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Functional Genomics and Insights into Trypanosoma cruzi Gene ExpressionRegulation 克氏锥虫基因表达调控的功能基因组学研究
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010148
A. Ávila, S. Goldenberg
The regulation of gene expression in trypanosomatids is predominantly post-transcriptional. Polycistronic tran- scripts are processed by the addition of a common 5'-spliced leader and polyadenylation. However, the processed mRNAs are not necessarily functionally related, suggesting the existence of mechanisms for the degradation or storage of untrans- latable mRNAs. Determination of the TriTryps (Leishmania major, Trypanosoma brucei and Trypanosoma cruzi) genome sequences has allowed the identification of genes encoding potential regulatory proteins. This review discusses some of the mechanisms and regulatory elements involved in cytoplasmic gene expression regulation in Trypanosoma cruzi. We also discuss how functional genomic tools have contributed toward determining the role played by RNA binding protein complexes, supporting the concept of "post-transcriptional RNA operons" or "RNA regulons". This suggests the existence of interconnected regulatory networks in the parasite, in which RNA granules act as protagonists in cytoplasmic mRNA metabolism.
锥虫基因表达的调控主要是转录后调控。多顺反电子转录体是通过添加一个共同的5'拼接前导体和聚腺苷酸化来处理的。然而,加工的mrna并不一定在功能上相关,这表明不可翻译mrna的降解或储存存在机制。通过对大利什曼原虫、布氏锥虫和克氏锥虫基因组序列的测定,可以鉴定编码潜在调控蛋白的基因。本文就克氏锥虫细胞质基因表达调控的相关机制和调控元件作一综述。我们还讨论了功能基因组工具如何有助于确定RNA结合蛋白复合物所起的作用,支持“转录后RNA操纵子”或“RNA调控子”的概念。这表明在寄生虫中存在相互关联的调控网络,其中RNA颗粒在细胞质mRNA代谢中起主要作用。
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引用次数: 0
Trypanosoma cruzi Cysteine Proteases, Acting at the Interface Between the Vascular and Immune Systems, Influence Pathogenic Outcome in Experimental Chagas Disease 克氏锥虫半胱氨酸蛋白酶作用于血管和免疫系统界面,影响实验性恰加斯病的致病结果
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010060
J. Scharfstein
Trypanosoma cruzi proteases were object of intensive structural and functional characterization in the past de- cades. The celebration of the Chagas disease centenarian makes it opportune to review the foundations of molecular re- search on cruzipain, a major lysosomal cysteine protease. Acting as a virulence factor, cruzipain promotes intracellular parasitism. In addition, tissue culture trypomastigotes (TCTs) exploit the enzymatic versatility of cruzipain to liberate kinin peptides from kininogen molecules associated to heparan sulfate proteoglycans. Acting as paracrine agonists, the re- leased kinins (eg, lysyl-bradykinin) potentiate parasite invasion of cardiovascular cells through the signaling of hetero- trimeric G-protein coupled bradykinin receptors (BKRs). Generation of kinins also stimulates immunity, implying that cruzipain activity brings mutual benefits for the host-parasite relationship. Analysis of the dynamics of inflammation re- vealed that TCTs induce secretion of KC/MIP-2 by macrophages via signaling of Toll-like 2 receptors (TLR2). Acting on proximal microvascular beds, CXC chemokines evoke plasma extravasations by activating endothelium/neutrophils via CXCR2. Diffusion of plasma proteins (including kininogens) through extracellular matrices allow for cruzipain-dependent generation of vasoactive kinins, which then intensify interstitial edema through the activation of endothelial BK2R. Extent of edematogenic inflammation is counter-regulated by angiotensin converting enzyme (ACE), a kinin-degrading metal- lopeptidase. Acting at the interface between the vascular and the immune systems, kinins activate BK2R of dendritic cells, which then migrate to T- cell rich areas of secondary lymphoid tissues, where they induce immunoprotective type-1 effec- tor T cells. Insight into the mechanisms regulating proteolysis in extravascular sites of infection may help to identify sus- ceptibility markers of chronic heart disease.
