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Development of a Large-Scale Pathogen Screening Test for the Biosafety Evaluation of Canine Mesenchymal Stem Cells 开发用于犬间质干细胞生物安全性评估的大规模病原体筛选试验
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-12-14 DOI: 10.1186/s12575-023-00226-x
Emese Pekker, Katalin Priskin, Éva Szabó-Kriston, Bernadett Csányi, Orsolya Buzás-Bereczki, Lili Adorján, Valéria Szukacsov, Lajos Pintér, Miklós Rusvai, Paul Cooper, Endre Kiss-Tóth, Lajos Haracska
The action of mesenchymal stem cells (MSCs) is the subject of intense research in the field of regenerative medicine, including their potential use in companion animals, such as dogs. To ensure the safety of canine MSC batches for their application in regenerative medicine, a quality control test must be conducted in accordance with Good Manufacturing Practices (GMP). Based on guidance provided by the European Medicines Agency, this study aimed to develop and validate a highly sensitive and robust, nucleic acid-based test panel for the detection of various canine pathogens. Analytical sensitivity, specificity, amplification efficiency, and linearity were evaluated to ensure robust assessment. Additionally, viable spike-in controls were used to control for optimal nucleic acid extraction. The conventional PCR-based and real-time PCR-based pathogen assays were evaluated in a real-life setting, by direct testing MSC batches. The established nucleic acid-based assays displayed remarkable sensitivity, detecting 100–1 copies/reaction of template DNA. They also exhibited high specificity and efficiency. Moreover, highly effective nucleic acid isolation was confirmed by the sensitive detection of spike-in controls. The detection capacity of our optimized and validated methods was determined by direct pathogen testing of nine MSC batches that displayed unusual phenotypes, such as reduced cell division or other deviating characteristics. Among these MCS batches of uncertain purity, only one tested negative for all pathogens. The direct testing of these samples yielded positive results for important canine pathogens, including tick-borne disease-associated species and viral members of the canine infectious respiratory disease complex (CIRDC). Notably, samples positive for the etiological agents responsible for enteritis (CPV), leptospirosis (Leptospira interrogans), and neosporosis (Neospora caninum) were also identified. Furthermore, we conducted biosafety evaluation of 12 MSC batches intended for therapeutic application. Eleven MSC batches were found to be free of extraneous agents, and only one tested positive for a specific pathogen, namely, canine parvovirus. In this study, we established and validated reliable, highly sensitive, and accurate nucleic acid-based testing methods for a broad spectrum of canine pathogens.
间充质干细胞(MSCs)的作用是再生医学领域激烈研究的主题,包括它们在伴侣动物(如狗)中的潜在应用。为了确保用于再生医学的犬间充质干细胞批次的安全性,必须按照良好生产规范(GMP)进行质量控制测试。根据欧洲药品管理局提供的指导,本研究旨在开发和验证一种高度敏感和强大的核酸检测试剂盒,用于检测各种犬类病原体。对分析灵敏度、特异性、扩增效率和线性度进行评估,以确保评估的稳健性。此外,可行的峰值控制,以控制最佳核酸提取。通过直接检测MSC批次,在现实环境中评估传统的基于pcr的和实时基于pcr的病原体检测。建立的基于核酸的检测方法显示出显著的灵敏度,检测100-1拷贝/反应的模板DNA。它们也表现出高特异性和高效率。此外,高灵敏度检测的峰值控制证实了高效的核酸分离。我们优化和验证的方法的检测能力是通过对9批显示异常表型(如细胞分裂减少或其他偏离特征)的MSC进行直接病原体检测来确定的。在这些不确定纯度的MCS批次中,只有一批对所有病原体检测呈阴性。对这些样本的直接检测对重要的犬类病原体产生了阳性结果,包括蜱传疾病相关物种和犬传染性呼吸道疾病复合物(CIRDC)的病毒成员。值得注意的是,还发现了肠炎(CPV)、钩端螺旋体病(钩端螺旋体)和新孢子虫病(犬新孢子虫)病原学因子阳性的样本。此外,我们对12批用于治疗应用的MSC进行了生物安全性评估。11批MSC被发现不含外来因子,只有一批检测出特定病原体阳性,即犬细小病毒。在本研究中,我们建立并验证了可靠、高灵敏度和准确的基于核酸的广谱犬病原体检测方法。
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引用次数: 0
Musashi-2 Deficiency Triggers Colorectal Cancer Ferroptosis by Downregulating the MAPK Signaling Cascade to Inhibit HSPB1 Phosphorylation. Musashi-2缺乏通过下调MAPK信号级联抑制HSPB1磷酸化引发结直肠癌铁凋亡。
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-12-01 DOI: 10.1186/s12575-023-00222-1
Xiaole Meng, Xiao Peng, Wanxin Ouyang, Hui Li, Risi Na, Wenting Zhou, Xuting You, Yuhuan Li, Xin Pu, Ke Zhang, Junjie Xia, Jie Wang, Guohong Zhuang, Huamei Tang, Zhihai Peng

Background: Musashi-2 (MSI2) is a critical RNA-binding protein (RBP) whose ectopic expression drives the pathogenesis of various cancers. Accumulating evidence suggests that inducing ferroptosis of tumor cells can inhibit their malignant biological behavior as a promising therapeutic approach. However, it is unclear whether MSI2 regulates cell death in colorectal cancer (CRC), especially the underlying mechanisms and biological effects in CRC ferroptosis remain elusive.

