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Possibility of teaching Bacillus subtilis ethylene glycol utilization 传授枯草芽孢杆菌乙二醇利用的可能性
Pub Date : 2021-03-29 DOI: 10.2139/ssrn.3814481
Wenfa Ng
Teaching a microorganism to use a new substrate necessitates constructing a utilization pathway that connects the substrate to a metabolite in central carbon metabolism. The process is not straightforward and fraught with hiccups such as lack of carbon flux to make a firm connection to central carbon metabolism. Ethylene glycol is one promising alternative substrate given its availability as hydrolysis product from polyethylene terephthalate (PET) plastic waste recycling. But, what is lacking thus far is a utilization pathway that could mediate its transformation into a metabolite that could plug into central carbon metabolism and activate cell growth. This write-up attempts to review prior work on developing ethylene glycol as an alternative feedstock for a bioeconomy as well as origins of ethylene glycol role as a sole carbon source for some microorganisms. While focus is inevitably on developing a “plug-in” pathway for connecting ethylene glycol to central carbon metabolism, preliminary work in this endeavor also needs to focus on understanding any possible metabolic deficiency in the chosen microbial chassis that could make substrate utilization metabolic engineering that much tougher.
教会微生物使用新的底物需要构建一个利用途径,将底物与中心碳代谢的代谢物连接起来。这个过程并不简单,而且充满了诸如缺乏碳通量等问题,无法与中心碳代谢建立牢固的联系。乙二醇是一种很有前途的替代底物,因为它是聚对苯二甲酸乙二醇酯(PET)塑料废物回收的水解产物。但是,目前缺乏的是一种利用途径,可以介导其转化为代谢物,进入中心碳代谢,激活细胞生长。这篇文章试图回顾以前的工作,开发乙二醇作为生物经济的替代原料,以及乙二醇作为一些微生物的唯一碳源的作用的起源。虽然重点不可避免地集中在开发连接乙二醇和中心碳代谢的“插入式”途径上,但这项努力的初步工作还需要集中在了解所选微生物底盘中可能存在的代谢缺陷,这些缺陷可能使底物利用代谢工程变得更加困难。
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引用次数: 0
The Study of Carboxylic Acids in Flowers and Leaves of Veronica Chamaedrys L. and Veronica Teucrium L. 山茱萸和山茱萸花和叶中羧酸的研究。
Pub Date : 2020-12-30 DOI: 10.15587/2519-4852.2020.221078
А. Kovaleva, T. Ilina, A. Raal, A. Osmachko, O. Goryacha, Y. Rozhkovskyi
The aim. The genus Veronica (Veronica L.), family Plantaginaceae Juss. in the flora of Ukraine is represented by 64 species; Veronica chamaedrys L. and Veronica teucrium L. are widespread in the Kharkiv region. Plants are used in folk medicine as expectorants, anti-inflammatory, diaphoretic, anti-allergic, choleretic, antispasmodic, anticonvulsant, diuretic, sedative, wound healing and antibacterial agents. The aim of this work was to study the carboxylic acids of flowers and leaves of Veronica chamaedrys L. and flowers and leaves of Veronica teucrium L. Materials and methods. The objects of the study were flowers and leaves of Veronica chamaedrys L. and Veronica teucrium L., harvested in the flowering phase in 2018 in Kharkiv region, Ukraine. The study of carboxylic acids was performed by chromatography-mass spectrometry on a 6890N MSD/DS Agilent Technologies chromatograph with a 5973N