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Hierarchical imaging: a new concept for targeted imaging of large volumes from cells to tissues 分层成像:从细胞到组织的大体积靶向成像的新概念
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-12-01 DOI: 10.1186/s12860-016-0122-8
I. Wacker, Waldemar Spomer, Andreas Hofmann, Marlene Thaler, S. Hillmer, U. Gengenbach, Rasmus R. Schröder
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引用次数: 29
Nuclear envelope structural defect underlies the main cause of aneuploidy in ovarian carcinogenesis. 核膜结构缺陷是卵巢癌发生非整倍体的主要原因。
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-11-22 DOI: 10.1186/s12860-016-0114-8
Callinice D Capo-Chichi, Toni M Yeasky, Elizabeth R Smith, Xiang-Xi Xu

Background: The Cancer Atlas project has shown that p53 is the only commonly (96 %) mutated gene found in high-grade serous epithelial ovarian cancer, the major histological subtype. Another general genetic change is extensive aneuploidy caused by chromosomal numerical instability, which is thought to promote malignant transformation. Conventionally, aneuploidy is thought to be the result of mitotic errors and chromosomal nondisjunction during mitosis. Previously, we found that ovarian cancer cells often lost or reduced nuclear lamina proteins lamin A/C, and suppression of lamin A/C in cultured ovarian epithelial cells leads to aneuploidy. Following up, we investigated the mechanisms of lamin A/C-suppression in promoting aneuploidy and synergy with p53 inactivation.

Results: We found that suppression of lamin A/C by siRNA in human ovarian surface epithelial cells led to frequent nuclear protrusions and formation of micronuclei. Lamin A/C-suppressed cells also often underwent mitotic failure and furrow regression to form tetraploid cells, which frequently underwent aberrant multiple polar mitosis to form aneuploid cells. In ovarian surface epithelial cells isolated from p53 null mice, transient suppression of lamin A/C produced massive aneuploidy with complex karyotypes, and the cells formed malignant tumors when implanted in mice.

Conclusions: Based on the results, we conclude that a nuclear envelope structural defect, such as the loss or reduction of lamin A/C proteins, leads to aneuploidy by both the formation of tetraploid intermediates following mitotic failure, and the reduction of chromosome (s) following nuclear budding and subsequent loss of micronuclei. We suggest that the nuclear envelope defect, rather than chromosomal unequal distribution during cytokinesis, is the main cause of aneuploidy in ovarian cancer development.