Methods: Experimental methods including qRT‒PCR, immunofluorescence, flow cytometry, western blot, co-immunoprecipitation, CCK-8, colony formation assay, in vitro cell transwell migration and invasion assays, in vivo xenograft tumor experiments, liver and lung CRC metastasis models, CAC mice models, transmission electron microscopy, immunohistochemistry, histopathology, 4D label-free proteomics sequencing, bioinformatic and database analysis were used in this study.

Results: Here, we investigated that MSI2 was upregulated in CRC and positively correlated with ferroptosis inhibitor molecules. MSI2 deficiency suppressed CRC malignancy by inhibiting cell proliferation, viability, migration and invasion in vitro and in vivo; and MSI2 deficiency triggered CRC ferroptosis by changing the intracellular redox state (ROS levels and lipid peroxidation), erastin induced cell mortality and viability, iron homeostasis (intracellular total irons and ferrous irons), reduced glutathione (GSH) levels and mitochondrial injury. Mechanistically, through 4D-lable free proteomics analysis on SW620 stable cell lines, we demonstrated that MSI2 directly interacted with p-ERK and MSI2 knockdown downregulated the p-ERK/p38/MAPK axis signaling pathway, which further repressed MAPKAPK2 and HPSB1 phosphorylation, leading to decreased expression of PCNA and Ki67 and increased expression of ACSL4 in cancer cells. Furthermore, HSPB1 could rescue the phenotypes of MSI2 deficiency on CRC ferroptosis in vitro and in vivo.

Conclusions: This study indicates that MSI2 deficiency suppresses the growth and survival of CRC cells and promotes ferroptosis by inactivating the MAPK signaling pathway to inhibit HSPB1 phosphorylation, which leads to downregulation of PCNA and Ki67 and upregulation of ACSL4 in cancer cells and subsequently induces redox imbalance, iron accumulation and mitochondrial shrinkage, ultimately triggering ferroptosis. Therefore, targeted inhibition of MSI2/MAPK/HSPB1 axis to promote ferroptosis might be a potential treatment strategy for CRC.

背景:Musashi-2 (MSI2)是一种重要的rna结合蛋白(RBP),其异位表达驱动多种癌症的发病机制。越来越多的证据表明,诱导肿瘤细胞铁下垂可以抑制其恶性生物学行为,是一种很有前景的治疗方法。然而,目前尚不清楚MSI2是否调节结直肠癌(CRC)的细胞死亡,特别是CRC铁上吊的潜在机制和生物学效应仍不清楚。方法:采用qRT-PCR、免疫荧光、流式细胞术、western blot、共免疫沉淀、CCK-8、菌落形成试验、体外细胞跨井迁移和侵袭试验、体内异种移植肿瘤实验、肝、肺结直肠癌转移模型、CAC小鼠模型、透射电镜、免疫组织化学、组织病理学、4D无标记蛋白质组学测序、生物信息学和数据库分析等实验方法。结果:我们研究了MSI2在结直肠癌中表达上调,并与铁下垂抑制剂分子呈正相关。MSI2缺乏通过抑制细胞增殖、活力、迁移和侵袭来抑制结直肠癌恶性肿瘤;MSI2缺乏通过改变细胞内氧化还原状态(ROS水平和脂质过氧化)、erastin诱导的细胞死亡和活力、铁稳态(细胞内总铁和亚铁)、谷胱甘肽(GSH)水平降低和线粒体损伤引发结直肠癌铁凋亡。在机制上,通过对SW620稳定细胞系的4d标记自由蛋白质组学分析,我们发现MSI2直接与p-ERK相互作用,MSI2的敲低下调p-ERK/p38/MAPK轴信号通路,进一步抑制MAPKAPK2和HPSB1磷酸化,导致癌细胞中PCNA和Ki67的表达降低,ACSL4的表达增加。此外,在体外和体内,HSPB1可以挽救MSI2缺陷对CRC铁上吊的表型。结论:本研究表明,MSI2缺乏通过使MAPK信号通路失活,抑制HSPB1磷酸化,导致癌细胞中PCNA和Ki67下调,ACSL4上调,进而诱导氧化还原失衡、铁积累和线粒体收缩,从而抑制CRC细胞的生长和存活,促进铁凋亡。因此,靶向抑制MSI2/MAPK/HSPB1轴促进铁下垂可能是CRC的一种潜在治疗策略。
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引用次数: 0
Screening of Natural Compounds for CYP11A1 Stimulation Against Cell Renal Cell Carcinoma. CYP11A1刺激肾细胞癌天然化合物的筛选
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-11-30 DOI: 10.1186/s12575-023-00225-y
Hien Thi My Ong, Eda Ates, Oh-Seung Kwon, Min-Jung Kang

Background: Renal cancer therapies are challenging owing to the extensive spreading of this cancer to other organs and its ability to pose resistance to current medications. Therefore, drugs targeting novel targets are urgently required to overcome these challenges. The cholesterol side-chain cleavage enzyme (CYP11A1) is closely associated with steroidogenesis, and its downregulation is linked to adrenal dysfunction and several types of carcinoma. We previously found that overexpression of CYP11A1 inhibited epithelial-mesenchymal transition and induced G2/M arrest in the kidney cancer Caki-1 cell line. In this context, natural compounds that exhibit potent CYP11A1 stimulation activity can be promising therpaeutic agents for kidney cancer.

