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GlycomicsDB - A Data Integration Platform for Glycans and their Strucutres. GlycomicsDB -一个聚糖及其结构的数据集成平台。
Pub Date : 2011-01-01 Epub Date: 2011-04-19 DOI: 10.2174/1874431101105010009
Mahesh Visvanathan, Sasidhar R Siddam, In-Hee Lee, Gerald H Lushington, George R Bousfield

Glycomics is a discipline of biology that deals with the structure and function of glycans (or carbohydrates). Analytical techniques such as mass spectrometry (MS) and nuclear magnetic resonance (NMR) are having a significant impact on the field of glycomics. However, effective progress in glycomics research requires collaboration between laboratories to share experimental data, structural information of glycans, and simulation results. Herein we report the development of a web-based data management system that can incorporate large volumes of data from disparate sources and organize them into a uniform format for users to store and access. This system enables participating laboratories to set up a shared data repository which members of interdisciplinary teams can access. The system is able to manage and share raw MS data and structural information of glycans.The database is available at http://www.glycomics.bcf.ku.edu.

糖组学是研究聚糖(或碳水化合物)结构和功能的一门生物学学科。质谱(MS)和核磁共振(NMR)等分析技术对糖组学领域产生了重大影响。然而,糖组学研究的有效进展需要实验室之间的合作,共享实验数据、聚糖结构信息和模拟结果。在此,我们报告了基于web的数据管理系统的开发,该系统可以合并来自不同来源的大量数据,并将它们组织成统一的格式供用户存储和访问。该系统使参与的实验室能够建立一个跨学科团队成员可以访问的共享数据存储库。该系统能够管理和共享原始质谱数据和聚糖的结构信息。该数据库可在http://www.glycomics.bcf.ku.edu上获得。
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引用次数: 2
Micro soft tissues visualization based on x-ray phase-contrast imaging. 基于x射线相衬成像的显微软组织可视化。
Pub Date : 2011-01-01 Epub Date: 2011-07-27 DOI: 10.2174/1874431101105010019
Lu Zhang, Shuqian Luo

The current imaging methods have a limited ability to visualize microstructures of biological soft tissues. Small lesions cannot be detected at the early stage of the disease. Phase contrast imaging (PCI) is a novel non-invasive imaging technique that can provide high contrast images of soft tissues by the use of X-ray phase shift. It is a new choice in terms of non-invasively revealing soft tissue details. In this study, the lung and hepatic fibrosis models of mice and rats were used to investigate the ability of PCI in microstructures observation of soft tissues. Our results demonstrated that different liver fibrosis stages could be distinguished non-invasively by PCI. The three-dimensional morphology of a segment of blood vessel was constructed. Noteworthy, the blood clot inside the vessel was visualized in three dimensions which provided a precise description of vessel stenosis. Furthermore, the whole lung airways including the alveoli were obtained. We had specifically highlighted its use in the visualization and assessment of the alveoli. To our knowledge, this was the first time for non-invasive alveoli imaging using PCI. This finding may offer a new perspective on the diagnosis of respiratory disease. All the results confirmed that PCI will be a valuable tool in biological soft tissues imaging.

目前的成像方法对生物软组织微结构的可视化能力有限。在疾病的早期不能发现小的病变。相衬成像(PCI)是一种新型的无创成像技术,它可以利用x射线相移提供软组织的高对比度图像。它是一种新的选择,在非侵入性显示软组织的细节。本研究采用小鼠和大鼠肺和肝纤维化模型,探讨PCI对软组织微结构观察的能力。我们的结果表明,不同的肝纤维化分期可以通过PCI无创区分。构建了一段血管的三维形态。值得注意的是,血管内的血凝块在三维上可视化,提供了血管狭窄的精确描述。此外,还获得了包括肺泡在内的整个肺气道。我们特别强调了它在肺泡的可视化和评估中的应用。据我们所知,这是首次使用PCI进行无创肺泡成像。这一发现可能为呼吸道疾病的诊断提供新的视角。这些结果证实了PCI将是一种有价值的生物软组织成像工具。
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引用次数: 13
STAT-HI: A Socio-Technical Assessment Tool for Health Informatics Implementations~!2009-11-28~!2010-01-22~!2010-09-14~! STAT-HI:卫生信息实施的社会技术评估工具2009-11-28 2010-01-22 2010-09-14
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004040214
P. Scott
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引用次数: 0
A Sociotechnical Approach to Evaluating the Impact of ICT on Clinical Care Environments~!2009-11-30~!2010-01-25~!2010-09-14~! 从社会技术角度评价ICT对临床护理环境的影响2009-11-30 2010-01-25 2010-09-14
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004040202
Julie Li
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引用次数: 0
A Sociotechnical Approach to Evaluating the Impact of ICT on Clinical Care Environments. 评估信息和通信技术对临床护理环境影响的社会技术方法。
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004010202
Julie Li

Introduction: Process-supporting information technology holds the potential to increase efficiency, reduce errors, and alter professional roles and responsibilities in a manner which allows improvement in the delivery of patient care. However, clashes between the model of health care work inscribed in these tools with the actual nature of work has resulted in staff resistance and decreased organisational uptake of ICT, as well as the facilitation of unexpected and negative effects in efficiency and patient safety. Sociotechnical theory provides a paradigm against which workflow and transfusion of ICT in healthcare could be better explored and understood.

