首页 > 最新文献

Blood Cells Molecules and Diseases最新文献

英文 中文
Up-regulation of microRNA 101-3p during erythropoiesis in β-thalassemia/HbE β-地中海贫血/HbE红细胞生成过程中microRNA 101-3p的上调
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-07-17 DOI: 10.1016/j.bcmd.2023.102781
Phatchariya Phannasil , Chanyanat Sukhuma , Donny Nauphar , Khanita Nuamsee , Saovaros Svasti

Ineffective erythropoiesis is the main cause of anemia in β-thalassemia. The crucial hallmark of ineffective erythropoiesis is the high proliferation of erythroblast. microRNA (miR/miRNA) involves several biological processes, including cell proliferation and erythropoiesis. miR-101 was widely studied and associated with proliferation in several types of cancer. However, the miR-101-3p has not been studied in β-thalassemia/HbE. Therefore, this study aims to investigate the expression of miR-101-3p during erythropoiesis in β-thalassemia/HbE. The results showed that miR-101-3p was upregulated in the erythroblast of β-thalassemia/HbE patients on day 7, indicating that miR-101-3p may be involved with high proliferation in β-thalassemia/HbE. Therefore, the mRNA targets of miR-101-3p including Rac1, SUB1, TET2, and TRIM44 were investigated to determine the mechanisms involved with high proliferation of β-thalassemia/HbE erythroblasts. Rac1 expression was significantly reduced at day 11 in severe β-thalassemia/HbE compared to normal controls and mild β-thalassemia/HbE. SUB1 gene expression was significantly lower in severe β-thalassemia/HbE compared to normal controls at day 9 of culture. For TET2 and TRIM44 expression, a significant difference was not observed among normal and β-thalassemia/HbE. However, the high expression of miR-101-3p at day 7 and these target genes was not correlated, suggesting that this miRNA may regulate ineffective erythropoiesis in β-thalassemia/HbE via other target genes.

