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Platelet count as a double-edged sword: The impact of thrombocytosis and thrombocytopenia on long-term outcomes after hepatic resection for hepatocellular carcinoma. 血小板计数是一把双刃剑:血小板增多和血小板减少对肝癌肝切除术后长期预后的影响。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-04-22 DOI: 10.5582/bst.2025.01067
Xuedong Wang, Pengfei Wang, Bingjun Tang, Jiahao Xu, Baidong Wang, Lihui Gu, Yingjian Liang, Hongwei Guo, Han Liu, Yifan Wu, Hong Wang, Yahao Zhou, Yongyi Zeng, Yongkang Diao, Lanqing Yao, Mingda Wang, Chao Li, Timothy M Pawlik, Feng Shen, Lei Cai, Tian Yang

The prognostic significance of preoperative platelet counts among patients with hepatocellular carcinoma (HCC) undergoing curative resection remains controversial. The objective of the current study was to investigate the impact of preoperative platelet count on long-term outcomes after HCC resection. Patients who underwent curative-intent resection for HCC between 2000 and 2021 at 10 hepatobiliary centers in China were retrospectively analyzed. Patients were categorized based on platelet count within 2 weeks before surgery: thrombocytopenia (< 100 × 109/L), normal platelet count (100-299 × 109/L), and thrombocytosis (≥ 300 × 109/L). The primary outcomes were overall survival (OS) and recurrence-free survival (RFS). Among 3,116 patients, 655 (21.0%) had thrombocytopenia, 2,374 (76.2%) had normal platelet counts, and 87 (2.8%) had thrombocytosis. The 5-year OS was 52.7%, 56.0%, and 40.2% for thrombocytopenia, normal platelet count, and thrombocytosis groups, respectively (p < 0.001 among the three groups); the corresponding 5-year RFS was 39.3%, 39.3%, and 26.9%, respectively (p = 0.001 among the three groups). Multivariable analysis identified both thrombocytopenia (HR 1.215, 95% CI 1.045-1.413, p = 0.011) and thrombocytosis (HR 1.307, 95% CI 1.130-1.511, p < 0.001) as independent risk factors for worse OS, and thrombocytosis was independently associated with worse RFS (HR 1.523, 95% CI 1.196-1.939, p = 0.001). Both thrombocytopenia and thrombocytosis were associated with worse survival after HCC resection, with thrombocytosis also predicting higher risk of recurrence. Routine preoperative platelet count may serve as a valuable and practical prognostic marker for risk stratification among patients with HCC undergoing resection.

肝细胞癌(HCC)行根治性切除术患者术前血小板计数的预后意义仍有争议。本研究的目的是探讨术前血小板计数对肝细胞癌切除术后长期预后的影响。回顾性分析了2000年至2021年间在中国10个肝胆中心接受HCC治疗的患者。根据术前2周内血小板计数将患者分为血小板减少(< 100 × 109/L)、正常血小板计数(100-299 × 109/L)和血小板增多(≥300 × 109/L)。主要结局是总生存期(OS)和无复发生存期(RFS)。在3116例患者中,655例(21.0%)有血小板减少症,2374例(76.2%)血小板计数正常,87例(2.8%)有血小板增多症。血小板减少组、血小板计数正常组和血小板增多组的5年OS分别为52.7%、56.0%和40.2%(三组间p < 0.001);相应的5年RFS分别为39.3%、39.3%和26.9%(三组间p = 0.001)。多变量分析发现血小板减少(HR 1.215, 95% CI 1.045-1.413, p = 0.011)和血小板增多(HR 1.307, 95% CI 1.130-1.511, p < 0.001)是较差OS的独立危险因素,血小板增多与较差RFS独立相关(HR 1.523, 95% CI 1.196-1.939, p = 0.001)。血小板减少和血小板增多都与HCC切除术后较差的生存有关,血小板增多也预示着更高的复发风险。术前常规血小板计数可作为肝癌切除术患者危险分层的有价值和实用的预后指标。
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引用次数: 0
Advancing precision medicine in immune checkpoint blockade for HIV/AIDS: Current strategies and future directions. 推进艾滋病免疫检查点阻断的精准医学:当前策略和未来方向。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-04-29 DOI: 10.5582/bst.2025.01072
Xiangyi Tang, Cheng Wang, Xiling Zhang, Qibin Liao, Hongzhou Lu