克氏锥虫蛋白酶在过去的几十年是密集的结构和功能表征的对象。恰加斯病百岁老人的庆祝活动使我们有机会回顾一种主要的溶酶体半胱氨酸蛋白酶——苦杏仁蛋白酶的分子研究基础。作为毒力因子,杏仁蛋白酶促进细胞内寄生。此外,组织培养的锥乳虫(tct)利用杏仁蛋白酶的多功能性从与硫酸肝素蛋白聚糖相关的激肽原分子中释放激肽肽。释放的激肽(如赖氨酸-缓激肽)作为旁分泌激动剂,通过异三聚体g蛋白偶联的缓激肽受体(BKRs)信号传导,增强寄生虫对心血管细胞的侵袭。激肽的产生也会刺激免疫,这意味着cruzipain的活性为宿主-寄生虫关系带来了互利。炎症动力学分析显示,tct通过toll样2受体(TLR2)信号传导诱导巨噬细胞分泌KC/MIP-2。CXC趋化因子作用于近端微血管床,通过CXCR2激活内皮/中性粒细胞,引起血浆外渗。血浆蛋白(包括激肽原)通过细胞外基质的扩散,使得血管活性激肽依赖于cruzipin的产生,进而通过内皮细胞BK2R的激活加剧间质水肿。血管紧张素转换酶(ACE)是一种可降解激肽的金属肽酶,可对致水肿炎症的程度进行反向调节。激肽作用于血管和免疫系统之间的界面,激活树突状细胞的BK2R,然后这些细胞迁移到富含T细胞的次级淋巴组织区域,在那里它们诱导T细胞产生免疫保护性的1型效应。深入了解血管外感染部位蛋白水解的调节机制可能有助于识别慢性心脏病的易感标志物。
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引用次数: 4
Cell Signaling During Trypanosoma cruzi Development in Triatominae 锥虫科克氏锥虫发育过程中的细胞信号传导
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010188
M. Silva-Neto, P. Fampa, Carlo Donato Caiaffa-Neto, A. Carneiro, G. Atella
The year 2009 is the centennial anniversary of the original description of Chagas disease by Carlos Chagas. During the last 100 years, several advances have occurred regarding our knowledge of the development of Trypanosoma cruzi and its travel along the gut of Triatominae vectors. We have also witnessed the completion of both the human and parasite genome projects; the genome of one of Chagas disease vectors, Rhodnius prolixus, is currently being sequenced. The development of T. cruzi in triatomine gut relies on several biochemical and molecular processes. The biochemistry of blood digestion and the molecular and biological aspects of parasite development are well known. However, several sig- naling molecules are generated during blood digestion, and their effects on parasite biology are only beginning to be un- derstood. Here, we will summarize our current knowledge in this area with an emphasis on heme and bioactive lipids. In addition, we will highlight some recently described members of the parasite signaling machinery, which were identified through high-throughput studies, but whose ligands are unknown thus far. Finally, we will discuss some potential aspects for future investigation in this area that may strengthen our view of such a concomitant biological process in the next years.
2009年是卡洛斯·查加斯最初描述查加斯病的一百周年纪念日。在过去的100年里,我们对克氏锥虫的发展及其沿锥虫病媒肠道传播的认识取得了一些进展。我们还见证了人类和寄生虫基因组计划的完成;目前正在对恰加斯病的一种病媒——长Rhodnius的基因组进行测序。克氏锥虫在triatomine肠道中的发育依赖于几个生化和分子过程。血液消化的生物化学和寄生虫发育的分子和生物学方面是众所周知的。然而,在血液消化过程中产生了一些信号分子,它们对寄生虫生物学的影响才刚刚开始被理解。在这里,我们将总结我们目前在这一领域的知识,重点是血红素和生物活性脂质。此外,我们将重点介绍一些最近描述的寄生虫信号机制成员,这些成员是通过高通量研究确定的,但其配体迄今为止是未知的。最后,我们将讨论该领域未来研究的一些潜在方面,这些方面可能会在未来几年加强我们对这种伴随生物过程的看法。
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引用次数: 6
Subcellular proteomics and global analysis of posttranslational modifications to study functional roles of Trypanosoma cruzi molecules 亚细胞蛋白质组学和翻译后修饰的全局分析研究克氏锥虫分子的功能作用
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010167
I. C. Almeida, E. Nakayasu
One century after the discovery of Chagas disease, the treatment for this illness is still based only on two drugs with limited efficacy and severe side effects. In this mini-review, we discuss the application of mass spectrometry (MS)- based proteomic approaches to study the biochemistry and cell biology of etiologic agent of Chagas disease, Trypanosoma cruzi. We focus the discussion in the analysis of subcellular proteomics and posttranslational modifications (PTMs). In re- cent years, subcellular proteomics has brought new insights into the localization of proteins and possible functions of or- ganelles. Thus far, proteomic analysis of reservosomes, ribosomes, detergent-solubilized membranes, and a preparation of an organelle mixture have been performed. In addition, a number of analyses of PTMs of T. cruzi proteins (i.e., histone modifications, phosphorylation, glycosylation, glycosylphosphatidylinositol (GPI)-anchoring, and nitrosylation) have been successfully carried out. The identification of those and other PTMs combined with cutting-edge biochemical, im- munological and cell biology approaches, have allowed a more in-depth understanding of biological and pathophysiologi- cal processes resulting from host cell-parasite interactions.
