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[Influence of transcranial electromagnetic brain stimulation on development of conditioned reflex in rats]. [经颅电磁脑刺激对大鼠条件反射发育的影响]。
Pub Date : 2015-03-01
V O Samoilov, E B Shadrin, E B Filippova, Ya Katsnelson, H Backhoff, M Eventov

The influence of transcranial electromagnetic stimulation on the development of an active avoidance reflex with painful reinforcement in laboratory rats is investigated. It is shown, that an exposure of the rats' brain to electromagnetic radiation in the millimeter range ((λ = 5,6 and 7,1 mm), modulated as a series of low-frequency pulses, leads to a suppression of the development of the conditioned avoidance reflex occurred in 50% of cases. In other 25% of cases irradiation leads to inhibition of reflex development. Transcranial electromagnetic stimulation after intraperitoneal injection of the blocking agent of serotonergic receptors (kitryl) has no influence on reflex development. Electromagnetic brain stimulation does not influence reflex retention in the case when it has been acquired. Based on the data obtained it is assumed that transcranial electromagnetic stimulation promotes the development of serotonin, exerting an inhibiting effect on the formation of temporal bindings of the studied conditioned reflex.

研究了经颅电磁刺激对实验大鼠疼痛强化型主动回避反射发展的影响。结果表明,将大鼠的大脑暴露在毫米范围((λ = 5,6和7,1 mm)的电磁辐射中,以一系列低频脉冲调制,导致50%的情况下条件回避反射的发展受到抑制。在其他25%的病例中,辐射导致反射发育抑制。腹腔注射5 -羟色胺能受体阻滞剂(kitryl)后经颅电磁刺激对反射发育无影响。电磁脑刺激对已经获得的反射保留没有影响。根据获得的数据,我们假设经颅电磁刺激促进血清素的发展,对所研究的条件反射的时间绑定的形成产生抑制作用。
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引用次数: 0
[Modelling of Drosophila gap gene network under Bcd morphogen variation]. [Bcd形态变异下果蝇gap基因网络的建模]。
Pub Date : 2015-03-01
S A Andreev, M G Samsonova, V V Gursky

Expression patterns of segmentation genes are formed under the influence of maternal transcription factor gradients, which initiate spatially localized expression in the cascade of segmentation genes. Bcd is one of these activators. We have studied one model of regulation in the gap gene network by varying the concentration of this protein. We have shown that the known gap gene network topology is not sufficient to explain experimental data on the shifts exhibited by the hb anterior expression domain by change in Bcd concentration in the embryo. As the result of modeling with these experimental data taken into account, a new topology is obtained that determines the correct shifts of the hb expression domain. These results suggest that interactions among the three hb, Kr and gt genes are key regulatory factors for the valid behaviour of the hb expression pattern with Bcd concentration changes. This study made it possible to specify the limits of validity for phenomenological models of gene networks.

片段基因的表达模式是在母体转录因子梯度的影响下形成的,它启动了片段基因级联中的空间定位表达。Bcd就是其中一种活化剂。我们已经研究了一种通过改变这种蛋白的浓度来调节gap基因网络的模型。我们已经证明,已知的间隙基因网络拓扑结构不足以解释胚胎中Bcd浓度变化引起的hb前表达域变化的实验数据。考虑到这些实验数据的建模结果,获得了确定hb表达域正确移位的新拓扑。这些结果表明,hb、Kr和gt基因之间的相互作用是hb表达模式随Bcd浓度变化的有效行为的关键调控因素。这项研究使它有可能指定基因网络的现象学模型的有效性限制。
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引用次数: 0
[The dynamics of feed-forward loop depends on regulator type in indirect pathway]. [间接通路中前馈回路的动力学取决于调节器类型]。
Pub Date : 2015-03-01
M A Duk, A M Samsonov, M G Samsonova

Gene networks contain a recurring motif, called the feed-forward loop, in which a transcription factor regulates target expression directly and indirectly via the second regulator. Here we present the results of mathematical modeling of feed-forward loops with either the transcription factor or miRNA as a repressor in the indirect pathway. We showed that the substitution of the transcription factor with miRNA changes the dynamic behavior of the feed-forward loop and lends new properties critical for biological system functioning.