Acquired immunodeficiency syndrome (AIDS)/human immunodeficiency virus (HIV) patients experience significant increase in their survival and decline in the mortality with the advent of antiretroviral therapy (ART). Nonetheless, ART alone still cannot completely cure AIDS/HIV patients. Furthermore, the virus remains latent in resting CD4+T cells for extended periods, posing a continuous threat to AIDS/HIV patients. Immune checkpoint blockades (ICBs), as a promising immunotherapy, inaugurate new pathways for AIDS/HIV cure or remission given their capability to break down the latency limit of HIV, and promote the regeneration and activation of HIV-specific T cells. However, not all AIDS/HIV patients respond to immune checkpoint inhibitors (ICIs), similar to that encountered in cancer patients, accompanied by the risk of severe immune-related adverse events (irAEs) in some cases. Accordingly, the present study was conducted to explore the possibility of personalized medicine tailored to the host discrepancy, with purposes of achieving better treatment outcomes, higher objective response rates, and fewer irAEs. Strategies for ICIs based on individual differences are documented to be conducive to improving therapeutic outcomes for patients. Therefore, this study intended to improving the therapeutic efficacy of ICIs in AIDS/HIV patients within the context of precision immunotherapy, including monotherapy and combination strategies, as well as the application of predictive biomarkers.

随着抗逆转录病毒疗法(ART)的出现,获得性免疫缺陷综合征(艾滋病)/人类免疫缺陷病毒(艾滋病毒)患者的生存率显著提高,死亡率显著下降。尽管如此,单靠抗逆转录病毒治疗仍不能完全治愈艾滋病/艾滋病毒患者。此外,病毒在静止的CD4+T细胞中潜伏较长时间,对艾滋病/艾滋病毒患者构成持续威胁。免疫检查点阻断(Immune checkpoint blockade, ICBs)作为一种很有前景的免疫疗法,由于其能够打破HIV的潜伏期限制,促进HIV特异性T细胞的再生和活化,为艾滋病/HIV的治愈或缓解开辟了新的途径。然而,并非所有艾滋病/艾滋病毒患者都对免疫检查点抑制剂(ICIs)有反应,类似于癌症患者,在某些情况下伴有严重免疫相关不良事件(irAEs)的风险。因此,本研究旨在探讨针对宿主差异量身定制个性化医疗的可能性,以实现更好的治疗结果、更高的客观缓解率和更少的irae。基于个体差异的ICIs策略被证明有助于改善患者的治疗结果。因此,本研究旨在提高ICIs在精准免疫治疗背景下对艾滋病/HIV患者的治疗效果,包括单药治疗和联合治疗策略,以及预测性生物标志物的应用。
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引用次数: 0
Advancing hepatobiliary diagnosis and treatment using shortwave-infrared fluorescence imaging with ICG-C9. 利用ICG-C9短波红外荧光成像技术推进肝胆诊断和治疗。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-06-14 DOI: 10.5582/bst.2025.01113
Kosuke Hatta, Ryota Tanaka, Kenjiro Kimura, Naoki Yamashita, Jie Li, Terufusa Kunisada, Takeaki Ishizawa

Indocyanine green (ICG)-C9, a novel cyanine dye developed by the Center for Biosystems Dynamics Research at RIKEN, provides significant advantages over conventional ICG due to its detectability via shortwave-infrared (SWIR) fluorescence imaging. Unlike standard ICG, ICG-C9 facilitates SWIR imaging and displays therapeutic potential when conjugated with antibodies in vivo, suggesting broader applicability across various cancer types. This study evaluated the efficacy of SWIR fluorescence imaging with ICG-C9 in comparison with existing near-infrared (NIR) imaging techniques. We assessed excretion kinetics and the relationship between excitation and fluorescence wavelengths for ICG-C9 and ICG following intravenous administration in BALB/c-nu mice. Tumor uptake was evaluated using a cell-line-derived subcutaneous tumor model from HuH-7 cells, representing hepatocellular carcinoma. Variables including dose, administration route, and exposure time were optimized for comparison. Maximum fluorescence intensity for ICG-C9 was observed with an excitation wavelength of 915 nm and fluorescence emission wavelengths >950 nm within the SWIR spectrum. Both ICG-C9 and ICG followed similar excretion pathways, involving hepatic uptake and biliary excretion. Tumor uptake of ICG-C9 was confirmed under similar conditions to ICG. ICG-C9 demonstrates promising potential as an alternative to NIR fluorescence imaging with ICG, offering unique properties that may enhance imaging capabilities. However, further research is required to establish its clinical applicability and broader therapeutic utility.