无效的红细胞生成是β地中海贫血的主要原因。红细胞生成无效的关键标志是成红细胞的高度增殖。微小RNA(miR/miRNA)涉及多种生物学过程,包括细胞增殖和红细胞生成。miR-101在多种类型的癌症中被广泛研究并与增殖相关。然而,miR-101-3p尚未在β-地中海贫血/HbE中进行研究。因此,本研究旨在研究miR-101-3p在β-地中海贫血/HbE红细胞生成过程中的表达。结果显示,miR-101-3p在第7天的β-地中海贫血/HbE患者的成红细胞中上调,表明miR-101-3p可能与β-地中海贫血症/HbE的高增殖有关。因此,研究了miR-101-3p的mRNA靶点,包括Rac1、SUB1、TET2和TRIM44,以确定β-地中海贫血/HbE成红细胞高增殖的机制。与正常对照组和轻度β地中海贫血/HbE相比,严重β地中海贫血/HbE的Rac1表达在第11天显著降低。在培养的第9天,与正常对照组相比,严重β-地中海贫血/HbE患者的SUB1基因表达显著降低。对于TET2和TRIM44的表达,在正常和β-地中海贫血/HbE之间没有观察到显著差异。然而,miR-101-3p在第7天的高表达与这些靶基因并不相关,这表明该miRNA可能通过其他靶基因调节β-地中海贫血/HbE中无效的红细胞生成。
{"title":"Up-regulation of microRNA 101-3p during erythropoiesis in β-thalassemia/HbE","authors":"Phatchariya Phannasil ,&nbsp;Chanyanat Sukhuma ,&nbsp;Donny Nauphar ,&nbsp;Khanita Nuamsee ,&nbsp;Saovaros Svasti","doi":"10.1016/j.bcmd.2023.102781","DOIUrl":"10.1016/j.bcmd.2023.102781","url":null,"abstract":"<div><p><span><span>Ineffective erythropoiesis is the main cause of anemia in β-thalassemia. The crucial hallmark of ineffective erythropoiesis is the high proliferation of </span>erythroblast<span>. microRNA<span> (miR/miRNA) involves several biological processes<span>, including cell proliferation and erythropoiesis. miR-101 was widely studied and associated with proliferation in several types of cancer. However, the miR-101-3p has not been studied in β-thalassemia/HbE. Therefore, this study aims to investigate the expression of miR-101-3p during erythropoiesis in β-thalassemia/HbE. The results showed that miR-101-3p was upregulated in the erythroblast of β-thalassemia/HbE patients on day 7, indicating that miR-101-3p may be involved with high proliferation in β-thalassemia/HbE. Therefore, the mRNA targets of miR-101-3p including </span></span></span></span><em>Rac1</em>, <span><em>SUB1</em></span>, <em>TET2</em>, and <em>TRIM44</em> were investigated to determine the mechanisms involved with high proliferation of β-thalassemia/HbE erythroblasts. <em>Rac1</em> expression was significantly reduced at day 11 in severe β-thalassemia/HbE compared to normal controls and mild β-thalassemia/HbE. <em>SUB1</em> gene expression was significantly lower in severe β-thalassemia/HbE compared to normal controls at day 9 of culture. For TET2 and TRIM44 expression, a significant difference was not observed among normal and β-thalassemia/HbE. However, the high expression of miR-101-3p at day 7 and these target genes was not correlated, suggesting that this miRNA may regulate ineffective erythropoiesis in β-thalassemia/HbE via other target genes.</p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"103 ","pages":"Article 102781"},"PeriodicalIF":2.3,"publicationDate":"2023-07-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10049554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A stepwise diagnostic approach for undiagnosed Anemia in children: A model for low-middle income country 儿童未确诊贫血的逐步诊断方法:中低收入国家的一个模型
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-07-16 DOI: 10.1016/j.bcmd.2023.102779
Nihal Hussien Aly , Mohsen Saleh Elalfy , Safinaz Adel Elhabashy , Nadia Mohamed Mowafy , Roberta Russo , Immacolata Andolfo , Achille Iolascon , Iman Ahmed Ragab
<div><h3>Background</h3><p>Reaching a precise diagnosis in rare inherited anemia is extremely difficult and challenging, especially in areas with limited use of genetic<span> studies, which makes undiagnosed anemia a unique clinical entity in tertiary hematology centers. In this study, we aim at plotting a stepwise diagnostic approach in children with undiagnosed anemia while identifying indications for genetic testing.</span></p></div><div><h3>Patients and methods</h3><p>A one-year cross-sectional study involved 44 children and adolescents with undiagnosed anemia after undergoing an initial routine panel of investigations. They were classified based on mean corpuscular volume (MCV) into 3 groups: microcytic (<em>n</em> = 19), normocytic (<em>n</em> = 14) and macrocytic (<em>n</em> = 11). An algorithm that included four levels of investigations was devised for each category.</p></div><div><h3>Results</h3><p><span><span><span>After applying a systematic diagnostic approach, 33 patients (75 %) were diagnosed of whom 7 (15 %) had combined diagnoses, while 11 (25 %) patients remained undiagnosed. Based on the first, second, third and fourth levels of investigations, patients were diagnosed, respectively, as follows: of the 11 patients, 7 were microcytic, 3 normocytic and 1 macrocytic; of the 7 patients, 2 were microcytic, 2 normocytic, and 3 macrocytic; of 10 patients, 5 were microcytic, 4 normocytic and 1 macrocytic; finally, of the 16 patients, 8 were microcytic, 6 normocytic and 2 macrocytic. Numbers recorded appear higher than the actual number of the patients because some of them were diagnosed by more than one level of investigation. The diagnoses obtained in the microcytic group showed hemoglobinopathies, iron refractory </span>iron deficiency anemia (IRIDA), membrane defects, </span>sideroblastic anemia<span><span>, hypo-transferrinemia, a combined diagnosis of sickle cell trait and pyropoikilocytosis. The diagnoses also showed a combined diagnosis of hereditary </span>spherocytosis<span><span> (HS) and alpha thalassemia<span> minor, and a combined diagnosis of iron deficiency anemia and beta thalassemia minor, while 15 % remained undiagnosed. In the normocytic group, the diagnosis revealed </span></span>autosomal recessive<span><span> (AR) HS, vitamin B12 deficiency, </span>pyruvate kinase deficiency (PKD), congenital dyserythropoietic anemia (CDA) type I, </span></span></span></span>Diamond Blackfan anemia<span><span> and beta thalassemia major. In addition, it showed a combined diagnosis of AR HS and CDA type II<span>, a combined diagnosis of AR HS and PKD, and a combined diagnosis of dehydrated stomatocytosis (DHS) and G6PD carrier, meanwhile 20 % remained undiagnosed. Finally, the macrocytic group was diagnosed by vitamin B12 deficiency, sideroblastic anemia, PKD, a combined diagnosis of PKD and </span></span>G6PD deficiency carrier, while 45 % remained undiagnosed.</span></p></div><div><h3>Conclusion</h3><p>Conducting a stepwise approac
背景对罕见遗传性贫血进行精确诊断是极其困难和具有挑战性的,尤其是在基因研究使用有限的地区,这使得未诊断的贫血成为三级血液学中心的独特临床实体。在这项研究中,我们旨在为未诊断的贫血儿童制定一种逐步诊断方法,同时确定基因检测的适应症。患者和方法一项为期一年的横断面研究涉及44名儿童和青少年,他们在接受了初步的常规调查后患有未诊断的贫血。根据平均红细胞体积(MCV)将其分为3组:小细胞(n=19)、正常细胞(n=14)和大细胞(n=11)。为每个类别设计了一个包括四个层次调查的算法。结果应用系统诊断方法后,33例(75%)患者被确诊,其中7例(15%)合并诊断,11例(25%)患者仍未确诊。根据第一、第二、第三和第四级调查,患者分别被诊断为:11名患者中,7名为小细胞,3名为正常细胞,1名为大细胞;7例患者中,2例为小细胞型,2例正常细胞型,3例大细胞型;10例患者中,5例为小细胞型,4例为正常细胞型,1例为大细胞型;最后,16例患者中,8例为小细胞型,6例为正常细胞型,2例为大细胞型。记录的人数似乎高于实际患者人数,因为其中一些患者是通过多个级别的调查诊断的。在微细胞组中获得的诊断显示血红蛋白病、铁难治性缺铁性贫血(IRIDA)、膜缺陷、铁母细胞性贫血、低转铁蛋白血症、镰状细胞特征和焦红细胞增多症的联合诊断。诊断结果还显示遗传性球细胞增多症(HS)和轻度α地中海贫血的联合诊断,以及缺铁性贫血和轻度β地中海贫血的综合诊断,而15%的患者仍未确诊。在正常细胞组中,诊断显示常染色体隐性遗传(AR)HS、维生素B12缺乏症、丙酮酸激酶缺乏症、先天性红细胞生成障碍性贫血(CDA)I型、Diamond Blackfan贫血和β地中海贫血。此外,它显示出AR HS和CDA II型的联合诊断,AR HS和PKD的联合诊断以及脱水性口腔细胞增多症(DHS)和G6PD携带者的联合诊断。最后,大细胞组被诊断为维生素B12缺乏、铁母细胞性贫血、PKD,这是PKD和G6PD缺乏携带者的联合诊断,而45%的患者仍未确诊。结论对不同程度的调查进行逐步的方法可能有助于在不必进行不必要的调查的情况下诊断难治性贫血。综合诊断是未确诊贫血的重要原因,尤其是在血亲频率高的国家。剩下的25%的患者仍然没有得到诊断,需要进行更复杂的调查。
{"title":"A stepwise diagnostic approach for undiagnosed Anemia in children: A model for low-middle income country","authors":"Nihal Hussien Aly ,&nbsp;Mohsen Saleh Elalfy ,&nbsp;Safinaz Adel Elhabashy ,&nbsp;Nadia Mohamed Mowafy ,&nbsp;Roberta Russo ,&nbsp;Immacolata Andolfo ,&nbsp;Achille Iolascon ,&nbsp;Iman Ahmed Ragab","doi":"10.1016/j.bcmd.2023.102779","DOIUrl":"10.1016/j.bcmd.2023.102779","url":null,"abstract":"&lt;div&gt;&lt;h3&gt;Background&lt;/h3&gt;&lt;p&gt;Reaching a precise diagnosis in rare inherited anemia is extremely difficult and challenging, especially in areas with limited use of genetic&lt;span&gt; studies, which makes undiagnosed anemia a unique clinical entity in tertiary hematology centers. In this study, we aim at plotting a stepwise diagnostic approach in children with undiagnosed anemia while identifying indications for genetic testing.&lt;/span&gt;&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Patients and methods&lt;/h3&gt;&lt;p&gt;A one-year cross-sectional study involved 44 children and adolescents with undiagnosed anemia after undergoing an initial routine panel of investigations. They were classified based on mean corpuscular volume (MCV) into 3 groups: microcytic (&lt;em&gt;n&lt;/em&gt; = 19), normocytic (&lt;em&gt;n&lt;/em&gt; = 14) and macrocytic (&lt;em&gt;n&lt;/em&gt; = 11). An algorithm that included four levels of investigations was devised for each category.&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Results&lt;/h3&gt;&lt;p&gt;&lt;span&gt;&lt;span&gt;&lt;span&gt;After applying a systematic diagnostic approach, 33 patients (75 %) were diagnosed of whom 7 (15 %) had combined diagnoses, while 11 (25 %) patients remained undiagnosed. Based on the first, second, third and fourth levels of investigations, patients were diagnosed, respectively, as follows: of the 11 patients, 7 were microcytic, 3 normocytic and 1 macrocytic; of the 7 patients, 2 were microcytic, 2 normocytic, and 3 macrocytic; of 10 patients, 5 were microcytic, 4 normocytic and 1 macrocytic; finally, of the 16 patients, 8 were microcytic, 6 normocytic and 2 macrocytic. Numbers recorded appear higher than the actual number of the patients because some of them were diagnosed by more than one level of investigation. The diagnoses obtained in the microcytic group showed hemoglobinopathies, iron refractory &lt;/span&gt;iron deficiency anemia (IRIDA), membrane defects, &lt;/span&gt;sideroblastic anemia&lt;span&gt;&lt;span&gt;, hypo-transferrinemia, a combined diagnosis of sickle cell trait and pyropoikilocytosis. The diagnoses also showed a combined diagnosis of hereditary &lt;/span&gt;spherocytosis&lt;span&gt;&lt;span&gt; (HS) and alpha thalassemia&lt;span&gt; minor, and a combined diagnosis of iron deficiency anemia and beta thalassemia minor, while 15 % remained undiagnosed. In the normocytic group, the diagnosis revealed &lt;/span&gt;&lt;/span&gt;autosomal recessive&lt;span&gt;&lt;span&gt; (AR) HS, vitamin B12 deficiency, &lt;/span&gt;pyruvate kinase deficiency (PKD), congenital dyserythropoietic anemia (CDA) type I, &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;Diamond Blackfan anemia&lt;span&gt;&lt;span&gt; and beta thalassemia major. In addition, it showed a combined diagnosis of AR HS and CDA type II&lt;span&gt;, a combined diagnosis of AR HS and PKD, and a combined diagnosis of dehydrated stomatocytosis (DHS) and G6PD carrier, meanwhile 20 % remained undiagnosed. Finally, the macrocytic group was diagnosed by vitamin B12 deficiency, sideroblastic anemia, PKD, a combined diagnosis of PKD and &lt;/span&gt;&lt;/span&gt;G6PD deficiency carrier, while 45 % remained undiagnosed.&lt;/span&gt;&lt;/p&gt;&lt;/div&gt;&lt;div&gt;&lt;h3&gt;Conclusion&lt;/h3&gt;&lt;p&gt;Conducting a stepwise approac","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"103 ","pages":"Article 102779"},"PeriodicalIF":2.3,"publicationDate":"2023-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9996941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
γ′ fibrinogen levels as a biomarker of COVID-19 respiratory disease severity γ’纤维蛋白原水平作为COVID-19呼吸道疾病严重程度的生物标志物
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-07-01 DOI: 10.1016/j.bcmd.2023.102746
Lucy Z. Kornblith , Bindhya Sadhanandhan , Sreepriya Arun , Rebecca Long , Alicia J. Johnson , Jamie Noll , C.N. Ramchand , John K. Olynyk , David H. Farrell