mass spectrometric detector. Identification of acid methyl esters was performed using data from the mass spectrum library NIST 05 and Willey 2007 in combination with programs for the identification of AMDIS and NIST; also compared the retention time with the retention time of standard compounds. Results. In the flowers and leaves of Veronica teucrium L. 35 carboxylic acids were identified, the total content of which is 5.55 % and 2.93 %, respectively. 31 and 32 carboxylic acids were identified in the flowers and leaves of Veronica chamaedrys L., their total content is 5.39 % and 7.45 %, respectively. Conclusions. It is established that the flowers and leaves of Veronica chamaedrys L. are characterized by a higher content of carboxylic acids compared to the flowers and leaves of Veronica teucrium L. As chemotaxonomic markers of flowers and leaves the following compounds can be used: α-furanic acid for Veronica chamaedrys L.; veratric, 4-hydroxybenzylacetic and syringic acids for Veronica teucrium L. The obtained results will be the basis for further chemotaxonomic studies
的目标。车前草属车前草科车前草属。在乌克兰的植物区系中有64种;维罗妮卡和维罗妮卡在哈尔科夫地区分布广泛。在民间医学中,植物被用作祛痰、抗炎、抗汗、抗过敏、降胆、抗痉挛、抗惊厥、利尿、镇静、伤口愈合和抗菌药物。本研究的目的是研究香菖蒲花叶和白菖蒲花叶中羧酸的含量。研究对象是2018年在乌克兰哈尔科夫地区开花阶段收获的味罗妮卡(Veronica chamaedrys L.)和味罗妮卡(Veronica teucrium L.)的花和叶。羧酸的研究采用色谱-质谱联用技术,采用6890N MSD/DS Agilent Technologies色谱仪和5973N质谱检测器。结合AMDIS和NIST鉴定程序,利用NIST 05和Willey 2007的质谱库数据进行酸性甲酯鉴定;并与标准品的保留时间进行了比较。结果。在花叶中鉴定出35种羧酸,总含量分别为5.55%和2.93%。在香槠花和叶中分别鉴定出31种和32种羧酸,总含量分别为5.39%和7.45%。结论。结果表明,香槠花和叶的羧酸含量均高于香槠花和叶。作为香槠花和叶的化学分类标记物,可选用α-呋喃酸作为香槠花和叶的化学分类标记物;本研究结果将为进一步的化学分类研究奠定基础
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引用次数: 0
Interstellar Formation of Biorelevant Pyruvic Acid (CH 3COCOOH) 生物相关丙酮酸(ch3cooh)的星际形成
Pub Date : 2020-08-12 DOI: 10.2139/ssrn.3652328
N. Kleimeier, A. Eckhardt, P. Schreiner, R. Kaiser
Summary Pyruvic acid represents a key molecule in prebiotic chemistry to form metabolites and amino acids. Without liquid water on the early Earth, endogenous formation of pyruvic acid is unlikely, and an exogenous delivery constitutes an appealing alternative. However, despite the detection of more than 200 molecules in space, pyruvic acid is elusive. Here, we describe its formation by barrierless recombination of hydroxycarbonyl (HOCO⋅) and acetyl (CH3CO⋅) radicals in ices of acetaldehyde (CH3CHO) and carbon dioxide (CO2) modeling interstellar conditions driven by cosmic rays. Exploiting isotopically labeled ices and photoionization reflectron time-of-flight mass spectrometry, the reaction products were selectively photoionized in the temperature-programmed desorption phase and isomers discriminated based on their ionization energies. This reveals a key reaction pathway for pyruvic acid synthesis through non-equilibrium reactions in interstellar cold molecular clouds and star-forming regions, thus offering a unique entry point to abiotic organic synthesis in deep space.