吲哚菁绿(ICG)-C9是由日本理化学研究所生物系统动力学研究中心开发的一种新型花青素染料,由于其可通过短波红外(SWIR)荧光成像检测,与传统的ICG相比具有显著的优势。与标准ICG不同,ICG- c9促进了SWIR成像,并在体内与抗体结合时显示出治疗潜力,表明更广泛的适用性适用于各种癌症类型。本研究评估了ICG-C9 SWIR荧光成像与现有近红外(NIR)成像技术的疗效。我们评估了在BALB/c-nu小鼠静脉给药后ICG- c9和ICG的排泄动力学以及激发和荧光波长之间的关系。采用细胞系衍生的HuH-7细胞皮下肿瘤模型评估肿瘤摄取,HuH-7细胞代表肝细胞癌。对剂量、给药途径和暴露时间等变量进行优化比较。在SWIR光谱范围内,ICG-C9的最大荧光强度为激发波长915 nm,荧光发射波长>950 nm。ICG- c9和ICG的排泄途径相似,包括肝吸收和胆道排泄。在与ICG相似的条件下,证实了ICG- c9的肿瘤摄取。ICG- c9具有替代ICG近红外荧光成像的潜力,具有独特的性能,可以增强成像能力。然而,需要进一步的研究来确定其临床适用性和更广泛的治疗用途。
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引用次数: 0
Current status and perspectives of molecular mechanisms of gender difference in hepatocellular carcinoma: The tip of the iceberg? 肝细胞癌性别差异分子机制的现状与展望:冰山一角?
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-04-22 DOI: 10.5582/bst.2025.01103
Zhi-Quan Xu, Shi-Qiao Luo, Zhong-Jun Wu, Rui Liao

Hepatocellular carcinoma (HCC) risk factors and incidence vary globally, but men generally have higher incidence than women. Men also tend to have a worse prognosis in terms of survival period and pathological characteristics. Furthermore, there are notable gender differences in treatment strategies and drug responses. While traditional risk factors such as hepatitis B virus, hepatitis C virus, alcohol consumption, and metabolic syndrome contribute to these differences, the underlying molecular mechanisms remain partly understood. Recent research has focused on elucidating the roles of sex hormones, DNA damage and repair pathways, immune microenvironments, and genetic/epigenetic factors in driving gender-specific disparities. For instance, estrogen receptor signaling has been shown to suppress HCC progression, whereas androgen receptor signaling promotes tumor development. Additionally, immune cells such as tumor-associated macrophages and regulatory T cells exhibit gender-specific patterns, with males typically showing higher levels of immunosuppressive cells. Omics analyses, including genomics, transcriptomics, and proteomics, have further revealed sex-specific differences in gene expression, protein interactions, and metabolic pathways. Despite these advances, significant gaps remain in understanding the interplay between environmental, hormonal, and genetic factors in shaping gender disparities in HCC. Future research should prioritize the identification of novel molecular targets, the development of gender-specific therapeutic strategies, and the integration of multi-omics data to address these disparities. Addressing these challenges will be critical for improving diagnostic, prognostic, and therapeutic outcomes in HCC patients of both sexes.

