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Using citizen science data for predicting the timing of ecological phenomena across regions 利用公民科学数据预测跨区域生态现象的发生时间
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-07-09 DOI: 10.1093/biosci/biae041
César Capinha, Ana Ceia-Hasse, Sergio de-Miguel, Carlos Vila-Viçosa, Miguel Porto, Ivan Jarić, Patricia Tiago, Néstor Fernández, Jose Valdez, Ian McCallum, Henrique Miguel Pereira
The scarcity of long-term observational data has limited the use of statistical or machine-learning techniques for predicting intraannual ecological variation. However, time-stamped citizen-science observation records, supported by media data such as photographs, are increasingly available. In the present article, we present a novel framework based on the concept of relative phenological niche, using machine-learning algorithms to model observation records as a temporal sample of environmental conditions in which the represented ecological phenomenon occurs. Our approach accurately predicts the temporal dynamics of ecological events across large geographical scales and is robust to temporal bias in recording effort. These results highlight the vast potential of citizen-science observation data to predict ecological phenomena across space, including in near real time. The framework is also easily applicable for ecologists and practitioners already using machine-learning and statistics-based predictive approaches.
长期观测数据的稀缺限制了统计或机器学习技术在预测年内生 态变化方面的应用。然而,在照片等媒体数据的支持下,有时间戳的公民科学观测记录越来越多。在本文中,我们提出了一个基于相对物候生态位概念的新框架,利用机器学习算法将观测记录建模为代表生态现象发生的环境条件的时间样本。我们的方法能准确预测大地理范围内生态事件的时间动态,并且不受记录工作中时间偏差的影响。这些结果凸显了公民科学观测数据在预测跨空间(包括近实时)生态现象方面的巨大潜力。该框架也很容易适用于已经在使用机器学习和基于统计的预测方法的生态学家和从业人员。
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引用次数: 0
Scientific telephone: The cautionary tale of the global coverage of lichens. 科学电话:地衣全球覆盖率的警示故事。
IF 7.6 1区 生物学 Q1 BIOLOGY Pub Date : 2024-07-04 eCollection Date: 2024-07-01 DOI: 10.1093/biosci/biae048
Katherine H I Drotos, Douglas W Larson, R Troy McMullin

Scientific history has many examples of profound statements that are later found to be unsubstantiated. The consequences of such misinformation can be dire. In the present article, we present a case where an unevidenced estimate of global lichen coverage proliferated through both scientific literature and popular media. We traced this estimate to a non-peer-reviewed publication from 1987. We found 76 academic articles (collectively cited 4125 times) and 13 other academic documents citing the statistic, citation chains without source attribution, and instances where the number or context was changed. We also found the statistic 37 times in popular media, which is especially concerning, given that these media communicate science to the broader public. We demonstrate how an unevidenced statement can spread, change through time, and ultimately be repeated without demand for evidence. We hope this case unplugs the telephone and provides a cautionary tale for researchers to ensure critical evaluation of citation and communication practices.