基因网络包含一个反复出现的基序,称为前馈回路,其中一个转录因子通过第二个调节器直接或间接地调节目标表达。在这里,我们展示了在间接途径中转录因子或miRNA作为抑制因子的前馈回路的数学建模结果。我们发现用miRNA替代转录因子改变了前馈回路的动态行为,并赋予生物系统功能至关重要的新特性。
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引用次数: 0
[Circular dichroism of DNA liquid-crystalline dispersion particles]. [DNA液晶分散粒子的圆二色性]。
Pub Date : 2015-03-01
S V Semenov, Yu M Yevdokimov

The optical activity of DNA liquid-crystalline dispersions is being investigated based on a theory for absorption of electromagnetic waves by large molecular aggregates. The impact on the dispersions-optical properties, exerted by the interaction between the complexes of nucleic acid molecules and nanoparticles, is being considered.

基于大分子聚集体吸收电磁波的理论,研究了DNA液晶分散体的光学活性。研究了核酸分子与纳米粒子配合物相互作用对其色散光学特性的影响。
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引用次数: 0
[Comparative analysis of action of nitric oxide as a free radical and its storage form on the state of pro- and antioxidant blood systems]. [一氧化氮作为自由基的作用及其储存形式对亲、抗氧化血液系统状态的比较分析]。
Pub Date : 2015-03-01
A K Martusevich, A G Soloveva, S P Peretyagin, A F Vanin

The dynamics of oxidative metabolism in healthy people's blood (n = 30) under the influence of gaseous nitric oxide and dinitrosyl iron complexes is explored. In all blood samples we studied lipid peroxidation intensity and malonic dialdehyde in plasma and erythrocytes, plasma antioxidant potential and activity of superoxide dismutase. During our investigations it was possible for the first time to identify the peculiarities in the responses of pro- and antioxidant blood systems in vitro to the treatment with nitrogen monoxide as the free. radical and its storage form (as a component of dinitrosyl iron complexes). So, a pronounced prooxidant effect for the gas flow from the "Plazon" apparatus moderately decreases when a tenfold dilution of a NO-containing mixture is made. Gas flow from the experimental NO-generator causes minimal prooxidant action, and injection of water solution of dinitrosyl iron complexes in blood specimens leads to an antioxidant action, as limitation of lipoperoxidation processes in plasma and stimulation of superoxide dismutase in erythrocytes.

探讨了气态一氧化氮和二硝基铁配合物对健康人(n = 30)血液中氧化代谢的影响。在所有血液样本中,我们研究了血浆和红细胞中的脂质过氧化强度和丙二醛,血浆抗氧化电位和超氧化物歧化酶活性。在我们的研究中,第一次有可能确定在体外以一氧化氮作为游离物处理的亲和抗氧化血液系统的反应的特殊性。自由基及其储存形式(作为二硝基铁配合物的组成部分)。因此,当含有no的混合物被稀释十倍时,从“Plazon”装置流出的气体的明显的促进氧化作用会适度降低。来自实验no发生器的气体流动导致最小的促氧化作用,在血液标本中注射二硝基铁络合物的水溶液导致抗氧化作用,因为限制了血浆中的脂质过氧化过程和刺激红细胞中的超氧化物歧化酶。
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引用次数: 0
[Automatic detection of exudates in retinal images based on threshold moving average models]. 基于阈值移动平均模型的视网膜图像渗出物自动检测
Pub Date : 2015-03-01
K Wisaeng, N Hiransakolwong, E Pothiruk