丙酮酸是益生元化学中形成代谢物和氨基酸的关键分子。地球早期没有液态水,内源性形成丙酮酸是不可能的,外源性输送构成了一个有吸引力的替代方案。然而,尽管在太空中发现了200多个分子,丙酮酸还是难以捉摸。在这里,我们通过在乙醛(CH3CHO)和二氧化碳(CO2)的冰中羟基羰基(HOCO⋅)和乙酰基(CH3CO⋅)自由基的无障碍重组描述了它的形成,模拟了宇宙射线驱动的星际条件。利用同位素标记冰和光电离反射飞行时间质谱法,反应产物在程序升温解吸阶段被选择性光电离,并根据其电离能区分异构体。揭示了在星际冷分子云和恒星形成区通过非平衡反应合成丙酮酸的关键反应途径,为深空非生物有机合成提供了一个独特的切入点。
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引用次数: 19
The Transmission and Toxicity of Phpma Copolymer-Bound Doxorubicin Containing Exosomes Derived from Adherent Two-Dimensional Human Breast Adenocarcinoma Cell Line and Three-Dimensional Spheroids 粘附二维人乳腺腺癌细胞系和三维球体衍生的Phpma共聚物结合含阿霉素的外泌体的传播和毒性
Pub Date : 2020-01-01 DOI: 10.2139/ssrn.3692012
Kristýna Gunár, L. Kotrchová, M. Filipová, Tereza Krunclová, R. Pola, E. Randárová, T. Etrych, O. Janoušková
Exosomes are endosomally-derived vesicles. Their composition is significantly affected by physiological state of the donor cells and can reflect changes in the cell microenvironment as well as of the whole body. Exosomes can manipulate local and systemic environment to influence cancer progression and dissemination and also modulate immune response. Moreover, exosomes have been investigated as possible transmission nanocarriers for therapeutics. In this study, exosome loading was achieved by incubation of free doxorubicin (DOX) and DOX bound to N -(2-hydroxypropyl) methacrylamide (HPMA)-based copolymers (pHPMA) with an adherent human breast adenocarcinoma cell line and its derived spheroids. Both free and p(HPMA)-bound DOX were successfully loaded into exosomes with different loading efficiencies. Spheroids secreted significantly more exosomes than adherent cells. These exosomes differed in abundance of their exosomal markers. The adherent cell line showed a decreased viability after treatment with free DOX or pHPMA bound-DOX-loaded exosomes, confirming the successful transmission of both, free cancerostatics and polymer bound cancerostatics by exosomes. To our knowledge, this is the first proof of pHPMA-drug conjugates secretion by extracellular vesicles, providing a new perspective on the transmission of drug/polymeric drugs in tumor tissue via exosomes. Interestingly, results obtained within the manuscript contribute to the explanation of high therapeutic activity of pH-sensitive polymer-DOX conjugates, which we suppose, is based on the exosome-based cell-to-cell delivery within the tumor tissue after the passive accumulation of the polymer-drug system.
外泌体是内体细胞衍生的囊泡。它们的组成受供体细胞生理状态的显著影响,可以反映细胞微环境以及整个机体的变化。外泌体可以操纵局部和全身环境,影响癌症的进展和传播,并调节免疫反应。此外,外泌体已被研究作为治疗药物的可能传播纳米载体。在这项研究中,外泌体负载是通过将游离阿霉素(DOX)和DOX结合到N -(2-羟丙基)甲基丙烯酰胺(HPMA)基共聚物(pHPMA)与贴壁的人乳腺腺癌细胞系及其衍生球体孵育来实现的。游离DOX和p(HPMA)结合DOX均以不同的装载效率成功装载到外泌体中。球状细胞分泌的外泌体明显多于贴壁细胞。这些外泌体的外泌体标记物的丰度不同。用游离DOX或pHPMA结合-DOX负载的外泌体处理后,贴壁细胞系的活力下降,证实了外泌体成功传递了游离抗癌剂和聚合物结合抗癌剂。据我们所知,这是phpma -药物偶联物通过细胞外囊泡分泌的第一个证据,为药物/聚合物药物通过外泌体在肿瘤组织中的传播提供了新的视角。有趣的是,论文中获得的结果有助于解释ph敏感聚合物- dox偶联物的高治疗活性,我们认为这是基于聚合物药物系统被动积累后肿瘤组织内基于外泌体的细胞间传递。
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引用次数: 1
Polymerization-Driven Hierarchical Co-Assembly of Micelles for Access to Mesoporous Hollow Metal Coordination Bio-Polymers 介孔中空金属配位生物聚合物中胶束的聚合驱动分层共组装
Pub Date : 2019-09-04 DOI: 10.2139/ssrn.3448140
Yan Ai, Yuxiou You, Facai Wei, Xiaolin Jiang, Zhuolei Han, Jing Cui, Hao Luo, Yucen Li, Zhixin Xu, Jun Yang, Q. Bao, C. Jing, Jianwei Fu, Jiangong Cheng, Shaohua Liu