科学史上有许多深奥的论述后来被发现没有事实根据的例子。这种错误信息的后果可能很严重。在本文中,我们介绍了这样一个案例:一个未经证实的全球地衣覆盖率估计值在科学文献和大众媒体中广为流传。我们追溯到 1987 年的一份未经同行评审的出版物。我们发现有 76 篇学术文章(共被引用 4125 次)和 13 篇其他学术文献引用了这一统计数字,引用链中没有注明来源,数字或上下文也被更改。我们还在大众媒体中发现了 37 次该统计数据,这尤其令人担忧,因为这些媒体向更广泛的公众传播科学知识。我们展示了未经证实的声明是如何传播的,如何随着时间的推移而改变,并最终在不需要证据的情况下被重复的。我们希望这个案例能拔掉电话线,为研究人员提供一个警示,以确保对引用和传播实践进行批判性评估。
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引用次数: 0
Rapid eDNA survey reveals a unique biodiversity hotspot: The Corubal River, West Africa 快速 eDNA 调查揭示了一个独特的生物多样性热点:西非科鲁巴河
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-06-27 DOI: 10.1093/biosci/biae036
Manuel Lopes-Lima, Vincent Prié, Mutaro Camará, Luis M P Ceríaco, Vasco Fernandes, Sónia Ferreira, Duarte V Gonçalves, Miguel Lecoq, Filipa M S Martins, Diogo Parrinha, Aissa Regalla de Barros, Alice Valentini, Joana Veríssimo, Luís Palma, Pedro Beja
The Corubal (Guinea-Bissau) is a wild but underexplored river in West Africa. This study underscores the potential of environmental DNA (eDNA) surveys to fill biodiversity knowledge gaps in the region. We filtered large water volumes at 11 sites along the watershed, amplified multiple molecular markers, and performed high PCR (polymerase chain reaction) replication and in-depth sequencing. We recorded 2589 amplicon sequence variants, with accumulation curves indicating the need for additional sampling to achieve a thorough survey. The taxonomic assignments were constrained by the scarcity of genomic resources. We recorded 125 species of aquatic and terrestrial vertebrates, including 21 new to the country, predominantly fish (61.9%). Surprisingly, crocodiles were not detected, despite their known presence. There were 11 imperiled species, two of which are Critically Endangered (Western chimpanzee and the mussel Pleiodon ovatus). Our findings support the conservation importance of the Corubal, provide a baseline for future monitoring, and highlight the challenges and opportunities of eDNA surveys in remote tropical rivers.
科鲁巴河(几内亚比绍)是西非的一条野生河流,但开发不足。这项研究强调了环境 DNA(eDNA)调查在填补该地区生物多样性知识空白方面的潜力。我们在流域沿岸的 11 个地点过滤了大量的水,扩增了多个分子标记,并进行了高PCR(聚合酶链反应)复制和深度测序。我们记录了 2589 个扩增子序列变异,累积曲线表明需要进行更多取样才能实现全面调查。由于基因组资源稀缺,分类工作受到限制。我们记录了 125 种水生和陆生脊椎动物,包括 21 种该国新发现的物种,主要是鱼类(61.9%)。令人惊讶的是,我们没有发现鳄鱼,尽管众所周知它们的存在。有 11 种濒危物种,其中两种为极度濒危物种(西部黑猩猩和贻贝 Pleiodon ovatus)。我们的研究结果证明了科鲁巴河保护工作的重要性,为今后的监测工作提供了基线,并凸显了在偏远热带河流进行 eDNA 调查所面临的挑战和机遇。
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引用次数: 0
Shaping scientists: How faculty values influence graduate student recruitment and diversity, equity, and inclusion 塑造科学家:教师的价值观如何影响研究生招生以及多样性、公平性和包容性
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-06-25 DOI: 10.1093/biosci/biae047
Alex J Jensen, Sara P Bombaci
Recruitment is central to diversity, equity, and inclusion (DEI) initiatives within higher education, but how faculty recruit their graduate students and consider DEI in this context remains unknown. We surveyed environmental science faculty across the United States, aiming to better understand what faculty value when recruiting, as well as when, how, and why they consider DEI. We show that faculty valued applicant character traits highest, followed by soft skills and relevant technical experience. DEI-related criteria were of low to medium importance and were generally rated lower by faculty who were White, male, and at R1 institutions, although there were nuances related to applicant degree (MS versus PhD), whether we were asking about the applicant’s commitment to DEI or their demographic identity, and the stage of the recruitment process. We identified opportunities for more inclusive graduate recruitment, including higher pay, more objective evaluation strategies, and a need for institutions to incentivize productivity without undermining the faculty’s ability to attract diverse graduate students.
招生是高等教育中多样性、公平性和包容性(DEI)举措的核心,但教师如何招收研究生以及在此背景下如何考虑 DEI 仍然是个未知数。我们对全美的环境科学教师进行了调查,旨在更好地了解教师在招聘时看重的是什么,以及他们何时、如何和为什么会考虑 "多元化、公平与包容"。我们发现,教师最看重申请人的性格特征,其次是软技能和相关技术经验。虽然与申请人的学位(硕士还是博士)、我们询问的是申请人对 DEI 的承诺还是他们的人口特征以及招聘过程所处的阶段有关,但与 DEI 相关的标准在白人、男性和 R1 院校中的重要性从低到中不等,且评分普遍较低。我们发现了一些提高研究生招聘包容性的机会,包括更高的薪 酬、更客观的评估策略,以及院校在不削弱教师吸引多元化研究生 的能力的前提下激励生产力的必要性。
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引用次数: 0
Protecting stable biological nomenclatural systems enables universal communication: A collective international appeal. 保护稳定的生物命名系统可促进全球交流:国际集体呼吁。
IF 7.6 1区 生物学 Q1 BIOLOGY Pub Date : 2024-06-19 eCollection Date: 2024-07-01 DOI: 10.1093/biosci/biae043
Pedro Jiménez-Mejías, Saúl Manzano, Vinita Gowda, Frank-Thorsten Krell, Mei-Ying Lin, Santiago Martín-Bravo, Laura Martín-Torrijos, Gonzalo Nieto Feliner, Sergei L Mosyakin, Robert F C Naczi, Carmen Acedo, Inés Álvarez, Jorge V Crisci, Modesto Luceño Garcés, John Manning, Juan Carlos Moreno Saiz, A Muthama Muasya, Ricarda Riina, Andrea Sánchez Meseguer, Daniel Sánchez-Mata