Since exudate diagnostic procedures require the attention of an expert ophthalmologist as well as regular monitoring of the disease, the workload of expert ophthalmologists will eventually exceed the current screening capabilities. Retinal imaging technology is a current practice screening capability providing a great potential solution. In this paper, a fast and robust automatic detection of exudates based on moving average histogram models of the fuzzy image was applied, and then the better histogram was derived. After segmentation of the exudate candidates, the true exudates were pruned based on Sobel edge detector and automatic Otsu's thresholding algorithm that resulted in the accurate location of the exudates in digital retinal images. To compare the performance of exudate detection methods we have constructed a large database of digital retinal images. The method was trained on a set of 200 retinal images, and tested on a completely independent set of 1220 retinal images. Results show that the exudate detection method performs overall best sensitivity, specificity, and accuracy of 90.42%, 94.60%, and 93.69%, respectively.

由于渗出液诊断程序需要专家眼科医生的关注以及对疾病的定期监测,专家眼科医生的工作量最终将超过目前的筛查能力。视网膜成像技术是目前实践筛查能力提供的一个极具潜力的解决方案。本文提出了一种基于模糊图像的移动平均直方图模型的快速、鲁棒的渗出物自动检测方法,并推导出较好的直方图。在对候选渗出物进行分割后,基于Sobel边缘检测器和自动Otsu阈值分割算法对真实渗出物进行剪枝,从而准确定位数字视网膜图像中的渗出物。为了比较渗出物检测方法的性能,我们构建了一个大型的数字视网膜图像数据库。该方法在200张视网膜图像集上进行了训练,并在完全独立的1220张视网膜图像集上进行了测试。结果表明,该方法的灵敏度、特异度和准确度分别为90.42%、94.60%和93.69%。
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引用次数: 0
[The dynamics of pulse rate and biochemical parameters in blood of healthy individuals in relation to Pc5-6 geomagnetic pulsations]. [健康个体脉搏率和血液生化参数与Pc5-6地磁脉动的动态关系]。
Pub Date : 2015-03-01
T A Zenchenko, A A Medvedeva, N N Potolitsyna, O I Parshukova, E R Boiko

Four experiments on long-term monitoring of pulse rate and blood biochemical parameters in four healthy volunteers (women) were conducted. The duration of each experiment was 90 minutes, electrocardiography was performed continuously, taking blood sampling every two minutes. In venous blood the current concentrations of triiodothyronine, cortisol, glucose, stable metabolites of nitrogen oxides (NO(x)) were determined. Synchronicity in oscillations of cortisol and free triiodothyronine levels in the blood of all four volunteers was detected, as well as the presence of the periods of 7-8 min and 15-17 min in the spectra of these biochemical parameters was observed. The periods in the spectra of NO(x) are equal to 7 min, 13 min and 25-30 min. It is shown that the, dynamics of variations in the heart rate is determined mostly by the rhythms of fluctuations in the level of NO(x) in the blood, and the periods in wavelet spectra of these physiological parameters in all four volunteers are close to the periods of their spectra synchronous variations of a. geomagnetic field vector in the frequency range of 0.5-3 mHz. The results obtained in this study indicate that. the presence of nitric oxide and its metabolites in the blood is a biochemical factor, with high probability of its participation in the developmental process of the fine "tuning" of the body to the variations of the geomagnetic field providing synchronization of variations in heart rate and geomagnetic fluctuations in the geomagnetic quiet conditions.