肝细胞癌(HCC)的危险因素和发病率在全球各不相同,但男性的发病率普遍高于女性。男性在生存期和病理特征方面也往往预后较差。此外,在治疗策略和药物反应方面存在显著的性别差异。虽然传统的危险因素,如乙型肝炎病毒、丙型肝炎病毒、饮酒和代谢综合征造成了这些差异,但潜在的分子机制仍部分被了解。最近的研究集中在阐明性激素、DNA损伤和修复途径、免疫微环境和遗传/表观遗传因素在驱动性别差异中的作用。例如,雌激素受体信号传导抑制HCC进展,而雄激素受体信号传导促进肿瘤发展。此外,免疫细胞如肿瘤相关巨噬细胞和调节性T细胞表现出性别特异性模式,男性通常表现出更高水平的免疫抑制细胞。组学分析,包括基因组学、转录组学和蛋白质组学,进一步揭示了基因表达、蛋白质相互作用和代谢途径的性别特异性差异。尽管取得了这些进展,但在HCC中形成性别差异的环境、激素和遗传因素之间的相互作用的理解上仍存在重大差距。未来的研究应优先确定新的分子靶点,发展针对性别的治疗策略,并整合多组学数据来解决这些差异。解决这些挑战对于改善男女HCC患者的诊断、预后和治疗结果至关重要。
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引用次数: 0
Promoting active health with AI technologies: Current status and prospects of high-altitude therapy, simulated hypoxia, and LLM-driven lifestyle rehabilitation approaches. 用人工智能技术促进积极健康:高原治疗、模拟缺氧和llm驱动的生活方式康复方法的现状和前景
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-04-29 DOI: 10.5582/bst.2025.01105
Mingyu Liu, Wenli Zhang, Junyu Wang, Kehan Bao, Ziyi Fu, Boyuan Wang

In the context of the rising global prevalence of obesity, traditional intervention measures have proven insufficient to meet the demands of personalized and sustainable health management, necessitating the exploration of innovative solutions through innovative technologies. This study explores how advanced digital technologies, including Internet of Things (IoT) and Artificial Intelligence (AI), can manage weight and enhance full-lifecycle health in individuals with obesity under simulated high-altitude hypoxic conditions (HC). The findings suggest that integrating simulated HC with digital health technologies offers a novel and safe approach to obesity rehabilitation. By leveraging environmental stimuli, real-time monitoring through wearable devices, and intelligent evaluation using large language models (LLMs), this method enables more scientific weight loss, prevents rebound weight gain, and fosters proactive healthy lifestyles, significantly improving weight control outcomes for individuals with obesity. Future research should evaluate the efficacy of simulated HC in weight management and its long-term impact on obesity control. Establishing an integrated framework that combines simulated HC, lifestyle interventions, and smart health ecosystems is crucial for advancing rehabilitative healthcare and addressing the global burden of obesity through digital innovation.

在全球肥胖患病率不断上升的背景下,传统的干预措施已不足以满足个性化和可持续健康管理的需求,需要通过创新技术探索创新解决方案。本研究探讨了包括物联网(IoT)和人工智能(AI)在内的先进数字技术如何在模拟高海拔缺氧条件(HC)下管理体重并增强肥胖个体的全生命周期健康。研究结果表明,将模拟HC与数字健康技术相结合,为肥胖康复提供了一种新颖而安全的方法。该方法通过利用环境刺激、可穿戴设备实时监测和大型语言模型智能评估,实现更科学的减肥,防止反弹性体重增加,培养积极的健康生活方式,显著改善肥胖个体的体重控制结果。未来的研究应评估模拟HC在体重管理中的功效及其对肥胖控制的长期影响。建立一个结合模拟HC、生活方式干预和智能健康生态系统的综合框架,对于推进康复医疗和通过数字创新解决全球肥胖负担至关重要。
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引用次数: 0
Traditional Chinese medicine modulates hypothalamic neuropeptides for appetite regulation: A comprehensive review. 中药调节下丘脑神经肽对食欲的调节:综述。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-07-04 Epub Date: 2025-06-15 DOI: 10.5582/bst.2025.01087
Yuqi Wang, Fanghua Qi, Min Li, Yuan Xu, Li Dong, Pingping Cai

Obesity has emerged as a global health crisis, imposing substantial burdens on both individual well-being and socioeconomic development. The pathogenesis of obesity primarily stems from disrupted energy homeostasis, wherein the hypothalamus plays a pivotal role through its complex neuropeptide networks that regulate appetite and energy balance. Recent advances have highlighted the therapeutic potential of traditional Chinese medicine (TCM) in modulating hypothalamic appetite regulation. This comprehensive review systematically evaluates current evidence from PubMed and China National Knowledge Infrastructure databases, focusing on the mechanisms by which TCM interventions influence hypothalamic neuropeptide signaling pathways. Our analysis reveals that various TCM modalities, including bioactive compounds (e.g., berberine and, evodiamine), herbal formulations (e.g., Pingwei Powder, Fangji Huangqi Decoction), plant extracts (e.g., Cyclocarya paliurus aqueous extract), and Chinese patent medicines (e.g., Danzhi Jiangtang Capsules and Jingui Shenqi Pills), have significant effects on key appetite-regulating pathways. These effects are mediated through modulation of critical neuropeptide systems, particularly AgRP/NPY and POMC/CART neurons, as well as leptin signaling. These findings not only provide mechanistic insights into TCM's anti-obesity effects but also demonstrate the value of integrating traditional medicine with modern pharmacological approaches. The synergistic potential of TCM formulas, when combined with contemporary research methodologies, offers promising avenues for developing novel therapeutic strategies for obesity and related metabolic disorders.