Coronavirus disease 2019 (COVID-19) is characterized by a pro-inflammatory state associated with organ failure, thrombosis, and death. We investigated a novel inflammatory biomarker, γ′ fibrinogen (GPF), in 103 hospitalized patients with COVID-19 and 19 healthy controls. We found significant associations between GPF levels and the severity of COVID-19 as judged by blood oxygen saturation (SpO2). The mean level of GPF in the patients with COVID-19 was significantly higher than in controls (69.8 (95 % CI 64.8–74.8) mg/dL compared with 36.9 (95 % CI 31.4–42.4) mg/dL, p < 0.0001), whereas C-reactive protein (CRP), lactate dehydrogenase (LDH), and total fibrinogen levels were not significantly different between groups. Mean GPF levels were significantly highest in patients with severe COVID-19 (SpO2 ≤ 93 %, GPF 75.2 (95 % CI 68.7–81.8) mg/dL), compared to mild/moderate COVID-19 (SpO2 > 93 %, GPF 62.5 (95 % CI 55.0–70.0) mg/dL, p = 0.01, AUC of 0.68, 95 % CI 0.57–0.78; Youden's index cutpoint 62.9 mg/dL, sensitivity 0.64, specificity 0.63). In contrast, CRP, interleukin-6, ferritin, LDH, D-dimers, and total fibrinogen had weaker associations with COVID-19 disease severity (all ROC curves with lower AUCs). Thus, GPF may be a useful inflammatory marker of COVID-19 respiratory disease severity.