在发现恰加斯病一个世纪之后,这种疾病的治疗仍然只基于两种药物,疗效有限,副作用严重。本文综述了基于质谱(MS)的蛋白质组学方法在恰加斯病病原克氏锥虫的生物化学和细胞生物学研究中的应用。我们重点讨论了亚细胞蛋白质组学和翻译后修饰(PTMs)的分析。近年来,亚细胞蛋白质组学对蛋白质的定位和细胞器的可能功能有了新的认识。到目前为止,已经进行了贮体、核糖体、清洁剂溶解膜的蛋白质组学分析和细胞器混合物的制备。此外,一些克氏t蛋白的PTMs分析(即组蛋白修饰、磷酸化、糖基化、糖基磷脂酰肌醇(GPI)锚定和亚硝基化)已经成功地进行了。这些和其他PTMs的鉴定结合了尖端的生化、免疫和细胞生物学方法,使得人们对宿主细胞-寄生虫相互作用产生的生物学和病理生理过程有了更深入的了解。
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引用次数: 2
Ecto-Nucleoside Triphosphate Diphosphohydrolase Activities in Trypanosomatids:Possible Roles in Infection, Virulence and Purine Recycling 锥虫体外核苷三磷酸二磷酸水解酶活性:在感染、毒力和嘌呤再循环中的可能作用
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010116
J. Meyer‐Fernandes, D. Cosentino-Gomes, Danielle P. Vieira, A. Lopes
Ecto-nucleoside triphosphate diphosphohydrolases (ecto-NTPDases), also known as ecto-ATPases and/or ecto- apyrases, are integral membrane glycoproteins or soluble enzymes that are dependent on divalent cations. These ecto- enzymes are important ecto-nucleotidases that are characterized by the ability to hydrolyze nucleoside triphosphates and nucleoside diphosphates to the monophosphate form. The hydrolysis of nucleoside monophosphates to nucleosides such as adenosine may then be catalyzed by the action of ecto-5´nucleotidases. The present study reviews the sequential hy- drolysis of ATPADPAMPadenosine catalyzed by these ecto-enzymes from different trypanosomatids. These reactions participate in the salvage of purines in these parasites and simultaneously interfere with the establishment of in- fection and changes in the host immune response.
