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Network Pharmacology and Experimental Validation Reveal Aidi Injection Suppresses Prostate Cancer via EGFR Inhibition and STAT3-Mediated Apoptosis. 网络药理学和实验验证表明爱地注射液通过抑制EGFR和stat3介导的细胞凋亡抑制前列腺癌。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-22 DOI: 10.1186/s12575-025-00299-w
Ganhua You, Chen Qian, Xiaoyue Chen, Qunying An, Jukun Song, Yuehai Xiao

Background: Prostate cancer (PCa) is the most common male reproductive malignancy, with traditional Chinese medicine (TCM) offering potential complementary treatments. Aidi injection, used for liver, lung, and colorectal cancers, shows promise for PCa, but its mechanisms are unclear. This study aims to uncover the molecular pathways through which Aidi injection affects PCa using network pharmacology and experiments.

Methods: The study used network pharmacology to identify active components of Aidi injection and their targets from various databases. These targets were cross-referenced with PCa-related targets to uncover therapeutic possibilities. Protein-protein interaction (PPI) and KEGG pathway analyses highlighted key molecular pathways affected by Aidi injection. Molecular docking examined ingredient-target binding. In vitro tests evaluated effects on PCa cell proliferation, apoptosis, and IL-6/STAT3 signaling, while in vivo studies assessed tumor growth and immune response in mice.

Results: The study identified 58 active components and 804 PCa-related target genes, with 49 overlapping therapeutic targets. Key compounds such as quercetin, kaempferol, isorhamnetin, and cantharidin were highlighted. Core targets included ESR1, IL-6, STAT3, HSP90AA1, EGFR, and VEGFA. KEGG analysis revealed the IL-6/STAT3 and EGFR pathways as significant in PCa treatment. In vitro, Aidi injection inhibited PCa cell proliferation, induced apoptosis, and suppressed IL-6/STAT3 activation. In vivo, Aidi injection reduced tumor growth and enhanced immune response in mice.

Conclusions: Aidi injection influences the IL-6/STAT3 and EGFR pathways, suppressing PCa cell growth, inducing apoptosis, and reducing migration and invasion. These findings offer valuable insights into the therapeutic potential of Aidi injection for prostate cancer.

背景:前列腺癌(PCa)是最常见的男性生殖恶性肿瘤,中医提供了潜在的辅助治疗方法。用于肝癌、肺癌和结直肠癌的爱地注射液显示出治疗前列腺癌的希望,但其机制尚不清楚。本研究旨在通过网络药理学和实验揭示爱地注射液影响PCa的分子途径。方法:采用网络药理学方法,从各种数据库中对爱地注射液的有效成分及其靶点进行鉴定。这些靶点与pca相关靶点交叉对照,以发现治疗可能性。蛋白-蛋白相互作用(PPI)和KEGG通路分析突出了Aidi注射液影响的关键分子通路。分子对接检测成分-靶标结合。体外试验评估了对前列腺癌细胞增殖、凋亡和IL-6/STAT3信号传导的影响,而体内研究评估了小鼠的肿瘤生长和免疫反应。结果:共鉴定出58个有效成分和804个pca相关靶基因,49个治疗靶点重叠。重点指出了槲皮素、山奈酚、异鼠李素和斑蝥素等关键化合物。核心靶点包括ESR1、IL-6、STAT3、HSP90AA1、EGFR和VEGFA。KEGG分析显示IL-6/STAT3和EGFR通路在PCa治疗中具有重要意义。体外,爱地注射液抑制PCa细胞增殖,诱导凋亡,抑制IL-6/STAT3活化。在体内,爱地注射液可抑制小鼠肿瘤生长,增强免疫应答。结论:爱地注射液影响IL-6/STAT3和EGFR通路,抑制PCa细胞生长,诱导凋亡,减少迁移和侵袭。这些发现为爱地注射液治疗前列腺癌的潜力提供了有价值的见解。
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引用次数: 0
HCAR2 Orchestrates an Immunosuppressive Niche and Determines Checkpoint Inhibitor Responsiveness in Esophageal Squamous Cell Carcinoma. HCAR2在食管鳞状细胞癌中协调免疫抑制小生境并决定检查点抑制剂的反应性。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-19 DOI: 10.1186/s12575-025-00305-1
Zekun Li, Guangcong Shen, Xiaoqing Ma, Chenyang Meng, Diliyaer Abudukeremu, Rui Zhao, Zuoyu Chen, Qiang Song, Xiaofan Guo, Tianxing Zhou, Chao Xu, Bo Ni, Yueying Shan, Boyang Fu, Yiheng Chen, Zhansheng Jiang, Yongjie Xie, Kaiyuan Wang, Liangliang Wu, Xiuchao Wang
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引用次数: 0
Arsenic Sulfide Induces Apoptosis in Myelodysplastic Neoplasm Cells Through the Suppression of ABI2. 硫化砷通过抑制ABI2诱导骨髓增生异常肿瘤细胞凋亡
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-09 DOI: 10.1186/s12575-025-00311-3
Yuchen Tao, Ning Ding, Runfeng Ni, Shuyang Cai, Rui Jin, Yirong Chen, Jianye Ren, Hao Xu, Qian Ba, Jiahui Lu