2019冠状病毒病(新冠肺炎)的特征是与器官衰竭、血栓形成和死亡相关的促炎状态。我们在103名新冠肺炎住院患者和19名健康对照中研究了一种新的炎症生物标志物γ′纤维蛋白原(GPF)。我们发现,根据血氧饱和度(SpO2)判断,GPF水平与新冠肺炎的严重程度之间存在显著关联。新冠肺炎患者的GPF平均水平显著高于对照组(69.8(95%CI 64.8–74.8)mg/dL,而36.9(95%CI 31.4–42.4)mg/dL,p<;0.0001),而C反应蛋白(CRP)、乳酸脱氢酶(LDH)和总纤维蛋白原水平在各组之间没有显著差异。重度新冠肺炎患者的平均GPF水平显著最高(SpO2≤93%,GPF 75.2(95%CI 68.7–81.8)mg/dL),与轻度/中度新冠肺炎患者相比(SpO2>93%,GPF62.5(95%CI 55.0–70.0)mg/dL,p=0.01,AUC为0.68,95%CI 0.57–0.78;尤登指数切点62.9 mg/dL,敏感性0.64,特异性0.63)。相反,CRP、白细胞介素-6、铁蛋白、LDH、D-二聚体和总纤维蛋白原与新冠肺炎疾病严重程度的相关性较弱(所有ROC曲线的AUC均较低)。因此,GPF可能是新冠肺炎呼吸道疾病严重程度的有用炎症标志物。
{"title":"γ′ fibrinogen levels as a biomarker of COVID-19 respiratory disease severity","authors":"Lucy Z. Kornblith ,&nbsp;Bindhya Sadhanandhan ,&nbsp;Sreepriya Arun ,&nbsp;Rebecca Long ,&nbsp;Alicia J. Johnson ,&nbsp;Jamie Noll ,&nbsp;C.N. Ramchand ,&nbsp;John K. Olynyk ,&nbsp;David H. Farrell","doi":"10.1016/j.bcmd.2023.102746","DOIUrl":"10.1016/j.bcmd.2023.102746","url":null,"abstract":"<div><p>Coronavirus disease 2019 (COVID-19) is characterized by a pro-inflammatory state associated with organ failure, thrombosis, and death. We investigated a novel inflammatory biomarker, γ′ fibrinogen (GPF), in 103 hospitalized patients with COVID-19 and 19 healthy controls. We found significant associations between GPF levels and the severity of COVID-19 as judged by blood oxygen saturation (SpO<sub>2</sub>). The mean level of GPF in the patients with COVID-19 was significantly higher than in controls (69.8 (95 % CI 64.8–74.8) mg/dL compared with 36.9 (95 % CI 31.4–42.4) mg/dL, p &lt; 0.0001), whereas C-reactive protein (CRP), lactate dehydrogenase (LDH), and total fibrinogen levels were not significantly different between groups. Mean GPF levels were significantly highest in patients with severe COVID-19 (SpO<sub>2</sub> ≤ 93 %, GPF 75.2 (95 % CI 68.7–81.8) mg/dL), compared to mild/moderate COVID-19 (SpO<sub>2</sub> &gt; 93 %, GPF 62.5 (95 % CI 55.0–70.0) mg/dL, p = 0.01, AUC of 0.68, 95 % CI 0.57–0.78; Youden's index cutpoint 62.9 mg/dL, sensitivity 0.64, specificity 0.63). In contrast, CRP, interleukin-6, ferritin, LDH, D-dimers, and total fibrinogen had weaker associations with COVID-19 disease severity (all ROC curves with lower AUCs). Thus, GPF may be a useful inflammatory marker of COVID-19 respiratory disease severity.</p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"101 ","pages":"Article 102746"},"PeriodicalIF":2.3,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10147444/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9670452","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Corrigendum to “Impact of maternal iron deficiency anemia on fetal iron status and placental iron transporters in human pregnancy” [Blood Cells Mol. Dis. 99 (2023) 102727] “孕妇缺铁性贫血对胎儿铁状态和胎盘铁转运蛋白的影响”的更正[血细胞Mol. Dis. 99 (2023) 102727]
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-07-01 DOI: 10.1016/j.bcmd.2023.102744
Sreenithi Santhakumar , Rekha Athiyarath , Anne George Cherian , Vinod Joseph Abraham , Biju George , Paweł Lipiński , Eunice Sindhuvi Edison
{"title":"Corrigendum to “Impact of maternal iron deficiency anemia on fetal iron status and placental iron transporters in human pregnancy” [Blood Cells Mol. Dis. 99 (2023) 102727]","authors":"Sreenithi Santhakumar ,&nbsp;Rekha Athiyarath ,&nbsp;Anne George Cherian ,&nbsp;Vinod Joseph Abraham ,&nbsp;Biju George ,&nbsp;Paweł Lipiński ,&nbsp;Eunice Sindhuvi Edison","doi":"10.1016/j.bcmd.2023.102744","DOIUrl":"10.1016/j.bcmd.2023.102744","url":null,"abstract":"","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"101 ","pages":"Article 102744"},"PeriodicalIF":2.3,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9457663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologies 转录因子和染色质修饰的高通量分析方法:低输入、单细胞和空间基因组技术
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-07-01 DOI: 10.1016/j.bcmd.2023.102745
Mohammad Salma , Charlotte Andrieu-Soler , Virginie Deleuze , Eric Soler

Genome-wide analysis of transcription factors and epigenomic features is instrumental to shed light on DNA-templated regulatory processes such as transcription, cellular differentiation or to monitor cellular responses to environmental cues. Two decades of technological developments have led to a rich set of approaches progressively pushing the limits of epigenetic profiling towards single cells. More recently, disruptive technologies using innovative biochemistry came into play. Assays such as CUT&RUN, CUT&Tag and variations thereof show considerable potential to survey multiple TFs or histone modifications in parallel from a single experiment and in native conditions. These are in the path to become the dominant assays for genome-wide analysis of TFs and chromatin modifications in bulk, single-cell, and spatial genomic applications. The principles together with pros and cons are discussed.