外核苷三磷酸二磷酸水解酶(外核苷三磷酸二磷酸水解酶),也称为外核苷三磷酸水解酶和/或外核苷磷酸酶,是一种依赖于二价阳离子的完整膜糖蛋白或可溶性酶。这些外链酶是重要的外链核苷酸酶,其特点是能够将三磷酸核苷和二磷酸核苷水解为单磷酸形式。单磷酸核苷水解为核苷,如腺苷,可以通过外链5′核苷酸酶的作用进行催化。本研究综述了不同锥虫体外酶催化atp - padpam - padenosine的顺序水解。这些反应参与了这些寄生虫嘌呤的回收,同时干扰了感染的建立和宿主免疫反应的变化。
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引用次数: 13
Endosymbiosis in Trypanosomatids as a Model to Study Cell Evolution 锥虫体内的内共生是研究细胞进化的一种模式
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010139
M. Motta, M. Cristina
Some trypanosomatids harbor a symbiotic bacterium, which maintains a close association with the host, consti- tuting an excellent model to study organelle origin and cellular evolution. Molecular data show that all endosymbiont- harboring trypanosomatids are grouped together in a single phylogenetic branch. According to rRNA sequences, symbi- onts of different species are similar, being classified in the s division of Proteobacteria, thus suggesting that a single evo- lutionary event gave rise to the symbiosis in the Trypanosomatidae family. The bacterium is enclosed by two unit mem- branes and presents a reduced peptidoglycan layer, which is essential for cell division and morphological maintenance. Regarding the protein composition, the number of intramembrane particles in the endosymbiont envelope is similar to that described for Gram-negative bacteria. Lipid analyses of purified endosymbionts show absence of sterols and indicate phosphatidylcholine as a major component of the envelope, as described in other intracellular bacteria. The presence of the endosymbiont is associated with distinct ultrastructural and physico-chemical alterations in the trypanosomatid and in- fluences the protozoan interaction with the insect host and mammalian cells. Symbiont-containing trypanosomatids are able to infect and to replicate inside fibroblasts and macrophages, whose microbicidal activity was deactivated by HIV-1 infection. The symbiosis in trypanosomatids is characterized by intensive metabolic exchanges; the bacterium expresses enzymes and metabolic precursors that complete essential biosynthetic pathways of the protozoan. Conversely, the sym- biont is capable of obtaining part of the required energetic molecules from the host glycosomes. Taken together data sug- gest that endosymbiosis in trypanosomatids represents an interesting model to study cell evolution.
一些锥虫体内含有一种共生细菌,这种细菌与宿主保持着密切的联系,为研究细胞器起源和细胞进化提供了一个很好的模型。分子数据表明,所有的内共生体窝藏的锥虫都被归为一个单一的系统发育分支。根据rRNA序列,不同物种的共生体是相似的,被划分在变形菌门的s部,这表明一个单一的进化事件产生了锥虫科的共生体。细菌被两个单位膜包围,并呈现一个减少的肽聚糖层,这是细胞分裂和形态维持所必需的。关于蛋白质组成,内共生菌包膜中的膜内颗粒数量与革兰氏阴性菌相似。纯化的内共生体的脂质分析显示缺乏甾醇,并表明磷脂酰胆碱是包膜的主要成分,与其他细胞内细菌一样。内共生体的存在与锥虫体内不同的超微结构和物理化学变化有关,并影响原生动物与昆虫宿主和哺乳动物细胞的相互作用。含有共生体的锥虫能够感染成纤维细胞和巨噬细胞并在其内部复制,这些细胞的杀微生物活性被HIV-1感染而失活。锥虫体内的共生以密集的代谢交换为特征;细菌表达完成原生动物基本生物合成途径的酶和代谢前体。相反,同生体能够从宿主糖体中获得部分所需的能量分子。综合数据表明,锥虫体内的内共生是研究细胞进化的一种有趣的模式。
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引用次数: 21
Trypanosomatid-Encoded Inhibitors of Peptidases: Unique Structural Features and Possible Roles as Virulence Factors 锥虫编码的肽酶抑制剂:独特的结构特征和可能的毒力因子作用
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010132
A. Lima, J. Mottram
Trypanosomatids rely on peptidases as potent virulence factors and were recently found to contain a unique set of natural peptidase inhibitors not found in higher eukaryotes or in yeast, but present in a limited number of bacteria. Cha- gasin, identified in Trypanosoma cruzi, is a tight-binding, high affinity inhibitor of papain-like cysteine peptidases that has an Ig-like fold and inactivates target enzymes through a limited number of contacts mediated by a few conserved residues on three exposed loops. Chagasin homologues in other protozoa and bacteria are mostly single genes named ICPs, and to- gether with chagasin compose family I42 at MEROPS, the peptidase and peptidase inhibitors database (http://merops.sanger.ac.uk/). The biological function of chagasin/ICPs seems to vary depending on the organism, but generally, the current studies point to a role in controlling the activity of endogenous parasite CPs, influencing parasite differentiation, virulence and different aspects of the host response to infection. More recently, natural inhibitors of serine peptidases that share similarity to bacterial ecotins were identified in trypanosomatids and named ISPs. Ecotins are spe- cific to trypsin-fold serine peptidases, enzymes which are not present in trypanosomatids. ISPs are limited to Trypano- somes and Leishmania and to date, only ISP2 proven to have an inhibitory function. In Leishmania, ISP2 seems to control the activity of host SPs at the initial stages of infection in order to ensure subsequent parasite survival in macrophages. The main aspects of chagasin/ICP biochemistry, structure and biological function and the recent findings on ISPs will be covered in this review.