肥胖已成为全球健康危机,给个人福祉和社会经济发展带来沉重负担。肥胖的发病机制主要源于能量稳态的破坏,其中下丘脑通过其复杂的神经肽网络发挥关键作用,调节食欲和能量平衡。近年来的研究进展强调了中药在调节下丘脑食欲方面的治疗潜力。本综述系统评估了PubMed和中国国家知识基础设施数据库的现有证据,重点关注中医药干预影响下丘脑神经肽信号通路的机制。我们的分析显示,各种中药剂型,包括生物活性化合物(如小檗碱和evodiamine)、草药制剂(如平胃散、方鸡黄芪汤)、植物提取物(如环己烷水提物)和中成药(如丹栀降糖胶囊和金桂参芪丸),对关键的食欲调节途径都有显著影响。这些作用是通过调节关键神经肽系统介导的,特别是AgRP/NPY和POMC/CART神经元,以及瘦素信号传导。这些发现不仅提供了中医抗肥胖作用的机制见解,而且证明了传统医学与现代药理学方法相结合的价值。中药方剂的协同潜力,与当代研究方法相结合,为开发肥胖症和相关代谢紊乱的新治疗策略提供了有希望的途径。
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引用次数: 0
Advances in research on receptor heterogeneity in breast cancer liver metastasis. 乳腺癌肝转移受体异质性的研究进展。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-05-09 Epub Date: 2025-04-15 DOI: 10.5582/bst.2025.01046
Qinyu Liu, Runze Huang, Xin Jin, Xuanci Bai, Wei Tang, Lu Wang, Kenji Karako, Weiping Zhu

Breast cancer liver metastasis (BCLM) presents a critical challenge in breast cancer treatment and has substantial epidemiological and clinical significance. Receptor status is pivotal in managing both primary breast cancer and its liver metastases. Moreover, shifts in these statuses can have a profound impact on patient treatment strategies and prognoses. Research has indicated that there is significant heterogeneity in receptor status between primary breast cancer and liver metastases. This variation may be influenced by a multitude of factors, such as therapeutic pressure, inherent tumor heterogeneity, clonal evolution, and the unique microenvironment of the liver. Changes in the receptor status of BCLM are crucial for adjusting treatment strategies, and liver biopsy plays an important role in the treatment process. Directions for future research targeting changes in receptor status include in-depth study of molecular mechanisms, combined treatment strategies for receptor status reversal, development of artificial intelligence deep learning models to predict receptor status in liver metastases, and clinical research on new drug development and combination therapies. That research will provide more precise treatment strategies for patients with BCLM and improve their prognosis.

乳腺癌肝转移(Breast cancer liver metastasis, BCLM)是乳腺癌治疗的一个重要挑战,具有重要的流行病学和临床意义。受体状态在原发性乳腺癌及其肝转移的治疗中起关键作用。此外,这些状态的变化会对患者的治疗策略和预后产生深远的影响。研究表明,原发性乳腺癌和肝转移性乳腺癌的受体状态存在显著的异质性。这种变异可能受到多种因素的影响,如治疗压力、固有的肿瘤异质性、克隆进化和肝脏独特的微环境。BCLM受体状态的变化对调整治疗策略至关重要,肝活检在治疗过程中起着重要作用。未来针对受体状态变化的研究方向包括深入研究分子机制、受体状态逆转的联合治疗策略、开发人工智能深度学习模型预测肝转移中受体状态、新药开发和联合治疗的临床研究等。该研究将为BCLM患者提供更精确的治疗策略并改善其预后。
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引用次数: 0
Exosomes derived from olfactory mucosa mesenchymal stem cells attenuate cognitive impairment in a mouse model of Alzheimer's disease. 来自嗅觉粘膜间充质干细胞的外泌体减轻阿尔茨海默病小鼠模型的认知障碍。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-05-09 Epub Date: 2025-03-18 DOI: 10.5582/bst.2025.01065
Xiqi Hu, Ya-Nan Ma, Jun Peng, Zijie Wang, Yuchang Liang, Ying Xia