转录因子和表观基因组特征的全基因组分析有助于阐明DNA模板调控过程,如转录、细胞分化或监测细胞对环境线索的反应。二十年的技术发展导致了一套丰富的方法,逐渐将表观遗传学分析的极限推向单细胞。最近,利用创新生物化学的颠覆性技术开始发挥作用。诸如CUT&;RUN,CUT&;标签及其变体显示出从单个实验和在天然条件下并行调查多种TF或组蛋白修饰的相当大的潜力。这些方法正在成为全基因组分析TF和染色质修饰的主要方法,用于批量、单细胞和空间基因组应用。讨论了这些原则及其利弊。
{"title":"High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologies","authors":"Mohammad Salma ,&nbsp;Charlotte Andrieu-Soler ,&nbsp;Virginie Deleuze ,&nbsp;Eric Soler","doi":"10.1016/j.bcmd.2023.102745","DOIUrl":"10.1016/j.bcmd.2023.102745","url":null,"abstract":"<div><p><span>Genome-wide analysis of transcription factors and epigenomic<span><span> features is instrumental to shed light on DNA-templated regulatory processes such as transcription, cellular differentiation or to monitor cellular responses to environmental cues. Two decades of technological developments have led to a rich set of approaches progressively pushing the limits of epigenetic profiling towards single cells. More recently, disruptive technologies using innovative </span>biochemistry came into play. Assays such as CUT&amp;RUN, CUT&amp;Tag and variations thereof show considerable potential to survey multiple TFs or </span></span>histone modifications in parallel from a single experiment and in native conditions. These are in the path to become the dominant assays for genome-wide analysis of TFs and chromatin modifications in bulk, single-cell, and spatial genomic applications. The principles together with pros and cons are discussed.</p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"101 ","pages":"Article 102745"},"PeriodicalIF":2.3,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10022777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Acquired elliptocytosis in chronic myeloid neoplasms: An enigmatic relationship to acquired red cell membrane protein and genetic abnormalities 慢性髓系肿瘤的获得性椭圆细胞增多:与获得性红细胞膜蛋白和遗传异常的神秘关系
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-06-22 DOI: 10.1016/j.bcmd.2023.102778
Marshall A. Lichtman , Ronald Sham

Nineteen reports of 41 cases of acquired red cell elliptocytosis associated with a chronic myeloid neoplasm are described. Although the majority of cases have an abnormality of the long arm of chromosome 20, del(q20), several cases do not. Moreover, in one case a specific qualitative abnormality of red cell protein band 4.1(4.1R) was reported; however, several subsequent cases could find no abnormality of a red cell membrane protein or found a different abnormality, usually quantitative. Thus, this striking red cell phenotypic feature, acquired elliptocytosis, seen in myelodysplastic syndrome and other chronic myeloproliferative diseases, closely simulating the red cell phenotype of hereditary elliptocytosis, has an unexplained genetic basis, presumably as the result of an acquired mutation(s) in some chronic myeloid neoplasms.

本文报告了41例与慢性髓系肿瘤相关的获得性红细胞椭圆细胞增多症的19例报告。尽管大多数病例有20号染色体长臂del(q20)异常,但也有少数病例没有。此外,在一个病例中,报告了红细胞蛋白带4.1(4.1R)的特异性定性异常;然而,随后的几个病例可能没有发现红细胞膜蛋白的异常,或者发现了不同的异常,通常是定量的。因此,在骨髓增生异常综合征和其他慢性骨髓增生性疾病中观察到的这种引人注目的红细胞表型特征,即获得性椭圆细胞增多症,密切模拟遗传性椭圆细胞增生症的红细胞表现型,具有无法解释的遗传基础,可能是某些慢性骨髓肿瘤中获得性突变的结果。
{"title":"Acquired elliptocytosis in chronic myeloid neoplasms: An enigmatic relationship to acquired red cell membrane protein and genetic abnormalities","authors":"Marshall A. Lichtman ,&nbsp;Ronald Sham","doi":"10.1016/j.bcmd.2023.102778","DOIUrl":"10.1016/j.bcmd.2023.102778","url":null,"abstract":"<div><p>Nineteen reports of 41 cases of acquired red cell elliptocytosis<span> associated with a chronic myeloid neoplasm are described. Although the majority of cases have an abnormality of the long arm of chromosome 20<span><span>, del(q20), several cases do not. Moreover, in one case a specific qualitative abnormality of red cell protein band 4.1(4.1R) was reported; however, several subsequent cases could find no abnormality of a red cell membrane protein or found a different abnormality, usually quantitative. Thus, this striking red cell phenotypic feature, acquired elliptocytosis, seen in myelodysplastic syndrome and other chronic </span>myeloproliferative diseases<span>, closely simulating the red cell phenotype of hereditary elliptocytosis, has an unexplained genetic basis, presumably as the result of an acquired mutation(s) in some chronic myeloid neoplasms.</span></span></span></p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"103 ","pages":"Article 102778"},"PeriodicalIF":2.3,"publicationDate":"2023-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9986322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Hypoferremia of inflammation: Innate host defense against infections 炎症性低铁血症:宿主对感染的先天防御
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-06-21 DOI: 10.1016/j.bcmd.2023.102777
Tomas Ganz , Elizabeta Nemeth

Iron is an essential nutrient for microbes, plants and animals. Multicellular organisms have evolved multiple strategies to control invading microbes by restricting microbial access to iron. Hypoferremia of inflammation is a rapidly-acting organismal response that prevents the formation of iron species that would be readily accessible to microbes. This review takes an evolutionary perspective to explore the mechanisms and host defense function of hypoferremia of inflammation and its clinical implications.