Background: Myelodysplastic neoplasms (MDS) are a category of myeloid malignancies that can progress to acute myeloid leukemia (AML). Arsenic sulfide (As₂S₂) has demonstrated efficacy in the treatment of MDS. However, further investigation is required to elucidate its specific therapeutic targets.

Objective: To examine the influence of ABI2 on MDS and clarify the regulatory role of As₂S₂ on ABI2 within the therapeutic framework of MDS.

Methods: To explore ABI2's role in the expression and prognosis of patients with hematological malignancies, RNA interference was used to reduce ABI2 expression in SKM-1, K562 and MDS-L cell lines. The therapeutic efficacy of As₂S₂ and its regulatory impact on ABI2 were evaluated both in vitro and in vivo.

Results: ABI2 was found to be overexpressed in the peripheral blood of patients with MDS and AML, which was significantly associated with decreased survival rates in AML patients. Inhibition of ABI2 decreased the proliferation and increased the apoptosis of SKM-1, K562 and MDS-L cells. As₂S₂ also inhibited cell proliferation and induced apoptosis in these cells, but its efficacy diminished significantly with ABI2 silencing. Additionally, As₂S₂ showed therapeutic benefits in NHD13 mice by downregulating bone marrow ABI2 expression.

Conclusion: The collective findings suggest that ABI2 is significantly overexpressed in MDS and AML, and its expression was correlated with unfavorable prognostic outcomes. Furthermore, As₂S₂ demonstrates therapeutic efficacy in MDS by modulating the expression levels of ABI2.

背景:骨髓增生异常肿瘤(MDS)是一类髓系恶性肿瘤,可发展为急性髓系白血病(AML)。硫化砷(As₂S₂)已被证明对MDS有疗效。然而,其具体的治疗靶点还有待进一步研究。目的:探讨ABI2对MDS的影响,阐明As₂S₂在MDS治疗框架下对ABI2的调控作用。方法:采用RNA干扰法降低SKM-1、K562和MDS-L细胞系中ABI2的表达,探讨ABI2在血液恶性肿瘤患者的表达及预后中的作用。在体外和体内评估As₂S₂的治疗效果及其对ABI2的调节作用。结果:ABI2在MDS合并AML患者外周血中过表达,与AML患者生存率降低显著相关。抑制ABI2可降低SKM-1、K562和MDS-L细胞的增殖,增加细胞凋亡。在这些细胞中,As₂S₂也能抑制细胞增殖并诱导细胞凋亡,但随着ABI2的沉默,其作用显著减弱。此外,As₂S₂通过下调骨髓ABI2表达在NHD13小鼠中显示出治疗益处。结论:综合研究结果提示,ABI2在MDS和AML中显著过表达,且其表达与不良预后相关。此外,As₂S₂通过调节ABI2的表达水平在MDS中显示出治疗效果。
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引用次数: 0
Listening to the Past, Shaping the Future: A Data-mining Based and Visual Analysis of Five Decades of Gastric Carcinogenesis Research. 聆听过去,塑造未来:五十年胃癌发生研究的数据挖掘和可视化分析。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-08 DOI: 10.1186/s12575-025-00316-y
Tai Zhang, Xudong Tang

Background: Gastric cancer remains a major global health concern with approximately one million new cases annually. Despite five decades of extensive research, comprehensive analysis mapping gastric carcinogenesis research evolution and emerging therapeutic frontiers remains limited. This study aims to systematically analyze the intellectual landscape, research trends, and future directions in gastric carcinogenesis research.