背景:癌症图谱项目显示p53是唯一在高级别浆液性上皮性卵巢癌(主要的组织学亚型)中发现的常见突变基因(96%)。另一种普遍的遗传变化是由染色体数量不稳定引起的广泛的非整倍体,这被认为促进了恶性转化。传统上,非整倍体被认为是有丝分裂过程中有丝分裂错误和染色体不分离的结果。先前,我们发现卵巢癌细胞经常丢失或减少核层蛋白lamin A/C,并且在培养的卵巢上皮细胞中抑制lamin A/C导致非整倍体。随后,我们研究了lamin A/ c抑制促进非整倍体的机制以及与p53失活的协同作用。结果:我们发现siRNA抑制人卵巢表面上皮细胞的纤层蛋白A/C,导致细胞核频繁突出并形成微核。Lamin A/ c抑制的细胞也经常发生有丝分裂失败和沟退形成四倍体细胞,四倍体细胞经常发生异常多极有丝分裂形成非整倍体细胞。在从p53缺失小鼠分离的卵巢表面上皮细胞中,短暂抑制层合蛋白A/C可产生大量具有复杂核型的非整倍体,细胞植入小鼠后形成恶性肿瘤。结论:基于这些结果,我们得出结论,核膜结构缺陷,如层状蛋白a /C蛋白的丢失或减少,导致非整倍性,在有丝分裂失败后形成四倍体中间体,在核出芽和随后的微核丢失后染色体减少。我们认为,核膜缺陷,而不是染色体不均匀分布在细胞质分裂,是卵巢癌发展非整倍体的主要原因。
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引用次数: 26
A functional endosomal pathway is necessary for lysosome biogenesis in Drosophila 一个功能性的内体途径是果蝇溶酶体生物发生所必需的
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-11-16 DOI: 10.1186/s12860-016-0115-7
Anne-Claire Jacomin, M. Fauvarque, E. Taillebourg
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引用次数: 0
Expressed alleles of imprinted IGF2, DLK1 and MEG3 colocalize in 3D-preserved nuclei of porcine fetal cells 印迹的IGF2、DLK1和MEG3等位基因在猪胚胎细胞3d保存的细胞核中共定位
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-10-01 DOI: 10.1186/s12860-016-0113-9
Y. Lahbib-Mansais, H. Barasc, M. Marti-Marimon, F. Mompart, E. Iannuccelli, D. Robelin, J. Riquet, M. Yerle-Bouissou
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引用次数: 11
Nuclear and structural dynamics during the establishment of a specialized effector-secreting cell by Magnaporthe oryzae in living rice cells 稻瘟病菌在水稻细胞中特异效应分泌细胞形成过程中的核动力学和结构动力学
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-09-26 DOI: 10.1186/s12860-017-0126-z
E. Shipman, Kiersun Jones, C. B. Jenkinson, D. W. Kim, Jie Zhu, C. Khang
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引用次数: 19
Loss of hif-1 promotes resistance to the exogenous mitochondrial stressor ethidium bromide in Caenorhabditis elegans hif-1的缺失促进秀丽隐杆线虫对外源线粒体应激源溴化乙锭的抗性
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-09-13 DOI: 10.1186/s12860-016-0112-x
Muntasir Kamal, D. D’Amora, T. Kubiseski
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引用次数: 1
High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division. 高分辨率成像揭示了非通过细胞分裂遗传的细胞间染色质状态的异质性。
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-09-08 DOI: 10.1186/s12860-016-0111-y
David Dickerson, Marek Gierliński, Vijender Singh, Etsushi Kitamura, Graeme Ball, Tomoyuki U Tanaka, Tom Owen-Hughes

Background: Genomes of eukaryotes exist as chromatin, and it is known that different chromatin states can influence gene regulation. Chromatin is not a static structure, but is known to be dynamic and vary between cells. In order to monitor the organisation of chromatin in live cells we have engineered fluorescent fusion proteins which recognize specific operator sequences to tag pairs of syntenic gene loci. The separation of these loci was then tracked in three dimensions over time using fluorescence microscopy.

Results: We established a work flow for measuring the distance between two fluorescently tagged, syntenic gene loci with a mean measurement error of 63 nm. In general, physical separation was observed to increase with increasing genomic separations. However, the extent to which chromatin is compressed varies for different genomic regions. No correlation was observed between compaction and the distribution of chromatin markers from genomic datasets or with contacts identified using capture based approaches. Variation in spatial separation was also observed within cells over time and between cells. Differences in the conformation of individual loci can persist for minutes in individual cells. Separation of reporter loci was found to be similar in related and unrelated daughter cell pairs.

Conclusions: The directly observed physical separation of reporter loci in live cells is highly dynamic both over time and from cell to cell. However, consistent differences in separation are observed over some chromosomal regions that do not correlate with factors known to influence chromatin states. We conclude that as yet unidentified parameters influence chromatin configuration. We also find that while heterogeneity in chromatin states can be maintained for minutes between cells, it is not inherited through cell division. This may contribute to cell-to-cell transcriptional heterogeneity.