锥虫依赖肽酶作为有效的毒力因子,最近发现含有一组独特的天然肽酶抑制剂,这些抑制剂在高等真核生物或酵母中没有发现,但存在于有限数量的细菌中。Cha- gasin在克氏锥虫中发现,是一种紧密结合、高亲和力的木瓜蛋白酶样半胱氨酸肽酶抑制剂,具有igg样折叠,通过三个暴露环上的少数保守残基介导的有限接触使靶酶失活。其他原生动物和细菌中的Chagasin同源物大多是名为ICPs的单基因,并与MEROPS(肽酶和肽酶抑制剂数据库)中的Chagasin组成家族I42 (http://merops.sanger.ac.uk/)一起。chagasin/ICPs的生物学功能似乎因生物体而异,但总的来说,目前的研究表明其在控制内源性寄生虫CPs的活性、影响寄生虫分化、毒力和宿主对感染反应的不同方面发挥作用。最近,在锥虫中发现了丝氨酸肽酶的天然抑制剂,这些抑制剂与细菌ecotin有相似之处,并命名为ISPs。ecotin特异于胰蛋白酶折叠丝氨酸肽酶,这种酶不存在于锥虫体内。ISPs仅限于锥虫体和利什曼原虫,迄今为止,只有ISP2被证明具有抑制功能。在利什曼原虫中,ISP2似乎在感染的初始阶段控制宿主SPs的活性,以确保随后寄生虫在巨噬细胞中的存活。本文将介绍chagasin/ICP的生物化学、结构和生物学功能的主要方面以及最近在ISPs方面的发现。
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引用次数: 11
Signaling Pathways in Trypanosoma cruzi that Modulate Host Cell Interaction 克氏锥虫调节宿主细胞相互作用的信号通路
Pub Date : 2010-12-10 DOI: 10.2174/1874421401004010077
M. Alves, W. Colli
Members of the Gp85/trans-sialidase (Gp85/TS) superfamily and mucins play an essential role in the invasion of host cells by T. cruzi trypomastigotes. Together, they constitute a large portion of the genome; approximately 700 and 433 genes encode Gp85/TS glycoproteins and mucins (as do a similar amount of pseudogenes), respectively. Gp85/TS proteins bind to a variety of host cell receptors and extracellular matrix components and binding of TS to host cells is in- dependent of their enzymatic activity. Because mucins are the main substrate for TS, their interaction with host cells has been described as carbohydrate-dependent. Complex signaling cascades operate during the infection process within both parasite and host cells, but most research into signaling events has been limited to those of host cells. Much less informa- tion about the parasitic side is available; these pathways will be the subjects of intense research in the near future. Analy- ses of protein kinases and phosphatases in the parasite genome show pathways common to other organisms, but also para- site-specific pathways that should be exploited as candidates for drug targeting.