Design: This paper will conceptualise a formative, multi-method longitudinal evaluation process to explore the impact of ICT with an appreciation of the relationship between the social and technical systems within a clinical department.

Method: Departmental culture, including clinical work processes and communication patterns will be thoroughly explored before system implementation using both quantitative and qualitative research methods. Findings will be compared with post implementation data, which will incorporate measurement of safety and workflow efficiency indicators.

Discussion: Sociotechnical theory provides a paradigm against which workflow and transfusion of ICT in healthcare could be better explored and understood. However, sociotechnical and multimethod approaches to evaluation do not exist without criticism. Inherent in the protocol are limitations of sociotechnical theory and criticism of the multimethod approach; testing of the methodology in real clinical settings will serve to verify efficacy and refine the process.

导言:支持流程的信息技术具有提高效率、减少差错、改变专业角色和责任的潜力,从而改善对病人的护理。然而,这些工具所体现的医疗保健工作模式与实际工作性质之间的冲突,导致了员工的抵触情绪,降低了组织对信息和通信技术的采用率,并对效率和患者安全产生了意想不到的负面影响。社会技术理论提供了一个范例,可以据此更好地探索和理解医疗保健领域的工作流程和信息与传播技术:本文将构思一个形成性的、多方法的纵向评估过程,以探讨信息和通信技术的影响,同时了解临床科室内社会和技术系统之间的关系:方法:在系统实施之前,将采用定量和定性研究方法对科室文化,包括临床工作流程和沟通模式进行深入探讨。研究结果将与实施后的数据进行比较,其中包括安全和工作流程效率指标的测量:讨论:社会技术理论提供了一个范例,可据以更好地探索和理解医疗保健领域的工作流程和信息与通信技术的应用。然而,社会技术和多方法评估方法并非没有缺陷。本方案中包含了社会技术理论的局限性和对多方法方法的批评;在实际临床环境中对该方法进行测试将有助于验证其有效性并完善流程。
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引用次数: 0
Patients at the centre: methodological considerations for evaluating evidence from health interventions involving patients use of web-based information systems. 以患者为中心:对涉及患者使用网络信息系统的健康干预证据进行评估的方法学考虑。
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004010188
Elizabeth Cummings, Paul Turner

Building an evidence base for healthcare interventions has long been advocated as both professionally and ethically desirable. By supporting meaningful comparison amongst different approaches, a good evidence base has been viewed as an important element in optimising clinical decision-making and the safety and quality of care. Unsurprisingly, medical research has put considerable effort into supporting the development of this evidence base, and the randomised controlled trial has become the dominant methodology. Recently however, a body of research has begun to question, not just this methodology per se, but also the extent to which the evidence it produces may marginalise individual patient experiences, priorities and perceptions.Simultaneously, the widespread adoption and utilisation of information systems (IS) in health care has also prompted initiatives to develop a stronger base of evidence about their impacts. These calls have been stimulated both by numerous system failures and research expressing concerns about the limitations of information systems methodologies in health care environments. Alongside the potential of information systems to produce positive, negative and unintended consequences, many measures of success, impact or benefit appear to have little to do with improvements in care, health outcomes or individual patient experiences.Combined these methodological concerns suggest the need for more detailed examination. This is particularly the case, given the prevalence within contemporary clinical and IS discourses on health interventions advocating the need to put the 'patient at the centre' by engaging them in their own care and/or 'empowering' them through the use of information systems.This paper aims to contribute to these on-going debates by focusing on the socio-technical processes by which patients' interests and outcomes are measured, defined and evaluated within health interventions that involve them using web-based information systems. The paper outlines an integrated approach that aims to generate evidence about the impact of these types of health interventions that are meaningful at both individual patient and patient cohort levels.