Materials and methods: We analyzed 11,527 scientific publications on gastric carcinogenesis from 1970-2024 using advanced scientometric tools including CiteSpace and VOSviewer for co-citation analysis, collaboration network mapping, and keyword co-occurrence analysis.

Results: Publication output demonstrated exponential growth, peaking at 547 publications in 2022. Asia leads research productivity with China, Japan, and South Korea contributing 37.50% of total publications, while the United States exhibits highest collaborative influence with betweenness centrality of 0.45. Seven distinct research clusters emerged encompassing Helicobacter pylori pathogenesis, molecular mechanisms, precancerous lesions, autoimmune gastritis, and therapeutic interventions. Five emerging trends were identified: stromal microenvironment interactions in carcinogenesis progression, gastric organoid models for disease modeling, artificial intelligence-enhanced endoscopic detection technologies, biomarker development for early diagnosis, and traditional herbal medicine applications for chemoprevention.

Conclusions: Research gaps persist in autoimmune gastritis pathways and clinical translation of molecular discoveries. Emerging research directions encompass advanced modeling systems, molecular diagnostics, and technological applications, though their clinical impact remains to be established through future validation studies.

背景:胃癌仍然是一个主要的全球健康问题,每年约有100万新病例。尽管经过50年的广泛研究,综合分析胃癌发生的研究进展和新兴的治疗前沿仍然有限。本研究旨在系统分析胃癌发生研究的知识格局、研究趋势和未来发展方向。材料和方法:利用CiteSpace和VOSviewer等先进的科学计量工具,对1970-2024年间11527篇关于胃癌发生的科学出版物进行共被引分析、协作网络制图和关键词共现分析。结果:出版物产量呈指数增长,2022年达到峰值547篇。亚洲的研究生产力处于领先地位,中国、日本和韩国贡献了37.50%的总出版物,而美国的合作影响力最高,中间中心性为0.45。七个不同的研究集群出现,包括幽门螺杆菌的发病机制、分子机制、癌前病变、自身免疫性胃炎和治疗干预。确定了五个新兴趋势:间质微环境在癌变进展中的相互作用,用于疾病建模的胃类器官模型,人工智能增强的内窥镜检测技术,用于早期诊断的生物标志物开发,以及用于化学预防的传统草药应用。结论:自身免疫性胃炎途径和分子发现的临床转化研究仍存在空白。新兴的研究方向包括先进的建模系统、分子诊断和技术应用,尽管它们的临床影响仍需通过未来的验证研究来确定。
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引用次数: 0
(-)-Guaiol Downregulates M2 Tumor-Associated Macrophage Polarization Through PPAR-γ Signaling to Suppress Lung Cancer. (-)-愈创酚通过PPAR-γ信号下调M2肿瘤相关巨噬细胞极化抑制肺癌
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-05 DOI: 10.1186/s12575-025-00312-2
Zhen-Yu Zhao, Jian-Chun Wu, Ying-Bin Luo, Yu-Li Wang, Xi Wang, Jian-Hui Tian, Bo Zhang, Yan Li
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引用次数: 0
A Novel Strategy for Enhancing Lung Cancer Immunotherapy Efficacy: Traditional Chinese Medicine Formula Shuyu Pills Enhances Anti-PD-1 Efficacy Via the "GM-ERS-Immunity" Axis. 提高肺癌免疫治疗疗效的新策略:中药复方舒愈丸通过“gm - ers -免疫”轴增强抗pd -1疗效。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-03 DOI: 10.1186/s12575-025-00314-0
Sheng Chen, Jing Wen, Zhengyi Liu, Yuxiang Hu, Chenhong Zhu, Xiao Yang, Zhi Wen, Cai Tan, Yaoyao Li, Anqi Xiao, Shuying You, Tonglin Sun, Hua Liu, Yinhui Sun, Lihuai Wang
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引用次数: 0
Clinical Retrospective Study on the Role of Spleen-Invigorating and Qi-Supporting Therapy in Non-Small Cell Lung Cancer Immunotherapy and Construction of Survival Prediction Model. 健脾益气疗法在非小细胞肺癌免疫治疗中的临床回顾性研究及生存预测模型的构建。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-02 DOI: 10.1186/s12575-025-00310-4
Ziyi Chen, Jiangnan Huang, Chun Shen, Yaoyao Li, Zhi Wen, Yinhui Sun, Hua Liu, Lihuai Wang

Objective: This study aims to evaluate the clinical efficacy of combining spleen‑nourishing and qi‑tonifying therapy with programmed cell death protein 1 (PD‑1)/programmed death‑ligand 1 (PD‑L1) inhibitors in patients with stage IIIB-IV non‑small cell lung cancer (NSCLC), and to develop a survival prediction model based on progression‑free survival (PFS) and overall survival (OS).