Alzheimer's disease (AD) is a progressive neurodegenerative disorder characterized by cognitive decline, neuroinflammation, and endoplasmic reticulum (ER) stress. In recent years, exosomes have garnered significant attention as a potential therapeutic tool for neurodegenerative diseases. This study, for the first time, investigates the neuroprotective effects of exosomes derived from olfactory mucosa mesenchymal stem cells (OM-MSCs-Exos) in AD and further explore the potential role of low-density lipoprotein receptor-related protein 1 (LRP1) in this process. Using an Aβ1-42-induced AD mouse model, we observed that OM-MSCs-Exos significantly improved cognitive function in behavioral tests, reduced neuroinflammatory responses, alleviated ER stress, and decreased neuronal apoptosis. Further analysis revealed that OM-MSCs-Exos exert neuroprotective effects by modulating the activation of microglia and astrocytes and influencing the ER stress response, a process that may involve LRP1. Although these findings support the potential neuroprotective effects of OM-MSCs-Exos, further studies are required to explore their long-term stability, dose dependency, and immunogenicity to assess their feasibility for clinical applications.

阿尔茨海默病(AD)是一种以认知能力下降、神经炎症和内质网应激为特征的进行性神经退行性疾病。近年来,外泌体作为神经退行性疾病的潜在治疗工具引起了极大的关注。本研究首次探讨了嗅粘膜间充质干细胞外泌体(OM-MSCs-Exos)在AD中的神经保护作用,并进一步探讨了低密度脂蛋白受体相关蛋白1 (LRP1)在这一过程中的潜在作用。通过a β1-42诱导的AD小鼠模型,我们观察到om - msc - exos显著改善行为测试中的认知功能,减少神经炎症反应,减轻内质网应激,减少神经元凋亡。进一步分析表明,om - msc - exos通过调节小胶质细胞和星形胶质细胞的激活并影响内质网应激反应来发挥神经保护作用,这一过程可能与LRP1有关。尽管这些发现支持om - msc - exos潜在的神经保护作用,但仍需进一步研究其长期稳定性、剂量依赖性和免疫原性,以评估其临床应用的可行性。
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引用次数: 0
Comparative analysis of human gut bacterial microbiota between shallow shotgun metagenomic sequencing and full-length 16S rDNA amplicon sequencing. 浅层霰弹枪宏基因组测序与16S rDNA全长扩增子测序对人肠道菌群的比较分析。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-05-09 Epub Date: 2025-04-04 DOI: 10.5582/bst.2024.01393
Suwalak Chitcharoen, Vorthon Sawaswong, Pavit Klomkliew, Prangwalai Chanchaem, Sunchai Payungporn

The human gut microbiome is increasingly recognized as important to health and disease, influencing immune function, metabolism, mental health, and chronic illnesses. Two widely used, cost-effective, and fast approaches for analyzing gut microbial communities are shallow shotgun metagenomic sequencing (SSMS) and full-length 16S rDNA sequencing. This study compares these methods across 43 stool samples, revealing notable differences in taxonomic and species-level detection. At the genus level, Bacteroides was most abundant in both methods, with Faecalibacterium showing similar trends but Prevotella was more abundant in full-length 16S rDNA. Genera such as Alistipes and Akkermansia were more frequently detected by full-length 16S rDNA, whereas Eubacterium and Roseburia were more prevalent in SSMS. At the species level, Faecalibacterium prausnitzii, a key indicator of gut health, was abundant across both datasets, while Bacteroides vulgatus was more frequently detected by SSMS. Species within Parabacteroides and Bacteroides were primarily detected by 16S rDNA, contrasting with higher SSMS detection of Prevotella copri and Oscillibacter valericigenes. LEfSe analysis identified 18 species (9 species in each method) with significantly different detection between methods, underscoring the impact of methodological choice on microbial diversity and abundance. Differences in classification databases, such as Ribosomal Database Project (RDP) for 16S rDNA and Kraken2 for SSMS, further highlight the influence of database selection on outcomes. These findings emphasize the importance of carefully selecting sequencing methods and bioinformatics tools in microbiome research, as each approach demonstrates unique strengths and limitations in capturing microbial diversity and relative abundances.