长期以来,为医疗保健干预措施建立证据库一直被视为专业和道德上的理想选择。通过支持对不同方法进行有意义的比较,良好的证据基础被视为优化临床决策、提高医疗安全和质量的重要因素。不难理解,医学研究为支持这一证据基础的发展付出了巨大努力,随机对照试验已成为主流方法。然而,最近有一系列研究开始质疑这种方法本身,而且质疑其所产生的证据在多大程度上可能会将患者的个人经历、优先考虑事项和看法边缘化。这些呼吁是由大量系统故障以及对医疗环境中信息系统方法局限性的担忧所引起的。除了信息系统可能产生积极的、消极的和非预期的后果之外,许多衡量成功、影响或效益的标准似乎与医疗服务、健康结果或病人个人经历的改善关系不大。鉴于当代临床和信息系统论述中关于健康干预的普遍主张,即有必要通过让患者参与自身护理和/或通过使用信息系统 "增强 "患者的能力,将 "患者置于中心",本文旨在通过关注在使用基于网络的信息系统的健康干预中衡量、定义和评估患者利益和结果的社会技术过程,为这些正在进行的辩论做出贡献。本文概述了一种综合方法,该方法旨在生成有关这类健康干预措施影响的证据,这些证据在患者个体和患者群体层面都具有意义。
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引用次数: 0
Broadening the socio-technical horizons of health informatics. 拓宽卫生信息学的社会技术视野。
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004010179
Andrew Georgiou, Sue Whetton
This special socio-technical supplement of the Open Medical Informatics Journal showcases a number of innovative and unique research approaches that highlight the current scope of socio-technical perspectives in the health informatics discipline. In just three short decades the discipline of health informatics has evolved from a primary focus on the “application of computers to all fields of medicine – medical care, medical education and medical research” [1] to an increasing focus on socio-technical issues where “people and organizational issues are critical” (page 79) [2]. The incorporation of socio-technical perspectives arose as researchers sought to analyse the reasons behind the limited successes of many early health information management systems. The application of socio-technical analyses demonstrated that effective systems implementation required an appreciation of both technological and organisational factors. While technical elements continue to be core to health informatics knowledge, socio-technical research seeks to further our understanding of the organisational and cultural factors inherent in the introduction of information management systems into the health care environment. Early socio-technical research included reflections both on its role in knowledge development and its application to the practice of health informatics [3-5]. Research and discussion often took the form of a critique of the established technology focussed approaches. However, as Coiera notes, “for the contribution of socio-technical systems thinking to be more than simply a means of critiquing current practices and systems, it needs to also contribute to the process of developing new and more effective systems” (page S98) [6]. The papers in this supplement highlight how many of today’s researchers have adopted a socio-technical focus as an established and credible methodology, not just for critiquing past mistakes, but for developing an understanding of key success factors in the development and implementation of new systems. The papers also show how researchers are using the basic concepts and multi-method socio-technical approaches, and applying these to a range of research situations. Chhanabhai and Holt demonstrate the universal relevance of socio-technical perspectives in their analysis of information and communications technologies in developing countries [7]. The authors present an overview of current methods through which healthcare information is communicated to the public within these countries. Niazkhani applies socio-technical analyses to a clinical environment. This exploratory research draws on socio-technical theories to provide insights into the differences between the perceptions of surgical and non-surgical clinicians in relation to Computerised Provider Order Entry (CPOE) systems [8]. The papers by Scott [9] and Li [10] highlight the increasing interest of today’s researchers in making connections between academic research and the prof
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引用次数: 6
Towards an integrative cognitive-socio-technical approach in health informatics: analyzing technology-induced error involving health information systems to improve patient safety. 迈向健康信息学的综合认知-社会-技术方法:分析涉及健康信息系统的技术引起的错误,以提高患者安全。
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004010181
E M Borycki, A W Kushniruk

The purpose of this paper is to argue for an integration of cognitive and socio-technical approaches to assessing the impact of health information systems. Historically, health informatics research has examined the cognitive and socio-technical aspects of health information systems separately. In this paper we argue that evaluations of health information systems should consider aspects related to cognition as well as socio-technical aspects including impact on workflow (i.e. an integrated view). Using examples from the study of technology-induced error in healthcare, we argue for the use of simulations to evaluate the cognitive-socio-technical impacts of health information technology [36]. Implications of clinical simulations and analysis of cognitive-social-technical impacts are discussed within the context of the system development life cycle to improve health information system design, implementation and evaluation.

这篇论文的目的是论证认知和社会技术方法的整合,以评估卫生信息系统的影响。从历史上看,卫生信息学研究分别考察了卫生信息系统的认知和社会技术方面。在本文中,我们认为卫生信息系统的评估应考虑与认知相关的方面以及社会技术方面,包括对工作流程的影响(即集成视图)。利用医疗保健中技术引起的错误研究中的例子,我们主张使用模拟来评估卫生信息技术的认知-社会-技术影响[36]。临床模拟和认知-社会-技术影响分析的含义在系统开发生命周期的背景下讨论,以改善卫生信息系统的设计,实施和评估。
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引用次数: 32
Patients at the Centre: Methodological Considerations for Evaluating Evidence from Health Interventions Involving Patients Use of Web-Based Information Systems~!2009-08-03~!2010-01-12~!2010-09-14~! 中心的患者:基于网络信息系统的健康干预证据评估的方法学考虑2010-08-03 2010-01-12 2010-09-14
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004040188
E. Cummings
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引用次数: 0
The Disparity Information and Communication Technology for Developing Countries has in the Delivery of Healthcare Information~!2009-08-03~!2009-11-10~!2010-09-14~! 发展中国家信息通信技术在医疗卫生信息传递方面的差距
Pub Date : 2010-09-15 DOI: 10.2174/1874431101004040195
P. Chhanabhai
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引用次数: 0
期刊
The open medical informatics journal
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