对4名健康志愿者(女性)进行了脉搏率和血液生化指标的长期监测实验。每次实验时间为90分钟,连续进行心电图,每2分钟取一次血。测定静脉血中三碘甲状腺原氨酸、皮质醇、葡萄糖、氮氧化物稳定代谢物NO(x)的当前浓度。在所有四名志愿者的血液中检测到皮质醇和游离三碘甲状腺原氨酸水平振荡的同步性,并在这些生化参数的光谱中观察到7-8分钟和15-17分钟的周期。光谱中的时间不等于7分钟(x), 13分钟,25 - 30分钟。表明,动态心率的变化主要取决于水平的波动的节奏没有血液中(x),和小波的周期谱的这些生理参数在所有四个志愿者接近光谱的时间同步变化的地磁场矢量在0.5 - 3兆赫的频率范围。本研究结果表明。一氧化氮及其代谢物在血液中的存在是一种生化因素,它极有可能参与人体对地磁场变化进行精细“调谐”的发育过程,从而使心率变化和地磁平静条件下的地磁波动同步。
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引用次数: 0
[Brownian dynamics simulations of protein-protein interactions in photosynthetic electron transport chain]. [光合电子传递链中蛋白质-蛋白质相互作用的布朗动力学模拟]。
Pub Date : 2015-03-01
S S Khruschev, A M Abaturova, A N Diakonova, V A Fedorov, D M Ustinin, I B Kovalenko, G Yu Riznichenko, A B Rubin

The application of Brownian dynamics for simulation of transient protein-protein interactions is reviewed. The review focuses on theoretical basics of Brownian dynamics method, its particular implementations, advantages and drawbacks of the method. The outlook for future development of Brownian dynamics-based simulation techniques is discussed. Special attention is given to analysis of Brownian dynamics trajectories. The second part of the review is dedicated to the role of Brownian dynamics simulations in studying photosynthetic electron transport. Interactions of mobile electron carriers (plastocyanin, cytochrome c6, and ferredoxin) with their reaction partners (cytochrome b6f complex, photosystem I, ferredoxin:NADP-reductase, and hydrogenase) are considered.

综述了布朗动力学在蛋白质-蛋白质瞬态相互作用模拟中的应用。综述了布朗动力学方法的理论基础、具体实现方法、优缺点。对布朗动力学模拟技术的发展前景进行了展望。特别注意布朗动力学轨迹的分析。第二部分着重介绍了布朗动力学模拟在光合电子传递研究中的作用。考虑了移动电子载体(质体青素、细胞色素c6和铁氧还蛋白)与其反应伙伴(细胞色素b6f复合物、光系统I、铁氧还蛋白:nadp还原酶和氢化酶)的相互作用。
{"title":"[Brownian dynamics simulations of protein-protein interactions in photosynthetic electron transport chain].","authors":"S S Khruschev,&nbsp;A M Abaturova,&nbsp;A N Diakonova,&nbsp;V A Fedorov,&nbsp;D M Ustinin,&nbsp;I B Kovalenko,&nbsp;G Yu Riznichenko,&nbsp;A B Rubin","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>The application of Brownian dynamics for simulation of transient protein-protein interactions is reviewed. The review focuses on theoretical basics of Brownian dynamics method, its particular implementations, advantages and drawbacks of the method. The outlook for future development of Brownian dynamics-based simulation techniques is discussed. Special attention is given to analysis of Brownian dynamics trajectories. The second part of the review is dedicated to the role of Brownian dynamics simulations in studying photosynthetic electron transport. Interactions of mobile electron carriers (plastocyanin, cytochrome c6, and ferredoxin) with their reaction partners (cytochrome b6f complex, photosystem I, ferredoxin:NADP-reductase, and hydrogenase) are considered.</p>","PeriodicalId":8942,"journal":{"name":"Biofizika","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33212150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Influence of silver and titanium dioxide nanoparticles on the expression of genes of biomarkers of inflammatory responses and apoptosis]. [纳米银和二氧化钛对炎症反应和凋亡生物标志物基因表达的影响]。
Pub Date : 2015-03-01
L A Baranova, E V Zhornik, I D Volotovski

In order to evaluate the toxic effect of silver (AgNP) and titanium dioxide (TiO2) nanoparticles their influence on the expression of genes of biomarkers of inflammatory responses and apoptosis in human lymphocytes was studied. An increase in the IL-6, IL-8, TNF-α and p53 genes expression in the concentration range of silver and titanium dioxide nanoparticles of 10-40 μk g/ml was found. Increased expression of IL-6, IL-8, TNF-α and p53 genes under the nanoparticles action indicates the stimulation of the immune system and of apoptosis, respectively.