The fundamental value of universal nomenclatural systems in biology is that they enable unambiguous scientific communication. However, the stability of these systems is threatened by recent discussions asking for a fairer nomenclature, raising the possibility of bulk revision processes for "inappropriate" names. It is evident that such proposals come from very deep feelings, but we show how they can irreparably damage the foundation of biological communication and, in turn, the sciences that depend on it. There are four essential consequences of objective codes of nomenclature: universality, stability, neutrality, and transculturality. These codes provide fair and impartial guides to the principles governing biological nomenclature and allow unambiguous universal communication in biology. Accordingly, no subjective proposals should be allowed to undermine them.

生物学中通用命名系统的基本价值在于它们能够进行明确无误的科学交流。然而,这些系统的稳定性受到了最近一些讨论的威胁,这些讨论要求更公平的命名法,并提出了对 "不恰当 "名称进行批量修订的可能性。很明显,这些提议是出于深厚的感情,但我们要说明的是,这些提议会如何对生物交流的基础造成不可挽回的损害,进而对依赖于生物交流的科学造成不可挽回的损害。客观命名法有四个基本结果:普遍性、稳定性、中立性和跨文化性。这些准则为生物命名的原则提供了公平公正的指导,并使生物学的交流具有明确的普遍性。因此,不应允许任何主观建议破坏这些准则。
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引用次数: 0
Correction to: Artificial intelligence helps drive new frontiers in ecology. 更正为人工智能有助于推动生态学新领域的发展。
IF 7.6 1区 生物学 Q1 BIOLOGY Pub Date : 2024-06-19 eCollection Date: 2024-11-01 DOI: 10.1093/biosci/biae056

[This corrects the article DOI: 10.1093/biosci/biae016.].

[此处更正了文章 DOI:10.1093/biosci/biae016]。
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引用次数: 0
The city nature challenge: A global citizen science phenomenon contributing to biodiversity knowledge and informing local government practices. 城市自然挑战:全球公民科学现象,促进生物多样性知识,为地方政府实践提供信息。
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-04-18 eCollection Date: 2024-04-01 DOI: 10.1093/biosci/biae012
Estibaliz Palma, Luis Mata, Kylie Cohen, Doug Evans, Bernard Gandy, Nadine Gaskell, Hiliary Hatchman, Anna Mezzetti, Deborah Neumann, Jessica O'Keefe, Amy Shaw, Millie Wells, Laurence Williams, Amy K Hahs

The bioblitz phenomenon has recently branched into cities, presenting exciting opportunities for local governments to channel participants' efforts toward local issues. The City Nature Challenge (CNC) is one such initiative that has been quickly taken up by hundreds of municipalities worldwide. Despite high levels of participation, we still lack a framework for evaluating how the CNC contributes to local biodiversity knowledge and to inform local government practices. In the present article, we develop such a tool and present a case study that illustrates its applicability. We demonstrate that the collected records contributed to a better understanding of contemporary, local biodiversity patterns and provide a more realistic representation of understudied groups such as insects and fungi. Importantly, we show that the CNC presented local governments with a cost-effective tool to make informed, evidence-based management and policy decisions, improve education and engagement programs, foster cross-council collaborations, and support a stronger sense of environmental stewardship within the local community.

最近,生物飓风现象已扩展到城市,为地方政府提供了令人兴奋的机会,将参与者的努力引导到地方问题上来。城市自然挑战赛(CNC)就是这样一项倡议,已被全球数百个城市迅速采纳。尽管参与度很高,但我们仍然缺乏一个框架来评估 CNC 如何促进地方生物多样性知识的发展,并为地方政府的实践提供信息。在本文中,我们开发了这样一种工具,并介绍了一个案例研究,以说明其适用性。我们证明,收集到的记录有助于更好地了解当代地方生物多样性模式,并更真实地反映了昆虫和真菌等未被充分研究的群体。重要的是,我们表明 CNC 为地方政府提供了一种具有成本效益的工具,可用于做出知情、循证的管理和政策决策,改进教育和参与计划,促进跨理事会合作,并增强地方社区的环境管理意识。
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引用次数: 0
Toward solving the global green-green dilemma between wind energy production and bat conservation. 努力解决全球风能生产与蝙蝠保护之间的 "绿色-绿色 "难题。
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-04-10 eCollection Date: 2024-04-01 DOI: 10.1093/biosci/biae023
Christian C Voigt, Enrico Bernard, Joe Chun-Chia Huang, Winifred F Frick, Christian Kerbiriou, Kate MacEwan, Fiona Mathews, Armando Rodríguez-Durán, Carolin Scholz, Paul W Webala, Justin Welbergen, Michael Whitby