背景:真核生物的基因组以染色质的形式存在,不同的染色质状态可以影响基因调控。染色质不是一个静态结构,而是动态的,在细胞之间变化。为了监测活细胞中染色质的组织,我们设计了荧光融合蛋白,该蛋白识别特定的操作符序列来标记对同构基因位点。然后使用荧光显微镜在三维空间中跟踪这些位点的分离。结果:我们建立了一个测量两个荧光标记的同源基因位点之间距离的工作流程,平均测量误差为63 nm。一般来说,物理分离随着基因组分离的增加而增加。然而,染色质被压缩的程度因不同的基因组区域而异。没有观察到压缩与基因组数据集的染色质标记分布之间的相关性,也没有观察到与使用基于捕获的方法确定的接触之间的相关性。随着时间的推移,细胞内部和细胞之间的空间分离也会发生变化。单个基因座构象的差异可以在单个细胞中持续数分钟。报告位点的分离在相关和不相关的子细胞对中是相似的。结论:活细胞中直接观察到的报告基因的物理分离随时间和细胞间的变化是高度动态的。然而,在一些与已知影响染色质状态的因素无关的染色体区域中观察到分离的一致差异。我们得出结论,尚未确定的参数影响染色质配置。我们还发现,虽然染色质状态的异质性可以在细胞之间维持几分钟,但它不是通过细胞分裂遗传的。这可能导致细胞间转录的异质性。
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引用次数: 10
A specific FMNL2 isoform is up-regulated in invasive cells. 一种特定的FMNL2亚型在侵袭性细胞中上调。
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-08-30 DOI: 10.1186/s12860-016-0110-z
Christine Péladeau, Allan Heibein, Melissa T Maltez, Sarah J Copeland, John W Copeland

Background: Formins are a highly conserved family of cytoskeletal remodeling proteins. A growing body of evidence suggests that formins play key roles in the progression and spread of a variety of cancers. There are 15 human formin proteins and of these the Diaphanous-Related Formins (DRFs) are the best characterized. Included in the DRFs are the Formin-Like proteins, FMNL1, 2 & 3, each of which have been strongly implicated in driving tumorigenesis and metastasis of specific tumors. In particular, increased FMNL2 expression correlates with increased invasiveness of colorectal cancer (CRC) in vivo and for a variety of CRC cell-lines in vitro. FMNL2 expression is also required for invasive cell motility in other cancer cell-lines. There are multiple alternatively spliced isoforms of FMNL2 and it is predicted that the encoded proteins will differ in their regulation, subcellular localization and in their ability to regulate cytoskeletal dynamics.

Results: Using RT-PCR we identified four FMNL2 isoforms expressed in CRC and melanoma cell-lines. We find that a previously uncharacterized FMNL2 isoform is predominantly expressed in a variety of melanoma and CRC cell lines; this isoform is also more effective in driving 3D motility. Building on previous reports, we also show that FMNL2 is required for invasion in A375 and WM266.4 melanoma cells.

Conclusions: Taken together, these results suggest that FMNL2 is likely to be generally required in melanoma cells for invasion, that a specific isoform of FMNL2 is up-regulated in invasive CRC and melanoma cells and this isoform is the most effective at facilitating invasion.

背景:Formins是一个高度保守的细胞骨架重塑蛋白家族。越来越多的证据表明,形成蛋白在多种癌症的进展和扩散中起着关键作用。人类有15种双胍蛋白,其中透光相关双胍蛋白(DRFs)的特征最为明显。DRFs中包括formin样蛋白FMNL1、2和3,它们都与驱动特定肿瘤的肿瘤发生和转移密切相关。特别是,FMNL2表达的增加与体内结直肠癌(CRC)的侵袭性增加以及体外多种CRC细胞系的侵袭性增加相关。在其他癌细胞系中,侵袭性细胞运动也需要FMNL2的表达。FMNL2有多个可选择剪接的异构体,据预测,编码的蛋白质在其调控、亚细胞定位和调节细胞骨架动力学的能力方面会有所不同。结果:通过RT-PCR,我们鉴定出了在结直肠癌和黑色素瘤细胞系中表达的四种FMNL2亚型。我们发现,一种以前未被表征的FMNL2亚型在多种黑色素瘤和结直肠癌细胞系中主要表达;这种异构体在驱动3D运动方面也更有效。基于先前的报道,我们还发现FMNL2是侵袭A375和WM266.4黑色素瘤细胞所必需的。结论:综上所述,这些结果表明,FMNL2很可能是黑色素瘤细胞侵袭所必需的,FMNL2的一种特异性异构体在侵袭性结直肠癌和黑色素瘤细胞中上调,该异构体在促进侵袭方面最有效。
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引用次数: 15
Prolactin-induced PAK1 tyrosyl phosphorylation promotes FAK dephosphorylation, breast cancer cell motility, invasion and metastasis. 催乳素诱导PAK1酪氨酸磷酸化促进FAK去磷酸化,促进乳腺癌细胞运动、侵袭和转移。
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-08-20 DOI: 10.1186/s12860-016-0109-5
Alan Hammer, Maria Diakonova