Gp85/反式唾液酸酶(Gp85/TS)超家族成员和粘蛋白在克氏锥虫(T. cruzi trypomastigotes)侵袭宿主细胞中发挥重要作用。它们共同构成了基因组的很大一部分;大约有700个和433个基因分别编码Gp85/TS糖蛋白和粘蛋白(假基因的数量相似)。Gp85/TS蛋白与多种宿主细胞受体和细胞外基质组分结合,其与宿主细胞的结合依赖于其酶活性。由于粘蛋白是TS的主要底物,它们与宿主细胞的相互作用被描述为碳水化合物依赖性。复杂的信号级联在寄生虫和宿主细胞的感染过程中起作用,但大多数对信号事件的研究仅限于宿主细胞。关于寄生方面的信息少得多;在不久的将来,这些途径将成为深入研究的主题。对寄生虫基因组中蛋白激酶和磷酸酶的分析显示了与其他生物体共同的途径,但也显示了应作为药物靶向候选物的对位点特异性途径。
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引用次数: 3
Effect of Flubendazole on Biotransformation Enzymes Activities in Haemonchus contortus~!2010-03-18~!2010-06-16~!2010-08-07~! 氟苯达唑对弯血蜱生物转化酶活性的影响2010-03-18 2010-06-16 2010-08-07
Pub Date : 2010-08-09 DOI: 10.2174/1874421401004010024
I. Vokřál, V. Křížová, J. Lamka, V. Kubíček, B. Szotáková, M. Várady, M. Nobilis, L. Skálová
The aim of present project was to find out if in vivo contact of Haemonchus contortus with benzimidazole anthelmintic flubendazole (FLU) during treatment of its hosts (sheep) with low doses of FLU affects helminths’ drugmetabolizing enzyme activities. Four groups of lambs, experimentally infected with H. contortus, were treated three-times orally with 0.0, 0.25, 0.50 or 1.00 mg per kg of body weight of FLU in three consecutive days. Twenty four hours after the last FLU dose, the nematodes were isolated, homogenized and subcellular fractions were prepared. In these subcellular fractions, biotransformation of FLU and the activities of carbonyl reducing enzymes and conjugation enzymes were assayed. The results showed that H. contortus enzymes were able to conjugate p-nitrophenol with glucose but not with glucuronic acid. The exposure of H.contortus to FLU (the highest FLU dose) caused a significant increase in activities of FLU reductases, D,L-glyceraldehyde reductases and glutathion S-transferases.
本研究旨在探讨在低剂量流感治疗猪(羊)时,弯曲血蜱与苯并咪唑类驱虫药氟苯达唑(FLU)的体内接触是否会影响其药物代谢酶的活性。对四组实验感染扭曲嗜血杆菌的羔羊,连续3天口服每公斤体重0.0、0.25、0.50或1.00 mg的流感病毒。最后一次给药24小时后,分离线虫,匀浆,制备亚细胞组分。在这些亚细胞组分中,测定了流感的生物转化以及羰基还原酶和偶联酶的活性。结果表明,H. contortus酶能将对硝基苯酚与葡萄糖偶联,但不能与葡萄糖醛酸偶联。暴露于流感(最高流感剂量)后,流感还原酶、D、l -甘油醛还原酶和谷胱甘肽s转移酶的活性显著增加。
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引用次数: 4
Biological Roles of Peptidases in Trypanosomatids 肽酶在锥虫体内的生物学作用
Pub Date : 2010-03-18 DOI: 10.2174/1874421401004010005
Alane Beatriz Vermelho, M. Branquinha, C. M. d'Avila-Levy, A. L. Santos, Edilma Paraguai de Souza Dias, A. C. Melo
In this review, we report the recent developments in the characterization of peptidases and their possible biological functions in the Trypanosomatidae family. The focus will be on peptidases from Trypanosoma cruzi, Leishmania spp., African trypanosomes and plant and insect trypanosomatids. There are numerous events in parasite development where the involvement of peptidases has been established, and they will be approached in the present review. Also in this review we will discuss the central roles have been proposed for peptidases in diverse processes such as virulence, host cell interaction and invasion, catabolism of host proteins, differentiation, cell cycle progression and both stimulation and evasion of host immune responses.
在这篇综述中,我们报告了肽酶的表征及其在锥虫科可能的生物学功能的最新进展。重点将是克氏锥虫、利什曼原虫、非洲锥虫以及植物和昆虫锥虫的肽酶。在寄生虫发育的许多事件中,肽酶的参与已被确定,它们将在本综述中进行探讨。此外,在这篇综述中,我们将讨论肽酶在多种过程中的核心作用,如毒力、宿主细胞相互作用和侵袭、宿主蛋白质的分解代谢、分化、细胞周期进程以及刺激和逃避宿主免疫反应。
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引用次数: 18
期刊
The open parasitology journal
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