Methods: We screened a panel of 1374 natural compounds in a wound-healing assay using CYP11A1-transfected Caki-1 cells. Of these, 167 promising biologically active compounds that inhibited cancer cell migration by more than 75% were selected, and their half-maximal inhibitory concentrations (IC50) were determined. The IC50 of 159 compounds was determined and 38 compounds with IC50 values less than 50 µM were selected for further analysis. Steroid hormones (cholesterol and pregnenolone) levels in cells treated with the selected compounds were quantitated using LC-MS/MS to determine their effect on CYP11A1 activity. Western blotting for CYP11A1, autophagy signaling proteins, and ferroptosis regulators were performed to ivestigate the mechanisms underlying the action of the selected compounds.

Results: We screened five promising natural lead compounds that inhibited cancer cell proliferation after three screening steps. The IC50 of these compounds was determined to be between 5.9 and 14.6 μM. These candidate compounds increased the expression of CYP11A1 and suppressed cholesterol levels while increasing pregnenolone levels, which is consistent with the activation of CYP11A1. Our results showed that CYP11A1 activation inhibited the migration of cancer cells, promoted ferroptosis, and triggered autophagy signaling.

Conclusions: This study indicates that the CYP11A1-overexpressing Caki-1 cell line is useful for screening drugs against kidney cancer. The two selected compounds could be utilized as lead compounds for anticancer drug discovery, and specifically for the development of antirenal cancer medication.

背景:肾癌的治疗具有挑战性,因为这种癌症广泛扩散到其他器官,并且能够对现有药物产生耐药性。因此,迫切需要针对新靶点的药物来克服这些挑战。胆固醇侧链切割酶(CYP11A1)与类固醇生成密切相关,其下调与肾上腺功能障碍和几种类型的癌症有关。我们之前在肾癌Caki-1细胞系中发现过表达CYP11A1抑制上皮-间质转化并诱导G2/M阻滞。在这种情况下,表现出强效CYP11A1刺激活性的天然化合物可能是治疗肾癌的有希望的药物。方法:我们用转染cyp11a1的Caki-1细胞在伤口愈合试验中筛选了1374种天然化合物。从中选择了167种抑制癌细胞迁移率超过75%的有前景的生物活性化合物,并测定了它们的半最大抑制浓度(IC50)。测定了159个化合物的IC50值,筛选出IC50值小于50µM的38个化合物进行进一步分析。使用LC-MS/MS定量测定经选定化合物处理的细胞中的类固醇激素(胆固醇和孕烯醇酮)水平,以确定其对CYP11A1活性的影响。对CYP11A1、自噬信号蛋白和铁死亡调节因子进行Western blotting,以研究所选化合物作用的机制。结果:经过三步筛选,我们筛选出了5种抑制癌细胞增殖的天然先导化合物。这些化合物的IC50在5.9 ~ 14.6 μM之间。这些候选化合物增加了CYP11A1的表达,抑制了胆固醇水平,同时增加了孕烯醇酮水平,这与CYP11A1的激活一致。我们的研究结果表明,CYP11A1的激活抑制了癌细胞的迁移,促进了铁下垂,并触发了自噬信号。结论:本研究提示cyp11a1过表达的Caki-1细胞系可用于筛选抗肾癌药物。这两种化合物可以作为抗癌药物的先导化合物,特别是抗肾癌药物的开发。
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引用次数: 0
D-allose Inhibits TLR4/PI3K/AKT Signaling to Attenuate Neuroinflammation and Neuronal Apoptosis by Inhibiting Gal-3 Following Ischemic Stroke. D-allose抑制TLR4/PI3K/AKT信号通过抑制Gal-3减轻缺血性脑卒中后神经炎症和神经元凋亡
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-11-28 DOI: 10.1186/s12575-023-00224-z
Yaowen Luo, Junkai Cheng, Yihao Fu, Min Zhang, Maorong Gou, Juan Li, Xiaobing Li, Jing Bai, Yuefei Zhou, Lei Zhang, Dakuan Gao

Background: Ischemic stroke (IS) occurs when a blood vessel supplying the brain becomes obstructed, resulting in cerebral ischemia. This type of stroke accounts for approximately 87% of all strokes. Globally, IS leads to high mortality and poor prognosis and is associated with neuroinflammation and neuronal apoptosis. D-allose is a bio-substrate of glucose that is widely expressed in many plants. Our previous study showed that D-allose exerted neuroprotective effects against acute cerebral ischemic/reperfusion (I/R) injury by reducing neuroinflammation. Here, we aimed to clarify the beneficial effects D-allose in suppressing IS-induced neuroinflammation damage, cytotoxicity, neuronal apoptosis and neurological deficits and the underlying mechanism in vitro and in vivo.

Methods: In vivo, an I/R model was induced by middle cerebral artery occlusion and reperfusion (MCAO/R) in C57BL/6 N mice, and D-allose was given by intraperitoneal injection within 5 min after reperfusion. In vitro, mouse hippocampal neuronal cells (HT-22) with oxygen-glucose deprivation and reperfusion (OGD/R) were established as a cell model of IS. Neurological scores, some cytokines, cytotoxicity and apoptosis in the brain and cell lines were measured. Moreover, Gal-3 short hairpin RNAs, lentiviruses and adeno-associated viruses were used to modulate Gal-3 expression in neurons in vitro and in vivo to reveal the molecular mechanism.