Background: The serine/threonine kinase PAK1 is an important regulator of cell motility. Both PAK1 and the hormone/cytokine prolactin (PRL) have been implicated in breast cancer cell motility, however, the exact mechanisms guiding PRL/PAK1 signaling in breast cancer cells have not been fully elucidated. Our lab has previously demonstrated that PRL-activated tyrosine kinase JAK2 phosphorylates PAK1 on tyrosines 153, 201, and 285, and that tyrosyl phosphorylated PAK1 (pTyr-PAK1) augments migration and invasion of breast cancer cells.

Results: Here we further investigate the mechanisms by which pTyr-PAK1 enhances breast cancer cell motility in response to PRL. We demonstrate a distinct reduction in PRL-induced FAK auto-phosphorylation in T47D and TMX2-28 breast cancer cells overexpressing wild-type PAK1 (PAK1 WT) when compared to cells overexpressing either GFP or phospho-tyrosine-deficient mutant PAK1 (PAK1 Y3F). Furthermore, pTyr-PAK1 phosphorylates MEK1 on Ser298 resulting in subsequent ERK1/2 activation. PRL-induced FAK auto-phosphorylation is rescued in PAK1 WT cells by inhibiting tyrosine phosphatases and tyrosine phosphatase inhibition abrogates cell motility and invasion in response to PRL. siRNA-mediated knockdown of the tyrosine phosphatase PTP-PEST rescues FAK auto-phosphorylation in PAK1 WT cells and reduces both cell motility and invasion. Finally, we provide evidence that PRL-induced pTyr-PAK1 stimulates tumor cell metastasis in vivo.

Conclusion: These data provide insight into the mechanisms guiding PRL-mediated breast cancer cell motility and invasion and highlight a significant role for pTyr-PAK1 in breast cancer metastasis.

背景:丝氨酸/苏氨酸激酶PAK1是细胞运动的重要调节因子。PAK1和激素/细胞因子催乳素(PRL)都与乳腺癌细胞的运动有关,然而,在乳腺癌细胞中指导PRL/PAK1信号传导的确切机制尚未完全阐明。我们的实验室之前已经证明,prl激活的酪氨酸激酶JAK2磷酸化酪氨酸153、201和285上的PAK1,酪氨酸磷酸化的PAK1 (ptr -PAK1)增加了乳腺癌细胞的迁移和侵袭。结果:我们进一步研究了pTyr-PAK1在PRL作用下增强乳腺癌细胞运动的机制。我们发现,与过表达GFP或磷酸化酪氨酸缺失突变体PAK1 (PAK1 Y3F)的细胞相比,在过表达野生型PAK1 (PAK1 WT)的T47D和TMX2-28乳腺癌细胞中,prl诱导的FAK自磷酸化明显降低。此外,pTyr-PAK1磷酸化MEK1的Ser298位点,导致随后的ERK1/2激活。PRL诱导的FAK自磷酸化在PAK1 WT细胞中通过抑制酪氨酸磷酸酶得以恢复,酪氨酸磷酸酶的抑制抑制了PRL对细胞的运动和侵袭。sirna介导的酪氨酸磷酸酶PTP-PEST敲低可恢复PAK1 WT细胞中FAK的自磷酸化,并降低细胞运动和侵袭。最后,我们提供了证据,证明prl诱导的pTyr-PAK1在体内刺激肿瘤细胞转移。结论:这些数据揭示了prl介导的乳腺癌细胞运动和侵袭的指导机制,并突出了pTyr-PAK1在乳腺癌转移中的重要作用。
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引用次数: 11
Aneuploidy screening of embryonic stem cell clones by metaphase karyotyping and droplet digital polymerase chain reaction. 通过分裂期核型和液滴数字聚合酶链反应筛选胚胎干细胞克隆的非整倍体。
Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2016-08-05 DOI: 10.1186/s12860-016-0108-6
Gemma F Codner, Loic Lindner, Adam Caulder, Marie Wattenhofer-Donzé, Adam Radage, Annelyse Mertz, Benjamin Eisenmann, Joffrey Mianné, Edward P Evans, Colin V Beechey, Martin D Fray, Marie-Christine Birling, Yann Hérault, Guillaume Pavlovic, Lydia Teboul

