量的贡献的估计一直是高度可变的。根据最近的林分尺度树木环生试验,我们估计在一年中无雪的部分,北方森林的自养呼吸占土壤呼吸的50-65%。土壤CO2外排δ (13)C的环带试验和研究表明,光合作用对碳的吸收与土壤自养呼吸对同化碳的释放之间存在数天的滞后。相比之下,对“炸弹14C”的估计和其他方法表明,通过光合作用吸收碳和大部分土壤异养活动之间需要几年到几十年的时间。温度通常被用作土壤过程模型的驱动因素,通常假设自养土壤活动比异养土壤活动对温度更敏感,但这是值得怀疑的。从土壤中精确地分离自养呼吸和异养呼吸本身就是困难的。这两个成分之间的分配在空间和时间上是高度可变的,分类学上的自养和异养可能在一定程度上执行另一组的功能。应该注意尽可能少地干扰脆弱的植物-微生物-土壤系统,这说明了非侵入性同位素方法。然而,在模拟同位素通过这一复杂系统的通量时存在一些问题。树桩围护是区分自养和异养活动的一种非常可靠的替代方法,但最终会杀死树木,因此不能总是使用。进一步的发展将是可逆地阻断韧皮部糖的运输。我们认为这种假设需要进一步的严格检验。
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引用次数: 0
Trace gas and CO2 contributions of northern peatlands to global warming potential. 北部泥炭地微量气体和二氧化碳对全球变暖潜势的贡献。
Pub Date : 2005-01-01
Tuomas Laurila, Mika Aurela, Annalea Lohila, Juha-Pekka Tuovinen
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引用次数: 0
Contribution of trace gases nitrous oxide (N2O) and methane (CH4) to the atmospheric warming balance of forest biomes. 微量气体氧化亚氮(N2O)和甲烷(CH4)对森林生物群落大气变暖平衡的贡献
Pub Date : 2005-01-01
Rainer Brumme, Louis V Verchot, Pertti J Martikainen, Christopher S Potter
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引用次数: 0
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