Results: D-allose alleviated cytotoxicity, including cell viability, LDH release and apoptosis, in HT-22 cells after OGD/R, which also alleviated brain injury, as indicated by lesion volume, brain edema, neuronal apoptosis, and neurological functional deficits, in a mouse model of I/R. Moreover, D-allose decreased the release of inflammatory factors, such as IL-1β, IL-6 and TNF-α. Furthermore, the expression of Gal-3 was increased by I/R in wild-type mice and HT-22 cells, and this factor further bound to TLR4, as confirmed by three-dimensional structure prediction and Co-IP. Silencing the Gal-3 gene with shRNAs decreased the activation of TLR4 signaling and alleviated IS-induced neuroinflammation, apoptosis and brain injury. Importantly, the loss of Gal-3 enhanced the D-allose-mediated protection against I/R-induced HT-22 cell injury, inflammatory insults and apoptosis, whereas activation of TLR4 by the selective agonist LPS increased the degree of neuronal injury and abolished the protective effects of D-allose.

Conclusions: In summary, D-allose plays a crucial role in inhibiting inflammation after IS by suppressing Gal-3/TLR4/PI3K/AKT signaling pathway in vitro and in vivo.

背景:缺血性中风(IS)发生时,供应大脑的血管阻塞,导致脑缺血。这种类型的中风约占所有中风的87%。在全球范围内,IS导致高死亡率和不良预后,并与神经炎症和神经元凋亡有关。D-allose是葡萄糖的生物底物,在许多植物中广泛表达。我们之前的研究表明,D-allose通过减少神经炎症对急性脑缺血/再灌注(I/R)损伤具有神经保护作用。在这里,我们旨在阐明D-allose在抑制is诱导的神经炎症损伤、细胞毒性、神经元凋亡和神经功能缺陷方面的有益作用,以及体外和体内的潜在机制。方法:在体内建立C57BL/ 6n小鼠大脑中动脉闭塞再灌注(MCAO/R)模型,在再灌注后5min内腹腔注射D-allose。体外建立氧糖剥夺再灌注(OGD/R)小鼠海马神经元细胞(HT-22)作为IS细胞模型。测定脑和细胞系的神经学评分、部分细胞因子、细胞毒性和凋亡。此外,利用Gal-3短发夹rna、慢病毒和腺相关病毒在体外和体内调节神经元中Gal-3的表达,揭示其分子机制。结果:D-allose减轻了OGD/R小鼠模型中HT-22细胞的细胞毒性,包括细胞活力、LDH释放和凋亡,并减轻了脑损伤,表现为损伤体积、脑水肿、神经元凋亡和神经功能缺损。此外,D-allose还能降低炎症因子IL-1β、IL-6和TNF-α的释放。此外,在野生型小鼠和HT-22细胞中,通过I/R增加了Gal-3的表达,并通过三维结构预测和Co-IP证实了该因子进一步与TLR4结合。用shRNAs沉默Gal-3基因可降低TLR4信号的激活,减轻is诱导的神经炎症、细胞凋亡和脑损伤。重要的是,Gal-3的缺失增强了D-allose介导的对I/ r诱导的HT-22细胞损伤、炎症损伤和凋亡的保护作用,而TLR4被选择性激动剂LPS激活增加了神经元损伤的程度,并消除了D-allose的保护作用。综上所述,在体外和体内实验中,D-allose通过抑制Gal-3/TLR4/PI3K/AKT信号通路,在IS后炎症抑制中发挥了至关重要的作用。
{"title":"D-allose Inhibits TLR4/PI3K/AKT Signaling to Attenuate Neuroinflammation and Neuronal Apoptosis by Inhibiting Gal-3 Following Ischemic Stroke.","authors":"Yaowen Luo, Junkai Cheng, Yihao Fu, Min Zhang, Maorong Gou, Juan Li, Xiaobing Li, Jing Bai, Yuefei Zhou, Lei Zhang, Dakuan Gao","doi":"10.1186/s12575-023-00224-z","DOIUrl":"10.1186/s12575-023-00224-z","url":null,"abstract":"<p><strong>Background: </strong>Ischemic stroke (IS) occurs when a blood vessel supplying the brain becomes obstructed, resulting in cerebral ischemia. This type of stroke accounts for approximately 87% of all strokes. Globally, IS leads to high mortality and poor prognosis and is associated with neuroinflammation and neuronal apoptosis. D-allose is a bio-substrate of glucose that is widely expressed in many plants. Our previous study showed that D-allose exerted neuroprotective effects against acute cerebral ischemic/reperfusion (I/R) injury by reducing neuroinflammation. Here, we aimed to clarify the beneficial effects D-allose in suppressing IS-induced neuroinflammation damage, cytotoxicity, neuronal apoptosis and neurological deficits and the underlying mechanism in vitro and in vivo.</p><p><strong>Methods: </strong>In vivo, an I/R model was induced by middle cerebral artery occlusion and reperfusion (MCAO/R) in C57BL/6 N mice, and D-allose was given by intraperitoneal injection within 5 min after reperfusion. In vitro, mouse hippocampal neuronal cells (HT-22) with oxygen-glucose deprivation and reperfusion (OGD/R) were established as a cell model of IS. Neurological scores, some cytokines, cytotoxicity and apoptosis in the brain and cell lines were measured. Moreover, Gal-3 short hairpin RNAs, lentiviruses and adeno-associated viruses were used to modulate Gal-3 expression in neurons in vitro and in vivo to reveal the molecular mechanism.</p><p><strong>Results: </strong>D-allose alleviated cytotoxicity, including cell viability, LDH release and apoptosis, in HT-22 cells after OGD/R, which also alleviated brain injury, as indicated by lesion volume, brain edema, neuronal apoptosis, and neurological functional deficits, in a mouse model of I/R. Moreover, D-allose decreased the release of inflammatory factors, such as IL-1β, IL-6 and TNF-α. Furthermore, the expression of Gal-3 was increased by I/R in wild-type mice and HT-22 cells, and this factor further bound to TLR4, as confirmed by three-dimensional structure prediction and Co-IP. Silencing the Gal-3 gene with shRNAs decreased the activation of TLR4 signaling and alleviated IS-induced neuroinflammation, apoptosis and brain injury. Importantly, the loss of Gal-3 enhanced the D-allose-mediated protection against I/R-induced HT-22 cell injury, inflammatory insults and apoptosis, whereas activation of TLR4 by the selective agonist LPS increased the degree of neuronal injury and abolished the protective effects of D-allose.</p><p><strong>Conclusions: </strong>In summary, D-allose plays a crucial role in inhibiting inflammation after IS by suppressing Gal-3/TLR4/PI3K/AKT signaling pathway in vitro and in vivo.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"30"},"PeriodicalIF":6.4,"publicationDate":"2023-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10683335/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138450825","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of exosome protein panels as predictive biomarkers for non-small cell lung cancer. 外泌体蛋白面板作为非小细胞肺癌的预测性生物标志物的鉴定。
IF 3.7 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-11-13 DOI: 10.1186/s12575-023-00223-0
Bin Luo, Zujun Que, Xinyi Lu, Dan Qi, Zhi Qiao, Yun Yang, Fangfang Qian, Yi Jiang, Yan Li, Ronghu Ke, Xiaoyun Shen, Hua Xiao, Hegen Li, Erxi Wu, Jianhui Tian