Bio-inspired hierarchical self-assembly provides elegant and powerful bottom-up strategies for the creation of complex materials. However, the current self-assembly approaches for natural bio-compounds often result in materials with limited diversity and complexity in architecture as well as microstructure. Here, we develop a novel coordination polymerization-driven hierarchical assembly of micelle strategy, using phytic acid-based natural compounds as an example, for the spatially controlled fabrication of metal coordination bio-polymers. The aliphatic surfactant pentadecafluorooctanoic acid and block co-polymer of polystyrene-b-poly (ethylene oxide) are assembled into two kinds of the discrete amphiphilic micelles. They evolve into hollow vesicles surrounding with spherical micelles, driven by the strong interaction triggered by coordination polymerization of ferric phytate precursors, which in turn facilitate the growth of precursors in a confined space. Consequently, the synchronous control on morphology and mesoscale structure for bio-compounds was successfully achieved for the first time. The resultant ferric phytate bio-polymer nanospheres feature hollow architecture, ordered meso-channels of ~12 nm, high surface area of 401 m2g-1, and large pore volume of 0.53 cm3g-1. As an advanced anode material, this bio-derivative metal coordination polymer delivers a remarkable reversible capacity of 540 mAh g-1 at 50 mA g-1, good rate capability and cycling stability for the use in sodium ion batteries. This study holds great potential of the design of new complex bio-materials with supramolecular chemistry.
生物启发的分层自组装为复杂材料的创建提供了优雅而强大的自下而上策略。然而,目前天然生物化合物的自组装方法往往导致材料在结构和微观结构上的多样性和复杂性有限。本文以植酸为基础的天然化合物为例,开发了一种新型的配位聚合驱动的胶束分层组装策略,用于空间控制金属配位生物聚合物的制造。将脂肪族表面活性剂五氟辛酸和聚苯乙烯-聚环氧乙烷嵌段共聚物组装成两种离散的两亲性胶束。在植酸铁前体配位聚合引发的强相互作用的驱动下,它们演变成被球形胶束包围的中空囊泡,这反过来又促进了前体在有限空间中的生长。因此,首次成功地实现了对生物化合物形态和中尺度结构的同步控制。所制得的植酸铁生物聚合物纳米球具有中空结构、~12 nm有序介孔、401 m2g-1的高表面积和0.53 cm3g-1的大孔体积等特点。作为一种先进的阳极材料,这种生物衍生物金属配位聚合物在50ma g-1时具有540 mAh g-1的可逆容量,具有良好的倍率能力和循环稳定性,适用于钠离子电池。该研究在设计具有超分子化学的新型复杂生物材料方面具有很大的潜力。
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引用次数: 0
A Unique Methionine-Rich Protein - Aragonite Crystal Complex: Structure and Mechanical Functions of the Pinctada Fucata Bivalve Hinge Ligament 一种独特的富含蛋氨酸的蛋白质-文石晶体复合物:富喀塔双壳合叶韧带的结构和力学功能
Pub Date : 2019-07-23 DOI: 10.2139/ssrn.3424545
Michio Suzuki, K. Kubota, R. Nishimura, L. Negishi, K. Komatsu, H. Kagi, Katya Rehav, S. Cohen, I. Pinkas
The bivalve hinge ligament holds the two shells together. The ligament functions as a spring to open the shells after they were closed by the adductor muscle. The ligament is a mineralized tissue that bears no resemblance to any other known tissue. About half the ligament is composed of a protein-rich matrix, and half of long and extremely thin segmented aragonite crystals. Here we study the hinge ligament of the pearl oyster Pinctada fucata. FIB SEM shows that the 3D organization is remarkably ordered. The full sequence of the major protein component contains a continuous segment of 30 repeats of MMMLPD. There is no known homologous protein. Knockdown of this protein prevents crystal formation, demonstrating that the integrity of the matrix is necessary for crystals to form. X-ray diffraction shows that the aragonite crystals are more aligned in the compressed ligament, indicating that the crystals may be actively contributing to the elastic properties. The fusion interphase that joins the ligament to the shell nacre is composed of a prismatic mineralized tissue with a thin organic-rich layer at its center. Nanoindentation of the dry interphase shows that the elastic modulus of the nacre adjacent to the interphase gradually decreases until it approximates that of the interphase. The interphase modulus slightly increases until it matches the ligament. All these observations demonstrate that the ligament shell complex is a remarkable biological tissue that has evolved unique properties that enable bivalves to open their shell effectively innumerable times during the lifetime of the animal.