Background: Karyotypic integrity is essential for the successful germline transmission of alleles mutated in embryonic stem (ES) cells. Classical methods for the identification of aneuploidy involve cytological analyses that are both time consuming and require rare expertise to identify mouse chromosomes.

Results: As part of the International Mouse Phenotyping Consortium, we gathered data from over 1,500 ES cell clones and found that the germline transmission (GLT) efficiency of clones is compromised when over 50 % of cells harbour chromosome number abnormalities. In JM8 cells, chromosomes 1, 8, 11 or Y displayed copy number variation most frequently, whilst the remainder generally remain unchanged. We developed protocols employing droplet digital polymerase chain reaction (ddPCR) to accurately quantify the copy number of these four chromosomes, allowing efficient triage of ES clones prior to microinjection. We verified that assessments of aneuploidy, and thus decisions regarding the suitability of clones for microinjection, were concordant between classical cytological and ddPCR-based methods. Finally, we improved the method to include assay multiplexing so that two unstable chromosomes are counted simultaneously (and independently) in one reaction, to enhance throughput and further reduce the cost.

Conclusion: We validated a PCR-based method as an alternative to classical karyotype analysis. This technique enables laboratories that are non-specialist, or work with large numbers of clones, to precisely screen ES cells for the most common aneuploidies prior to microinjection to ensure the highest level of germline transmission potential. The application of this method allows early exclusion of aneuploid ES cell clones in the ES cell to mouse conversion process, thus improving the chances of obtaining germline transmission and reducing the number of animals used in failed microinjection attempts. This method can be applied to any other experiments that require accurate analysis of the genome for copy number variation (CNV).

背景:核型完整性对胚胎干细胞(ES)中突变等位基因的成功种系传递至关重要。识别非整倍体的经典方法涉及细胞学分析,既耗时又需要罕见的专业知识来识别小鼠染色体:作为国际小鼠表型协会(International Mouse Phenotyping Consortium)的成员,我们收集了1500多个ES细胞克隆的数据,发现当超过50%的细胞存在染色体数目异常时,克隆的种系传递(GLT)效率就会受到影响。在 JM8 细胞中,1、8、11 或 Y 染色体最常出现拷贝数变异,而其余染色体一般保持不变。我们开发了采用液滴数字聚合酶链式反应(ddPCR)的方案,以准确量化这四条染色体的拷贝数,从而在显微注射前对 ES 克隆进行有效分流。我们验证了经典细胞学方法和基于 ddPCR 的方法对非整倍体的评估结果以及克隆是否适合显微注射的决定是一致的。最后,我们对该方法进行了改进,加入了检测复用功能,这样就能在一个反应中同时(独立)对两条不稳定染色体进行计数,从而提高通量并进一步降低成本:我们验证了一种基于 PCR 的方法,它可以替代传统的核型分析。这项技术可使非专业实验室或处理大量克隆的实验室在显微注射前精确筛查 ES 细胞中最常见的非整倍体,以确保最高水平的种系传播潜力。应用这种方法可以在 ES 细胞转化为小鼠的过程中及早排除非整倍体 ES 细胞克隆,从而提高获得种系传代的机会,减少显微注射失败的动物数量。这种方法还可用于其他任何需要精确分析基因组拷贝数变异(CNV)的实验。
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引用次数: 0
期刊
BMC Cell Biology
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