Wind energy production is growing rapidly worldwide in an effort to reduce greenhouse gas emissions. However, wind energy production is not environmentally neutral. Negative impacts on volant animals, such as bats, include fatalities at turbines and habitat loss due to land-use change and displacement. Siting turbines away from ecologically sensitive areas and implementing measures to reduce fatalities are critical to protecting bat populations. Restricting turbine operations during periods of high bat activity is the most effective form of mitigation currently available to reduce fatalities. Compensating for habitat loss and offsetting mortality are not often practiced, because meaningful offsets are lacking. Legal frameworks to prevent or mitigate the negative impacts of wind energy on bats are absent in most countries, especially in emerging markets. Therefore, governments and lending institutions are key in reconciling wind energy production with biodiversity goals by requiring sufficient environmental standards for wind energy projects.

为了减少温室气体排放,风能生产在全球范围内迅速增长。然而,风能生产并非对环境无害。对蝙蝠等挥发性动物的负面影响包括涡轮机造成的死亡,以及土地使用变化和迁移造成的栖息地丧失。将涡轮机选址在远离生态敏感区域的地方,并采取措施减少死亡事故,对于保护蝙蝠种群至关重要。在蝙蝠活动频繁的时期限制涡轮机的运行是目前减少死亡事故最有效的缓解措施。由于缺乏有意义的补偿措施,补偿栖息地损失和抵消死亡率的做法并不常见。大多数国家,尤其是新兴市场国家,都缺乏防止或减轻风能对蝙蝠负面影响的法律框架。因此,政府和贷款机构是协调风能生产与生物多样性目标的关键,要求风能项目达到足够的环境标准。
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引用次数: 0
What sexual diversity in the natural world can teach humans about sex, gender, and inclusive biology. 自然界的性多样性能给人类带来哪些关于性、性别和包容性生物学的启示。
IF 7.6 1区 生物学 Q1 BIOLOGY Pub Date : 2024-04-10 eCollection Date: 2024-07-01 DOI: 10.1093/biosci/biae018
Benjamin Swift
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引用次数: 0
Citizen silence: Missed opportunities in citizen science 公民沉默:公民科学中错失的机会
IF 10.1 1区 生物学 Q1 BIOLOGY Pub Date : 2024-03-28 DOI: 10.1093/biosci/biae020
Damon M Hall, Pedro M Avellaneda-Lopez, Darren L Ficklin, Jason H Knouft, Christopher Lowry
Citizen science is personal. Participation is contingent on the citizens’ connection to a topic or to interpersonal relationships meaningful to them. But from the peer-reviewed literature, scientists appear to have an acquisitive data-centered relationship with citizens. This has spurred ethical and pragmatic criticisms of extractive relationships with citizen scientists. We suggest five practical steps to shift citizen-science research from extractive to relational, reorienting the research process and providing reciprocal benefits to researchers and citizen scientists. By virtue of their interests and experience within their local environments, citizen scientists have expertise that, if engaged, can improve research methods and product design decisions. To boost the value of scientific outputs to society and participants, citizen-science research teams should rethink how they engage and value volunteers.
公民科学是个人的。公民的参与取决于他们与某一主题或对他们有意义的人际关系的联系。但从同行评议的文献来看,科学家与公民之间似乎是一种以获取数据为中心的关系。这引发了对与公民科学家之间榨取性关系的伦理和实用主义批评。我们建议采取五个切实可行的步骤,将公民科学研究从采掘式转变为关系式,重新定位研究过程,为研究人员和公民科学家提供互惠互利。公民科学家凭借他们的兴趣和在当地环境中的经验,拥有专业知识,如果他们参与进来,可以改进研究方法和产品设计决策。为了提高科学成果对社会和参与者的价值,公民科学研究团队应重新思考如何吸引和重视志愿者。
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引用次数: 0
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