为了评估银(AgNP)和二氧化钛(TiO2)纳米颗粒对人淋巴细胞炎症反应和凋亡生物标志物基因表达的影响,研究了它们的毒性作用。IL-6、IL-8、TNF-α和p53基因的表达在10 ~ 40 μk g/ml的浓度范围内均有升高。在纳米颗粒作用下,IL-6、IL-8、TNF-α和p53基因的表达增加,分别表明免疫系统受到刺激,细胞凋亡受到刺激。
{"title":"[Influence of silver and titanium dioxide nanoparticles on the expression of genes of biomarkers of inflammatory responses and apoptosis].","authors":"L A Baranova,&nbsp;E V Zhornik,&nbsp;I D Volotovski","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>In order to evaluate the toxic effect of silver (AgNP) and titanium dioxide (TiO2) nanoparticles their influence on the expression of genes of biomarkers of inflammatory responses and apoptosis in human lymphocytes was studied. An increase in the IL-6, IL-8, TNF-α and p53 genes expression in the concentration range of silver and titanium dioxide nanoparticles of 10-40 μk g/ml was found. Increased expression of IL-6, IL-8, TNF-α and p53 genes under the nanoparticles action indicates the stimulation of the immune system and of apoptosis, respectively.</p>","PeriodicalId":8942,"journal":{"name":"Biofizika","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33212152","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
[Photo-induced processes and reaction dynamics in bacteriorhodopsin]. 细菌视紫红质的光诱导过程和反应动力学。
Pub Date : 2015-03-01
E L Terpugov, O V Degtyareva

In this review we have focused on the advances madein observing the photo-induced response in bacteriorhodopsin and understanding the mechanisms of retinal-protein interactions which are still obscure. We discuss our recent data obtained on the wild type of bacteriorhodopsin and model compounds. This paper presents our new spectroscopic data on amino acids obtained using FT-IR emission spectroscopy. Based on the characteristics of the structure and optical properties of glycine and L-lysine that simulate a photo-induced behaviour of an opsin under natural conditions we tried to find an answer to one of the most important questions concerning the role of protein in the primary processes in bacteriorhodopsin.

本文综述了在观察细菌视紫红质光诱导反应和了解视黄醛-蛋白相互作用机制方面的研究进展。我们讨论了我们最近获得的野生型细菌视紫红质和模型化合物的数据。本文介绍了我们利用傅里叶变换红外发射光谱获得的氨基酸的新光谱数据。基于甘氨酸和l -赖氨酸的结构特征和光学性质,我们试图在自然条件下模拟光诱导视蛋白的行为,找到关于蛋白质在细菌视紫质初级过程中的作用的一个最重要的问题的答案。
{"title":"[Photo-induced processes and reaction dynamics in bacteriorhodopsin].","authors":"E L Terpugov,&nbsp;O V Degtyareva","doi":"","DOIUrl":"","url":null,"abstract":"<p><p>In this review we have focused on the advances madein observing the photo-induced response in bacteriorhodopsin and understanding the mechanisms of retinal-protein interactions which are still obscure. We discuss our recent data obtained on the wild type of bacteriorhodopsin and model compounds. This paper presents our new spectroscopic data on amino acids obtained using FT-IR emission spectroscopy. Based on the characteristics of the structure and optical properties of glycine and L-lysine that simulate a photo-induced behaviour of an opsin under natural conditions we tried to find an answer to one of the most important questions concerning the role of protein in the primary processes in bacteriorhodopsin.</p>","PeriodicalId":8942,"journal":{"name":"Biofizika","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2015-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33212154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Biofizika
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