铁是微生物、植物和动物必需的营养物质。多细胞生物已经进化出多种策略,通过限制微生物获得铁来控制入侵微生物。炎症的低铁血症是一种快速作用的机体反应,它可以阻止微生物容易接近的铁物质的形成。本文从进化的角度探讨炎症性低铁血症的机制、宿主防御功能及其临床意义。
{"title":"Hypoferremia of inflammation: Innate host defense against infections","authors":"Tomas Ganz ,&nbsp;Elizabeta Nemeth","doi":"10.1016/j.bcmd.2023.102777","DOIUrl":"10.1016/j.bcmd.2023.102777","url":null,"abstract":"<div><p>Iron is an essential nutrient for microbes, plants and animals. Multicellular organisms have evolved multiple strategies to control invading microbes by restricting microbial access to iron. Hypoferremia of inflammation is a rapidly-acting organismal response that prevents the formation of iron species that would be readily accessible to microbes. This review takes an evolutionary perspective to explore the mechanisms and host defense function of hypoferremia of inflammation and its clinical implications.</p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"104 ","pages":"Article 102777"},"PeriodicalIF":2.3,"publicationDate":"2023-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1079979623000542/pdfft?md5=f31ed25e8f74223a04fcebc5d04a9f44&pid=1-s2.0-S1079979623000542-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10086614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Mouse models of sickle cell disease: Imperfect and yet very informative 镰状细胞病的小鼠模型:不完善,但信息丰富
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-06-17 DOI: 10.1016/j.bcmd.2023.102776
Sayuri Kamimura , Meghann Smith , Sebastian Vogel , Luis E.F. Almeida , Swee Lay Thein , Zenaide M.N. Quezado

The root cause of sickle cell disease (SCD) has been known for nearly a century, however, few therapies to treat the disease are available. Over several decades of work, with advances in gene editing technology and after several iterations of mice with differing genotype/phenotype relationships, researchers have developed humanized SCD mouse models. However, while a large body of preclinical studies has led to huge gains in basic science knowledge about SCD in mice, this knowledge has not led to the development of effective therapies to treat SCD-related complications in humans, thus leading to frustration with the paucity of translational progress in the SCD field. The use of mouse models to study human diseases is based on the genetic and phenotypic similarities between mouse and humans (face validity). The Berkeley and Townes SCD mice express only human globin chains and no mouse hemoglobin. With this genetic composition, these models present many phenotypic similarities, but also significant discrepancies that should be considered when interpreting preclinical studies results. Reviewing genetic and phenotypic similarities and discrepancies and examining studies that have translated to humans and those that have not, offer a better perspective of construct, face, and predictive validities of humanized SCD mouse models.

镰状细胞病(SCD)的根本原因已经知道了近一个世纪,然而,很少有治疗这种疾病的方法。经过几十年的工作,随着基因编辑技术的进步,经过对具有不同基因型/表型关系的小鼠的几次迭代,研究人员开发了人源化SCD小鼠模型。然而,尽管大量的临床前研究已经使小鼠SCD的基础科学知识取得了巨大的进展,但这些知识并没有导致治疗人类SCD相关并发症的有效疗法的发展,从而导致SCD领域缺乏转化进展的挫折。使用小鼠模型来研究人类疾病是基于小鼠和人类之间的遗传和表型相似性(面部效度)。伯克利和汤斯SCD小鼠只表达人类珠蛋白链,不表达小鼠血红蛋白。有了这种遗传组成,这些模型呈现出许多表型相似性,但在解释临床前研究结果时也应考虑到显著的差异。回顾遗传和表型的相似性和差异,并检查已转化为人类和未转化为人类的研究,为人源化SCD小鼠模型的构建、外观和预测有效性提供了更好的视角。
{"title":"Mouse models of sickle cell disease: Imperfect and yet very informative","authors":"Sayuri Kamimura ,&nbsp;Meghann Smith ,&nbsp;Sebastian Vogel ,&nbsp;Luis E.F. Almeida ,&nbsp;Swee Lay Thein ,&nbsp;Zenaide M.N. Quezado","doi":"10.1016/j.bcmd.2023.102776","DOIUrl":"10.1016/j.bcmd.2023.102776","url":null,"abstract":"<div><p>The root cause of sickle cell disease<span> (SCD) has been known for nearly a century, however, few therapies to treat the disease are available. Over several decades of work, with advances in gene editing technology and after several iterations of mice with differing genotype/phenotype relationships, researchers have developed humanized SCD mouse models. However, while a large body of preclinical studies<span> has led to huge gains in basic science knowledge about SCD in mice, this knowledge has not led to the development of effective therapies to treat SCD-related complications in humans, thus leading to frustration with the paucity of translational progress in the SCD field. The use of mouse models to study human diseases is based on the genetic<span> and phenotypic similarities between mouse and humans (face validity). The Berkeley and Townes SCD mice express only human globin chains and no mouse hemoglobin. With this genetic composition, these models present many phenotypic similarities, but also significant discrepancies that should be considered when interpreting preclinical studies results. Reviewing genetic and phenotypic similarities and discrepancies and examining studies that have translated to humans and those that have not, offer a better perspective of construct, face, and predictive validities of humanized SCD mouse models.</span></span></span></p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"104 ","pages":"Article 102776"},"PeriodicalIF":2.3,"publicationDate":"2023-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10086615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Essential genetic modifiers and their measurable impact in a community-recruited population analysis for non-severe hemoglobin E/β-thalassemia prenatal genetic counseling 非严重血红蛋白E/β-地中海贫血产前遗传咨询的社区招募人群分析中的基本遗传修饰及其可衡量的影响
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-06-15 DOI: 10.1016/j.bcmd.2023.102765
Peerapon Wong , Thirabhat Chitsobhak , Suporn Jittasathian , Chonnigarn Sirichantharawat , Naritsara Cherdchoo , Weerapong Prangcharoen , Patcharanapa Jongautchariyakul , Katechan Jampachaisri , Akamon Tapprom , Rawisut Deoisares , Piyatida Chumnumsiriwath