Background: Non-small cell lung cancer (NSCLC) remains a leading cause of cancer-related deaths worldwide, primarily due to its propensity for metastasis. Patients diagnosed with localized primary cancer have higher survival rates than those with metastasis. Thus, it is imperative to discover biomarkers for the early detection of NSCLC and the timely prediction of tumor metastasis to improve patient outcomes.

Methods: Here, we utilized an integrated approach to isolate and characterize plasma exosomes from NSCLC patients as well as healthy individuals. We then conducted proteomics analysis and parallel reaction monitoring to identify and validate the top-ranked proteins of plasma exosomes.

Results: Our study revealed that the proteome in exosomes from NSCLC patients with metastasis was distinctly different from that from healthy individuals. The former had larger diameters and lower concentrations of exosomes than the latter. Furthermore, among the 1220 identified exosomal proteins, we identified two distinct panels of biomarkers. The first panel of biomarkers (FGB, FGG, and VWF) showed potential for early NSCLC diagnosis and demonstrated a direct correlation with the survival duration of NSCLC patients. The second panel of biomarkers (CFHR5, C9, and MBL2) emerged as potential biomarkers for assessing NSCLC metastasis, of which CFHR5 alone was significantly associated with the overall survival of NSCLC patients.

Conclusions: These findings underscore the potential of plasma exosomal biomarkers for early NSCLC diagnosis and metastasis prediction. Notably, CFHR5 stands out as a promising prognostic indicator for NSCLC patients. The clinical utility of exosomal biomarkers offers the potential to enhance the management of NSCLC.

背景:非小细胞肺癌(NSCLC)仍然是世界范围内癌症相关死亡的主要原因,主要是由于其转移倾向。诊断为局部原发癌的患者比有转移的患者生存率更高。因此,发现生物标志物,早期发现非小细胞肺癌,及时预测肿瘤转移,改善患者预后势在必行。方法:在这里,我们采用一种综合方法分离和表征非小细胞肺癌患者和健康个体的血浆外泌体。然后,我们进行了蛋白质组学分析和平行反应监测,以鉴定和验证血浆外泌体中排名靠前的蛋白质。结果:我们的研究表明,转移的NSCLC患者外泌体中的蛋白质组与健康个体有明显差异。前者比后者直径更大,外泌体浓度更低。此外,在鉴定的1220个外泌体蛋白中,我们鉴定了两组不同的生物标志物。第一组生物标志物(FGB、FGG和VWF)显示出早期非小细胞肺癌诊断的潜力,并与非小细胞肺癌患者的生存时间直接相关。第二组生物标志物(CFHR5、C9和MBL2)成为评估NSCLC转移的潜在生物标志物,其中CFHR5单独与NSCLC患者的总生存率显著相关。结论:这些发现强调了血浆外泌体生物标志物在早期非小细胞肺癌诊断和转移预测中的潜力。值得注意的是,CFHR5作为非小细胞肺癌患者的一个有希望的预后指标脱颖而出。外泌体生物标志物的临床应用为加强非小细胞肺癌的治疗提供了潜力。
{"title":"Identification of exosome protein panels as predictive biomarkers for non-small cell lung cancer.","authors":"Bin Luo, Zujun Que, Xinyi Lu, Dan Qi, Zhi Qiao, Yun Yang, Fangfang Qian, Yi Jiang, Yan Li, Ronghu Ke, Xiaoyun Shen, Hua Xiao, Hegen Li, Erxi Wu, Jianhui Tian","doi":"10.1186/s12575-023-00223-0","DOIUrl":"10.1186/s12575-023-00223-0","url":null,"abstract":"<p><strong>Background: </strong>Non-small cell lung cancer (NSCLC) remains a leading cause of cancer-related deaths worldwide, primarily due to its propensity for metastasis. Patients diagnosed with localized primary cancer have higher survival rates than those with metastasis. Thus, it is imperative to discover biomarkers for the early detection of NSCLC and the timely prediction of tumor metastasis to improve patient outcomes.</p><p><strong>Methods: </strong>Here, we utilized an integrated approach to isolate and characterize plasma exosomes from NSCLC patients as well as healthy individuals. We then conducted proteomics analysis and parallel reaction monitoring to identify and validate the top-ranked proteins of plasma exosomes.</p><p><strong>Results: </strong>Our study revealed that the proteome in exosomes from NSCLC patients with metastasis was distinctly different from that from healthy individuals. The former had larger diameters and lower concentrations of exosomes than the latter. Furthermore, among the 1220 identified exosomal proteins, we identified two distinct panels of biomarkers. The first panel of biomarkers (FGB, FGG, and VWF) showed potential for early NSCLC diagnosis and demonstrated a direct correlation with the survival duration of NSCLC patients. The second panel of biomarkers (CFHR5, C9, and MBL2) emerged as potential biomarkers for assessing NSCLC metastasis, of which CFHR5 alone was significantly associated with the overall survival of NSCLC patients.</p><p><strong>Conclusions: </strong>These findings underscore the potential of plasma exosomal biomarkers for early NSCLC diagnosis and metastasis prediction. Notably, CFHR5 stands out as a promising prognostic indicator for NSCLC patients. The clinical utility of exosomal biomarkers offers the potential to enhance the management of NSCLC.</p>","PeriodicalId":8960,"journal":{"name":"Biological Procedures Online","volume":"25 1","pages":"29"},"PeriodicalIF":3.7,"publicationDate":"2023-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10641949/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89716866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extracellular Vesicles for Drug Delivery in Cancer Treatment. 癌症治疗中用于药物递送的细胞外囊泡。
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-11-09 DOI: 10.1186/s12575-023-00220-3
Li Wang, Xin Yu, Juan Zhou, Chunxia Su