Methods: A retrospective cohort of 246 patients with stage IIIB-IV NSCLC receiving immunotherapy at the Tumor Medicine Center of the First Hospital of Hunan University of Chinese Medicine from September 2019 to October 2024 is assembled. Patients are categorized into a traditional Chinese medicine (TCM) group (n = 174) or a control group (n = 72) according to use of TCM decoctions. Baseline clinical and pathological characteristics and treatment data are collected. Cox proportional hazards regression is used to analyze survival‑related factors. Kaplan-Meier curves and log‑rank tests are used to compare survival. Logistic regression is used to identify factors associated with the objective response rate (ORR). Survival prediction models based on PFS and OS are constructed and validated.

Results: Median PFS is 5.9 months in the TCM group versus 2.9 months in the control group (P < 0.001), and median OS is 22.3 versus 14.8 months (P < 0.001). On multivariable analysis, TCM intervention, PD‑L1 expression, alkaline phosphatase (ALP), lactate dehydrogenase (LDH), and cytokeratin fragment 21‑1 (CYFRA21‑1) are independent predictors of PFS; TCM intervention, brain metastasis, and carcinoembryonic antigen (CEA) independently influence OS. The 6‑month PFS rate, 1‑year PFS rate, and 1‑year OS rate are significantly higher in the TCM combination group than in controls (P < 0.05). TCM intervention and sex are independent predictors of ORR (P < 0.05). Model validation shows areas under the curve (AUCs) of 0.705 (PFS) and 0.636 (OS) in the prediction-model group, and 0.879 (PFS) and 0.765 (OS) for internal validation.

Conclusion: The addition of TCM to PD‑1/PD‑L1 inhibitors prolongs PFS and OS in patients with stage IIIB-IV NSCLC. A survival prediction model based on routine clinical characteristics demonstrates predictive utility, offering a potential tool to inform clinical decision‑making.

目的:本研究旨在评价益脾益气联合程序性细胞死亡蛋白1 (PD - 1)/程序性死亡配体1 (PD - L1)抑制剂治疗IIIB-IV期非小细胞肺癌(NSCLC)患者的临床疗效,建立基于无进展生存期(PFS)和总生存期(OS)的生存预测模型。方法:回顾性分析2019年9月至2024年10月在湖南中医药大学第一医院肿瘤医学中心接受免疫治疗的IIIB-IV期非小细胞肺癌患者246例。根据中药煎剂的使用情况将患者分为中药组(174例)和对照组(72例)。收集基线临床和病理特征及治疗数据。采用Cox比例风险回归分析生存相关因素。Kaplan-Meier曲线和log - rank检验用于比较生存率。采用Logistic回归方法确定与客观有效率(ORR)相关的因素。构建并验证了基于PFS和OS的生存预测模型。结果:中药组的中位PFS为5.9个月,对照组为2.9个月(P结论:中药联合PD‑1/PD‑L1抑制剂可延长IIIB-IV期NSCLC患者的PFS和OS。基于常规临床特征的生存预测模型展示了预测效用,为临床决策提供了潜在的工具。
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引用次数: 0
Integrating of Machine Learning to Characterize Tumor-Infiltrating Immune Cell-Related Signature for Enhancing Prognosis for Glioma Patients. 整合机器学习表征肿瘤浸润免疫细胞相关特征以提高胶质瘤患者预后。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-12-01 DOI: 10.1186/s12575-025-00308-y
Chen Yang, JieFei Ma, RanZe Cai, Hong Gao, Fan Hu, QiuPing Li
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引用次数: 0
Commentary on: Isolation and Quantification of Blood Apoptotic Bodies, a Non-invasive Tool to Evaluate Apoptosis in Patients with Ischemic Stroke and Neurodegenerative Diseases. 血凋亡小体的分离和定量——一种评估缺血性卒中和神经退行性疾病患者细胞凋亡的无创工具
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-28 DOI: 10.1186/s12575-025-00315-z
Ehsan Soleymaninejadian

Background: Membrane-bound vesicles called apoptotic bodies (ApoBDs) formed during apoptosis are being recognized as non-invasive biomarkers for neurological diseases like dementia and ischemic stroke. Centrifugation-based isolation of these vesicles from blood was suggested in a recent paper by Serrano-Heras et al. (2020), which asserted their use for clinical diagnosis. This initial study provides a foundational methodology for ApoBD diagnostics. Albeit, centrifugation parameters employed present technical challenges that require optimization to ensure the purity and reproducibility of ApoBD preparations for clinical utility.