人类肠道微生物群对健康和疾病越来越重要,影响免疫功能、代谢、心理健康和慢性疾病。浅层散弹枪宏基因组测序(SSMS)和全长16S rDNA测序是两种广泛使用、经济高效且快速的肠道微生物群落分析方法。这项研究比较了43个粪便样本的这些方法,揭示了分类和物种水平检测的显着差异。在属水平上,两种方法中拟杆菌属(Bacteroides)的丰度最高,Faecalibacterium的趋势相似,但普雷沃特菌(Prevotella)在全长16S rDNA中丰度更高。全长16S rDNA检测到Alistipes和Akkermansia属较多,而Eubacterium和Roseburia属在SSMS中较多。在物种水平上,Faecalibacterium prausnitzii(肠道健康的关键指标)在两个数据集中都很丰富,而Bacteroides vulgatus在SSMS中检测到的频率更高。拟杆菌门和拟杆菌门中主要采用16S rDNA检测,而copri Prevotella和valericigenes Oscillibacter的SSMS检出率较高。LEfSe分析共鉴定出18种(每种方法9种),不同方法之间的检测结果差异显著,说明方法选择对微生物多样性和丰度的影响。分类数据库的差异,如16S rDNA的核糖体数据库项目(RDP)和SSMS的Kraken2,进一步突出了数据库选择对结果的影响。这些发现强调了在微生物组研究中仔细选择测序方法和生物信息学工具的重要性,因为每种方法在捕获微生物多样性和相对丰度方面都表现出独特的优势和局限性。
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引用次数: 0
Artificial intelligence in colorectal cancer liver metastases: From classification to precision medicine. 人工智能在大肠癌肝转移中的应用:从分类到精准医学。
IF 5.7 4区 生物学 Q1 BIOLOGY Pub Date : 2025-05-09 Epub Date: 2025-04-15 DOI: 10.5582/bst.2025.01045
Runze Huang, Xin Jin, Qinyu Liu, Xuanci Bai, Kenji Karako, Wei Tang, Lu Wang, Weiping Zhu

Colorectal cancer liver metastasis (CRLM) remains the leading cause of mortality among colorectal cancer (CRC) patients, with more than half eventually developing hepatic metastases. Achieving long-term survival in CRLM necessitates early detection, robust stratification, and precision treatment tailored to individual classifications. These processes encompass critical aspects such as tumor staging, predictive modeling of therapeutic responses, and risk stratification for survival outcomes. The rapid evolution of artificial intelligence (AI) has ushered in unprecedented opportunities to address these challenges, offering transformative potential for clinical oncology. This review summarizes the current methodologies for CRLM grading and classification, alongside a detailed discussion of the machine learning models commonly used in oncology and AI-driven applications. It also highlights recent advances in using AI to refine CRLM subtyping and precision medicine approaches, underscoring the indispensable role of interdisciplinary collaboration between clinical oncology and the computational sciences in driving innovation and improving patient outcomes in metastatic colorectal cancer.

结直肠癌肝转移(CRLM)仍然是结直肠癌(CRC)患者死亡的主要原因,超过一半的患者最终发展为肝转移。为了实现CRLM的长期生存,需要早期发现、稳健的分层和针对个体分类的精确治疗。这些过程包括肿瘤分期、治疗反应的预测模型和生存结果的风险分层等关键方面。人工智能(AI)的快速发展为应对这些挑战带来了前所未有的机遇,为临床肿瘤学提供了变革潜力。本文总结了目前CRLM分级和分类的方法,并详细讨论了肿瘤学和人工智能驱动应用中常用的机器学习模型。它还强调了利用人工智能改进CRLM亚型和精准医学方法的最新进展,强调了临床肿瘤学和计算科学之间的跨学科合作在推动创新和改善转移性结直肠癌患者预后方面的不可或缺的作用。
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Bioscience trends
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