Extracellular vesicles (EVs) are nanoscale vesicles derived from cells that mediate intercellular communication by transporting bioactive molecules. They play significant roles in various physiological and pathological conditions. EVs hold great potential as novel biomarkers of diseases, therapeutic agents, and drug delivery vehicles. Furthermore, EVs as novel drug delivery vehicles have demonstrated significant advantages in preclinical settings. In this review, we discussed the biogenesis and characteristics of EVs and their functions in cancer. We summarize the therapeutic applications of EVs as a natural delivery vehicles in cancer therapy. We highlight the existing challenges, illuminate vital questions, and propose recommendations to effectively address them effectively.

细胞外囊泡(EVs)是一种纳米级囊泡,来源于通过转运生物活性分子介导细胞间通讯的细胞。它们在各种生理和病理条件下发挥着重要作用。电动汽车作为疾病的新型生物标志物、治疗剂和药物递送载体具有巨大的潜力。此外,电动汽车作为新型药物递送载体在临床前环境中表现出显著优势。在这篇综述中,我们讨论了EVs的生物发生、特征及其在癌症中的作用。我们总结了电动汽车作为一种天然载体在癌症治疗中的应用。我们强调了现有的挑战,阐明了重要问题,并提出了有效应对这些挑战的建议。
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引用次数: 0
Visualisation of Bluetongue Virus in the Salivary Apparatus of Culicoides Biting Midges Highlights the Accessory Glands as a Primary Arboviral Infection Site. 蓝舌病毒在库蚊叮咬Midges的唾液器中的可视化突出显示副腺是主要的虫媒病毒感染部位。
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-11-06 DOI: 10.1186/s12575-023-00221-2
Marc Guimerà Busquets, Faye V Brown, Simon T Carpenter, Karin E Darpel, Christopher J Sanders

Background: Arthropods transmit a wide range of pathogens of importance for the global health of humans, animals, and plants. One group of these arthropod vectors, Culicoides biting midges (Diptera: Ceratopogonidae), is the biological vector of several human and animal pathogens, including economically important livestock viruses like bluetongue virus (BTV). Like other arthropod-borne viruses (arboviruses), Culicoides-borne viruses must reach and replicate in the salivary apparatus, from where they can be transmitted to susceptible hosts through the saliva during subsequent blood feeding. Despite the importance of the salivary gland apparatus for pathogen transmission to susceptible animals from the bite of infected Culicoides, these structures have received relatively little attention, perhaps due to the small size and fragility of these vectors.

Results: In this study, we developed techniques to visualize the infection of the salivary glands and other soft tissues with BTV, in some of the smallest known arbovirus vectors, Culicoides biting midges, using three-dimensional immunofluorescence confocal microscopy. We showed BTV infection of specific structures of the salivary gland apparatus of female Culicoides vectors following oral virus uptake, related visualisation of viral infection in the salivary apparatus to high viral RNA copies in the body, and demonstrated for the first time, that the accessory glands are a primary site for BTV replication within the salivary apparatus.

Conclusions: Our work has revealed a novel site of virus-vector interactions, and a novel role of the accessory glands of Culicoides in arbovirus amplification and transmission. Our approach would also be applicable to a wide range of arbovirus vector groups including sand flies (Diptera: Psychodidae), as well as provide a powerful tool to investigate arbovirus infection and dissemination, particularly where there are practical challenges in the visualization of small size and delicate tissues of arthropods.