双壳铰链韧带将两个壳连接在一起。在被内收肌关闭后,韧带的作用就像弹簧一样打开壳。韧带是一种矿化组织,与任何其他已知组织都不相似。大约一半的韧带由富含蛋白质的基质组成,一半由长而极薄的分节文石晶体组成。这里我们研究了珍珠牡蛎的铰链韧带。FIB扫描电镜显示,三维组织明显有序。主要蛋白成分的完整序列包含MMMLPD的30个重复的连续片段。没有已知的同源蛋白。敲除这种蛋白质可以阻止晶体的形成,这表明基质的完整性是晶体形成的必要条件。x射线衍射显示文石晶体在压缩韧带中排列更加整齐,表明晶体可能对弹性性能有积极的贡献。连接韧带和贝壳珠层的融合间期由棱柱状矿化组织组成,其中心有一层薄薄的富含有机物的层。干间相的纳米压痕表明,相邻间相的珠层的弹性模量逐渐减小,直到接近间相的弹性模量。间期模量略有增加,直至与韧带相匹配。所有这些观察都表明,韧带壳复合体是一种非凡的生物组织,它已经进化出独特的特性,使双壳类动物在其一生中能够无数次有效地打开外壳。
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引用次数: 3
Impact of Automated Guidance for Mechanical Control of Herbicide Resistant Weeds in Corn 自动导引对玉米抗除草剂杂草机械防治的影响
Pub Date : 2017-06-26 DOI: 10.2139/ssrn.2992647
T. Griffin, J. Lowenberg-Deboer
This study evaluated the feasibility of reintroducing mechanical weed control as an alter-native for herbicide- resistance weed infestations. The production practice tested included row cultivation with a separate banded spray application using high- accuracy automated guidance systems. A range of ground speeds were tested for the row cultivation opera-tion, each with a different per acre cost and timeliness penalty. A typical eastern Corn Belt farm with a rotation of corn and soybean served as the base for the linear pro-gramming model. It was found that if the farmer was willing to reintroduce tillage, row cultivation conducted at higher operating speeds in conjunction with separate banded application could be justified under a range of relatively inexpensive herbicide costs as low as $7 per acre. When effective herbicides were relatively expensive at $30 per acre, the optimal decision would be to use row cultivation and reduce herbicides via banding. At faster ground speeds, the majority of hours devoted to row cultivation shifted to ear-lier time periods so that yield penalties were avoided.
本研究评估了重新引入机械除草作为抗除草剂杂草侵害替代方法的可行性。生产实践测试包括行栽培与一个单独的带状喷雾应用使用高精度自动制导系统。在行栽培操作中测试了一系列的地面速度,每英亩的成本和及时性都不同。以典型的东部玉米带玉米和大豆轮作农场为基础,建立线性规划模型。研究发现,如果农民愿意重新采用耕作方式,在相对便宜的除草剂成本低至每英亩7美元的情况下,以更高的作业速度进行的行耕作与单独的带状施用是合理的。当有效的除草剂相对昂贵时,每英亩30美元,最佳的决定是采用行种植,并通过捆扎来减少除草剂。在更快的地面速度下,用于行耕的大部分时间转移到更早的时间段,从而避免了产量损失。
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引用次数: 6
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Biochemistry eJournal
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