The study aimed to identify essential phenotype-modulating factors among the pre-existence of several important ones and clarify their measurable impact on the clinical severity of hemoglobin (Hb) E/β-thalassemia in a community-recruited population analysis. This prospective study was designed to compare modifiers between community- (less or no symptoms) and hospital-recruited individuals with Hb E/β-thalassemia. The formerly included couples previously assessed for prenatal thalassemia at-risk status at 42 community and 7 referral hospitals in Thailand through on-site investigations between June 2020 and December 2021. The control included Hb E/β-thalassemia patients undergoing transfusions. The Mahidol score classified disease severity. Beta-globin, α0-thalassemia (-SEA, -THAI), α+-thalassemia (-α3.7, -α4.2), Hb Constant Spring (αCS) alleles, rs766432 in BCL11A, rs9399137 in HBS1L-MYB, and rs7482144-XmnI were evaluated. Modifiers were compared between 102 community- and 104 hospital-recruited cases. Alleles of β+, -SEA, -α3.7, αCS, and a minor allele of rs9399137 were prevalent in the community and mild severity groups (p < 0.05). Multiple linear regression analysis associated modulating alleles with −4.299 (-SEA), −3.654 (β+), −3.065 (rs9399137, C/C), −2.888 (αCS), −2.623 (‐α3.7), −2.361 (rs7482144, A/A), −1.258 (rs9399137, C/T), and −1.174 (rs7482144, A/G) severity score reductions (p < 0.05). Certain modifiers must be considered in routine prenatal genetic counseling for Hb E/β-thalassemia.

这项研究旨在通过社区招募的人群分析,在几个重要的表型调节因子中确定基本表型调节因子,并阐明它们对血红蛋白(Hb)E/β-地中海贫血临床严重程度的可测量影响。这项前瞻性研究旨在比较社区(症状较少或无症状)和医院招募的Hb E/β地中海贫血患者之间的修饰语。之前包括2020年6月至2021年12月期间在泰国42家社区和7家转诊医院通过现场调查评估产前地中海贫血风险状况的夫妇。对照组包括接受输血的Hb E/β地中海贫血患者。Mahidol评分对疾病的严重程度进行了分类。评估了β-珠蛋白、α0-地中海贫血(-SEA、-THAI)、α+-地中海贫血(-α3.7、-α4.2)、Hb恒定弹簧(αCS)等位基因、BCL11A中的rs766432、HBS1L-MYB中的rs9399137和rs7482144-XmnI。对102个社区和104个医院招募的病例进行了修改。β+、-SEA、-α3.7、αCS的等位基因和rs9399137的一个次要等位基因在社区和轻度严重组中普遍存在(p<;0.05)。多元线性回归分析将调节等位基因与−4.299(-SEA)、−3.654(β+)、−3.065(rs93991 37,C/C)、−2.888(αCS)、−2.623(-α3.7)、−2.361(rs7482144,a/a)、−1.258(rs9399 37,C/T)相关联,和−1.174(rs7482144,A/G)严重程度评分降低(p<;0.05)。在Hb E/β-地中海贫血的常规产前遗传咨询中必须考虑某些修饰因子。
{"title":"Essential genetic modifiers and their measurable impact in a community-recruited population analysis for non-severe hemoglobin E/β-thalassemia prenatal genetic counseling","authors":"Peerapon Wong ,&nbsp;Thirabhat Chitsobhak ,&nbsp;Suporn Jittasathian ,&nbsp;Chonnigarn Sirichantharawat ,&nbsp;Naritsara Cherdchoo ,&nbsp;Weerapong Prangcharoen ,&nbsp;Patcharanapa Jongautchariyakul ,&nbsp;Katechan Jampachaisri ,&nbsp;Akamon Tapprom ,&nbsp;Rawisut Deoisares ,&nbsp;Piyatida Chumnumsiriwath","doi":"10.1016/j.bcmd.2023.102765","DOIUrl":"10.1016/j.bcmd.2023.102765","url":null,"abstract":"<div><p><span>The study aimed to identify essential phenotype-modulating factors among the pre-existence of several important ones and clarify their measurable impact on the clinical severity of hemoglobin (Hb) E/β-thalassemia in a community-recruited population analysis. This prospective study was designed to compare modifiers between community- (less or no symptoms) and hospital-recruited individuals with Hb E/β-thalassemia. The formerly included couples previously assessed for prenatal thalassemia at-risk status at 42 community and 7 referral hospitals in Thailand through on-site investigations between June 2020 and December 2021. The control included Hb E/β-thalassemia patients undergoing transfusions. The Mahidol score classified disease severity. Beta-globin, α</span><sup>0</sup>-thalassemia (-<sup>SEA</sup>, -<sup>THAI</sup>), α<sup>+</sup>-thalassemia (-α<sup>3.7</sup>, -α<sup>4.2</sup>), Hb Constant Spring (α<sup>CS</sup>) alleles, rs766432 in <span><em>BCL11A</em></span>, rs9399137 in <em>HBS1L-MYB</em>, and rs7482144-<em>Xmn</em>I were evaluated. Modifiers were compared between 102 community- and 104 hospital-recruited cases. Alleles of β<sup>+</sup>, -<sup>SEA</sup>, -α<sup>3.7</sup>, α<sup>CS</sup>, and a minor allele of rs9399137 were prevalent in the community and mild severity groups (<em>p</em><span> &lt; 0.05). Multiple linear regression analysis associated modulating alleles with −4.299 (-</span><sup>SEA</sup>), −3.654 (β<sup>+</sup>), −3.065 (rs9399137, C/C), −2.888 (α<sup>CS</sup>), −2.623 (‐α<sup>3.7</sup>), −2.361 (rs7482144, A/A), −1.258 (rs9399137, C/T), and −1.174 (rs7482144, A/G) severity score reductions (<em>p</em><span> &lt; 0.05). Certain modifiers must be considered in routine prenatal genetic counseling for Hb E/β-thalassemia.</span></p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"103 ","pages":"Article 102765"},"PeriodicalIF":2.3,"publicationDate":"2023-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9997898","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular characterization of a novel 83.9-kb deletion of the α-globin upstream regulatory elements by long-read sequencing 一个新的83.9kbα-珠蛋白上游调控元件缺失的长链测序分子特征
IF 2.3 4区 医学 Q3 HEMATOLOGY Pub Date : 2023-06-10 DOI: 10.1016/j.bcmd.2023.102764
Jianjiang Feng , Aiping Mao , Ye Lu , Haihong Shi , Wanli Meng , Chen Liang