背景:节肢动物传播广泛的病原体,对人类、动物和植物的全球健康具有重要意义。其中一组节肢动物媒介,噬蚊蚊(Diptera:Ceratogonidae),是几种人类和动物病原体的生物媒介,包括经济上重要的牲畜病毒,如蓝舌病毒(BTV)。与其他节肢动物传播的病毒(虫媒病毒)一样,库蚊传播的病毒必须到达唾液器官并在唾液器官中复制,在随后的血液喂养过程中,它们可以通过唾液传播给易感宿主。尽管唾液腺装置对于病原体通过被感染的库蚊叮咬传播给易感动物很重要,但这些结构相对较少受到关注,可能是因为这些媒介的体积小且脆弱。结果:在这项研究中,我们开发了一种技术,使用三维免疫荧光共聚焦显微镜,在一些已知最小的虫媒病毒载体——叮咬蚊中,观察BTV对唾液腺和其他软组织的感染。我们展示了口服病毒摄入后雌性库蚊载体唾液腺器官特定结构的BTV感染,唾液器官中病毒感染与体内高病毒RNA拷贝的相关可视化,并首次证明了副腺是唾液器官内BTV复制的主要位点。结论:我们的工作揭示了病毒-载体相互作用的一个新位点,以及库蚊副腺在虫媒病毒扩增和传播中的新作用。我们的方法也适用于包括沙蝇在内的多种虫媒病毒病媒群体,并为研究虫媒病毒感染和传播提供了一个强大的工具,特别是在节肢动物小而脆弱的组织可视化方面存在实际挑战的情况下。
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引用次数: 0
A Novel Dual-Reporter System Reveals Distinct Characteristics of Exosome-Mediated Protein Secretion in Human Cells. 一种新的双报告系统揭示了人类细胞中外泌体介导的蛋白质分泌的独特特征。
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-09-20 DOI: 10.1186/s12575-023-00219-w
Christopher Olson, Pengyang Zhang, Joy Ku, Renceh Flojo, Darin Boyes, Biao Lu

Background: Exosomes, a special subtype of extracellular vesicles derived from human cells, serve as vital mediators of intercellular communication by transporting diverse bioactive cargos, including proteins and enzymes. However, the underlying mechanisms governing exosome secretion and regulation remain poorly understood. In this study, we employed a dual-reporter system consisting of bioluminescent Gaussia luciferase and fluorescent proteins to investigate the dynamics and regulation of exosome secretion in cultured human cells.

Results: Our results demonstrated that the engineered dual-reporters effectively monitored both exosome-mediated and ER-Golgi-mediated secretory pathways in a specific and quantitative manner. Notably, we observed distinct characteristics of exosome-mediated protein secretion, including significantly lower capacity and different dynamics compared to the ER-Golgi pathway. This phenomenon was observed in human kidney 293T cells and liver HepG2 cells, emphasizing the conserved nature of exosome-mediated secretion across cell types. Furthermore, we investigated the impact of brefeldin A (BFA), an inhibitor of ER-to-Golgi membrane trafficking, on protein secretion. Interestingly, BFA inhibited protein secretion via the ER-Golgi pathway while stimulating exosome-mediated protein secretion under same experimental conditions.

Conclusions: Collectively, our study highlights the utility of the dual-reporter system for real-time monitoring and quantitative analysis of protein secretion through conventional ER-Golgi and unconventional exosome pathways. Moreover, our findings unveil distinct features of exosome-mediated protein secretion, shedding light on its differential capacity, dynamics, and regulatory mechanisms compared to ER-Golgi-mediated proteins in human cells.

背景:外泌体是来源于人类细胞的一种特殊的细胞外小泡亚型,通过运输包括蛋白质和酶在内的多种生物活性物质,作为细胞间通讯的重要介质。然而,控制外泌体分泌和调节的潜在机制仍知之甚少。在这项研究中,我们使用了一个由生物发光的Gaussia萤光素酶和荧光蛋白组成的双报告系统来研究培养的人类细胞中外泌体分泌的动力学和调节。结果:我们的结果表明,工程化的双报告子以特定和定量的方式有效地监测了外泌体介导的和ER-Golgi介导的分泌途径。值得注意的是,我们观察到外泌体介导的蛋白质分泌的不同特征,包括与ER-Golgi途径相比显著更低的能力和不同的动力学。在人肾脏293T细胞和肝脏HepG2细胞中观察到了这种现象,强调了外泌体介导的跨细胞类型分泌的保守性。此外,我们还研究了纤维蛋白原A(BFA)对蛋白质分泌的影响,它是ER向高尔基体膜运输的抑制剂。有趣的是,在相同的实验条件下,BFA通过ER-Golgi途径抑制蛋白质分泌,同时刺激外泌体介导的蛋白质分泌。结论:总的来说,我们的研究强调了双报告系统通过常规ER高尔基体和非常规外泌体途径实时监测和定量分析蛋白质分泌的实用性。此外,我们的发现揭示了外泌体介导的蛋白质分泌的独特特征,揭示了其与人类细胞中ER-Golgi介导的蛋白相比的不同能力、动力学和调节机制。
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引用次数: 0
Comparison of two protocols for the generation of iPSC-derived human astrocytes. iPSC衍生的人类星形胶质细胞生成的两种方案的比较。
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-09-20 DOI: 10.1186/s12575-023-00218-x
Patrycja Mulica, Carmen Venegas, Zied Landoulsi, Katja Badanjak, Sylvie Delcambre, Maria Tziortziou, Soraya Hezzaz, Jenny Ghelfi, Semra Smajic, Jens Schwamborn, Rejko Krüger, Paul Antony, Patrick May, Enrico Glaab, Anne Grünewald, Sandro L Pereira

Background: Astrocytes have recently gained attention as key contributors to the pathogenesis of neurodegenerative disorders including Parkinson's disease. To investigate human astrocytes in vitro, numerous differentiation protocols have been developed. However, the properties of the resulting glia are inconsistent, which complicates the selection of an appropriate method for a given research question. Thus, we compared two approaches for the generation of iPSC-derived astrocytes. We phenotyped glia that were obtained employing a widely used long, serum-free ("LSF") method against an in-house established short, serum-containing ("SSC") protocol which allows for the generation of astrocytes and midbrain neurons from the same precursor cells.