Results: Due to the use of improper centrifugation speeds (160×g and 700×g) not consistent with accepted norms for the separation of platelets (ideally 2,000-5,000×g), running the risk of being seriously contaminated by platelets and platelet-derived EVs (P-EVs), which make up 70-90% of EVs in circulation. Such contamination can render functional studies problematic, cloud proteomic and size-distribution analysis, and lower the specificity of ApoBDs enumeration on the basis of Annexin V/PI labeling. Even more extreme centrifugation has little chance to eliminate platelets completely, according to comparative literature data. Increased centrifugal pressure, density gradient separation, size-exclusion chromatography (SEC), and confirmation with platelet-specific markers are among some procedural changes recommended to improve sample purity in attempts to solve such problems.

Conclusions: Even as the Serrano-Heras et al. study pinpoints the potential of ApoBDs as biomarkers, constraints to the procedure under consideration pose the threat of bias in future studies. Proper isolation of ApoBDs requires multimodal confirmation, optimized platelet removal protocols and clinically feasible methods like SEC are essential to enhance ApoBDs isolation for neurological disease diagnostics. Rectification of such issues enhance significantly the practicality of ApoBDs in clinical practice for the detection of neurological illnesses.

背景:细胞凋亡过程中形成的被称为凋亡小体(ApoBDs)的膜结合囊泡被认为是痴呆和缺血性中风等神经系统疾病的非侵入性生物标志物。Serrano-Heras等人(2020)在最近的一篇论文中建议从血液中以离心为基础分离这些囊泡,并断言它们可用于临床诊断。这项初步研究为ApoBD诊断提供了基础方法。尽管如此,采用的离心参数存在技术挑战,需要优化以确保临床应用的ApoBD制剂的纯度和可重复性。结果:由于使用不合适的离心速度(160×g和700×g),不符合公认的血小板分离规范(理想情况下为2,000-5,000×g),存在被血小板和血小板源性ev (p - ev)严重污染的风险,p - ev占流通ev的70-90%。这种污染会给功能研究带来问题,影响蛋白质组学和大小分布分析,并降低基于Annexin V/PI标记的apobd枚举的特异性。根据比较文献数据,即使是更极端的离心也几乎没有机会完全消除血小板。提高离心压力、密度梯度分离、粒径排除层析(SEC)和血小板特异性标记物的确认是建议的一些程序变化,以提高样品纯度,试图解决这些问题。结论:尽管Serrano-Heras等人的研究指出了载脂蛋白激酶作为生物标志物的潜力,但考虑中的程序限制可能会在未来的研究中产生偏见。适当的apobd分离需要多模式确认,优化的血小板去除方案和临床可行的方法(如SEC)对于提高apobd分离用于神经疾病诊断至关重要。这些问题的纠正大大提高了apobd在临床实践中检测神经系统疾病的实用性。
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引用次数: 0
CAR T cell therapy in type 1 diabetes: what we know and what remains to be explored. CAR - T细胞治疗1型糖尿病:我们知道什么,还有什么有待探索。
IF 4.3 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-11-28 DOI: 10.1186/s12575-025-00307-z
Sandesh Kumar Pattanaik, Diptirani Rath, Amir Mansour Moeini, Mohsen Nabi Afjadi
{"title":"CAR T cell therapy in type 1 diabetes: what we know and what remains to be explored.","authors":"Sandesh Kumar Pattanaik, Diptirani Rath, Amir Mansour Moeini, Mohsen Nabi Afjadi","doi":"10.1186/s12575-025-00307-z","DOIUrl":"10.1186/s12575-025-00307-z","url":null,"abstract":"","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"27 1","pages":"45"},"PeriodicalIF":4.3,"publicationDate":"2025-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12661798/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145629019","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Biological Procedures Online
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