Inherited deletions of upstream regulatory elements of α-globin genes give rise to α-thalassemia, which is an autosomal recessive monogenic disease. However, conventional thalassemia target diagnosis often fails to identify these rare deletions. Here we reported a family with two previous pregnancies of Hb Bart's hydrops fetalis and was seeking for prenatal diagnosis during the third pregnancy. Both parents had low level of Hemoglobin A2 indicating α-thalassemia. Conventional Gap-PCR and PCR-reverse dot blot showed the father carried –SEA deletion but did not identify any variants in the mother. Multiplex ligation-dependent probe amplification identified a deletion containing two HS-40 probes but could not determine the exact region. Finally, a long-read sequencing (LRS)-based approach directly identified that the exact deletion region was chr16: 48,642-132,584, which was located in the α-globin upstream regulatory elements and named (αα)JM after the Jiangmen city. Gap-PCR and Sanger sequencing confirmed the breakpoint. Both the mother and fetus from the third pregnancy carried heterozygous (αα)JM, and the fetus was normally delivered at gestational age of 39 weeks. This study demonstrated that LRS technology had great advantages over conventional target diagnosis methods for identifying rare thalassemia variants and assisted better carrier screening and prenatal diagnosis of thalassemia.

α-珠蛋白基因上游调控元件的遗传缺失会导致α-地中海贫血,这是一种常染色体隐性单基因疾病。然而,传统的地中海贫血靶向诊断往往无法识别这些罕见的缺失。在此,我们报道了一个家庭,该家庭曾两次妊娠Hb Bart胎儿水肿,并在第三次妊娠期间寻求产前诊断。父母都有低水平的血红蛋白A2,表明α-地中海贫血。常规的Gap PCR和PCR反向点杂交显示父亲携带-SEA缺失,但在母亲中没有发现任何变体。多重连接依赖性探针扩增鉴定出含有两个HS-40探针的缺失,但不能确定确切的区域。最后,基于长读测序(LRS)的方法直接鉴定出确切的缺失区域为chr16:48642-132584,位于α-珠蛋白上游调控元件中,以江门市命名为(αα)JM。Gap PCR和Sanger测序证实了断点。第三次妊娠的母亲和胎儿都携带杂合子(αα)JM,胎儿在孕龄39周时正常分娩。这项研究表明,LRS技术在识别罕见的地中海贫血变体方面比传统的靶向诊断方法具有很大的优势,并有助于更好地进行地中海贫血的携带者筛查和产前诊断。
{"title":"Molecular characterization of a novel 83.9-kb deletion of the α-globin upstream regulatory elements by long-read sequencing","authors":"Jianjiang Feng ,&nbsp;Aiping Mao ,&nbsp;Ye Lu ,&nbsp;Haihong Shi ,&nbsp;Wanli Meng ,&nbsp;Chen Liang","doi":"10.1016/j.bcmd.2023.102764","DOIUrl":"10.1016/j.bcmd.2023.102764","url":null,"abstract":"<div><p><span><span>Inherited deletions of upstream regulatory elements of α-globin genes give rise to α-thalassemia, which is an autosomal recessive<span><span> monogenic disease. However, conventional thalassemia<span> target diagnosis often fails to identify these rare deletions. Here we reported a family with two previous pregnancies of Hb Bart's hydrops fetalis and was seeking for </span></span>prenatal diagnosis during the third pregnancy. Both parents had low level of </span></span>Hemoglobin A2<span> indicating α-thalassemia. Conventional Gap-PCR and PCR-reverse dot blot showed the father carried –</span></span><sup>SEA</sup> deletion but did not identify any variants in the mother. Multiplex ligation-dependent probe amplification identified a deletion containing two HS-40 probes but could not determine the exact region. Finally, a long-read sequencing (LRS)-based approach directly identified that the exact deletion region was chr16: 48,642-132,584, which was located in the α-globin upstream regulatory elements and named (αα)<sup>JM</sup><span> after the Jiangmen city. Gap-PCR and Sanger sequencing confirmed the breakpoint. Both the mother and fetus from the third pregnancy carried heterozygous (αα)</span><sup>JM</sup>, and the fetus was normally delivered at gestational age of 39 weeks. This study demonstrated that LRS technology had great advantages over conventional target diagnosis methods for identifying rare thalassemia variants and assisted better carrier screening and prenatal diagnosis of thalassemia.</p></div>","PeriodicalId":8972,"journal":{"name":"Blood Cells Molecules and Diseases","volume":"103 ","pages":"Article 102764"},"PeriodicalIF":2.3,"publicationDate":"2023-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9997888","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Blood Cells Molecules and Diseases
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1