Results: We employed high-content confocal imaging and RNA sequencing to characterize the cultures. The astrocytes generated with the LSF or SSC protocols differed considerably in their properties: while the former cells were more labor-intense in their generation (5 vs 2 months), they were also more mature. This notion was strengthened by data resulting from cell type deconvolution analysis that was applied to bulk transcriptomes from the cultures to assess their similarity with human postmortem astrocytes.

Conclusions: Overall, our analyses highlight the need to consider the advantages and disadvantages of a given differentiation protocol, when designing functional or drug discovery studies involving iPSC-derived astrocytes.

背景:星形胶质细胞最近作为包括帕金森病在内的神经退行性疾病发病机制的关键因素而受到关注。为了在体外研究人类星形胶质细胞,已经开发了许多分化方案。然而,所产生的神经胶质的性质是不一致的,这使得为给定的研究问题选择合适的方法变得复杂。因此,我们比较了两种产生iPSC衍生星形胶质细胞的方法。我们对使用广泛使用的长无血清(“LSF”)方法获得的胶质细胞进行表型分析,反对内部建立的短含血清(“SSC”)方案,该方案允许从相同的前体细胞产生星形胶质细胞和中脑神经元。结果:我们采用高含量共聚焦成像和RNA测序来表征培养物。用LSF或SSC方案产生的星形胶质细胞在性质上有很大差异:虽然前一代细胞的劳动强度更大(5个月对2个月),但它们也更成熟。细胞类型去卷积分析的数据强化了这一概念,该分析应用于培养物的大量转录组,以评估其与人类死后星形胶质细胞的相似性。结论:总的来说,我们的分析强调,在设计涉及iPSC衍生的星形胶质细胞的功能性或药物发现研究时,需要考虑给定分化方案的优缺点。
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引用次数: 0
Immune Activation Effects at Different Irradiated Sites and Optimal Timing of Radioimmunotherapy in Patients with Extensive-Stage Small Cell Lung Cancer: a Real-World Analysis. 广泛期小细胞肺癌患者不同照射部位的免疫激活效应和放射免疫治疗的最佳时机:现实世界分析
IF 6.4 3区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2023-09-14 DOI: 10.1186/s12575-023-00217-y
Min Wu, Shihao Wu, Yuetong Chen, Liangchao Sun, Jundong Zhou

Background: In view of the limited data on radiotherapy (RT) combined with immunotherapy in patients with extensive-stage small cell lung cancer (ES-SCLC), this study aimed to identify the immune activation effect on different sites and the survival outcomes of radioimmunotherapy at different treatment stages.

Methods: Forty-five patients diagnosed with ES-SCLC were included in this retrospective analysis. We collected the overall survival (OS) of the patients,, recorded the blood cell counts before, during, and after RT, and derived blood index ratios such as the neutrophil-to-lymphocyte ratio (NLR), platelet-to-lymphocyte ratio (PLR), and systemic immune-inflammation index (SII). The datasets were analyzed using the Spearman rank correlation test, Kruskal-Wallis rank sum test and logistic regression.

Results: Among the selected blood indices, the delta-NLR/PLR/Sll correlated with different irradiated organs, and the mean ranks of these three indices were the lowest in the brain-irradiated group during immunotherapy. Additionally, adjunct first-line immunotherapy with RT demonstrated a significant improvement compared to second- or third-line therapy and subsequent therapies.

Conclusion: Our findings suggest that compared to other organs, the strongest immune activation effect occurs with brain RT, and ES-SCLC patients who received radioimmunotherapy (RIT) earlier achieved higher OS rates.

背景:鉴于广泛期小细胞肺癌(ES-SCLC)患者放射治疗(RT)联合免疫治疗的资料有限,本研究旨在确定放射免疫治疗在不同部位的免疫激活作用以及不同治疗阶段的生存结局。方法:回顾性分析45例确诊为ES-SCLC的患者。我们收集了患者的总生存期(OS),记录了放疗前、放疗期间和放疗后的血细胞计数,并得出了中性粒细胞与淋巴细胞比值(NLR)、血小板与淋巴细胞比值(PLR)和全身免疫炎症指数(SII)等血液指标比率。采用Spearman秩相关检验、Kruskal-Wallis秩和检验和logistic回归对数据集进行分析。结果:所选血液指标中,delta-NLR/PLR/Sll与不同受照器官相关,且免疫治疗期间脑受照组这三项指标的平均排名最低。此外,与二线或三线治疗和后续治疗相比,辅助一线免疫治疗与RT显示显着改善。结论:我们的研究结果表明,与其他器官相比,最强的免疫激活效应发生在脑RT,早期接受放射免疫治疗(RIT)的ES-SCLC患者获得更高的OS率。
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引用次数: 0
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