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Longitudinal analysis of blood-borne prion infection 血源性朊病毒感染的纵向分析
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.045
Alan M. Elder , Davin M. Henderson , Amy V. Nalls , Anthony E. Kincaid , Edward A. Hoover , Jason C. Bartz , Candace K. Mathiason

Transmissible spongiform encephalopathies (TSEs), or prion diseases, affecting human and animal species can be transmitted from TSE-infected individuals to naïve susceptible hosts during the long asymptomatic (years to decades) and symptomatic disease stages. The presence of infectious hematogenous prions in asymptomatic TSE-infected hosts demonstrates the highly infectious nature of blood-borne prions in hosts lacking overt clinical symptoms. It is currently unknown when and how infectious prions first enter the blood following initial exposure. We have previously shown that the whole-blood real-time quaking-induced conversion assay (wbRT-QuIC) possesses 100% specificity and >92% sensitivity, making it an ideal tool to address this question. Here, we use wbRT-QuIC to analyze whole blood collected from oral, extranasal or aerosol TSE-exposed hosts for blood-borne prions. Our results demonstrate that conversion competent prions in the inoculum are capable of crossing mucosal surfaces and entering the circulatory system within 30 min—no matter the route of exposure. Detection of the inoculum minutes post exposure is followed by a steady decline in the detection of blood-borne prions up to 3 days which is followed by a progressive increase in the detection of nascent conversion competent prions between 1 and 17 months post exposure. These data provide the first evidence for the facile transport of mucosally acquired prions into the circulatory system, providing evidence for multiple routes of inter- and intra- host prion trafficking and shedding.

传染性海绵状脑病(tse)或朊病毒疾病,影响人类和动物物种,可在长期无症状(数年至数十年)和有症状的疾病阶段从tse感染个体传播给naïve易感宿主。感染性血源性朊病毒存在于无症状的tse感染宿主中,表明血源性朊病毒在没有明显临床症状的宿主中具有高度传染性。目前尚不清楚感染性朊病毒在初次接触后何时以及如何首次进入血液。我们之前的研究表明,全血实时震动诱导转化试验(wbRT-QuIC)具有100%的特异性和92%的灵敏度,使其成为解决这一问题的理想工具。在这里,我们使用wbRT-QuIC分析从口腔、鼻外或气溶胶暴露于tse的宿主收集的全血,以检测血源性朊病毒。我们的研究结果表明,无论接触途径如何,接种物中的转化能力朊病毒都能够在30分钟内穿过粘膜表面进入循环系统。在暴露后接种数分钟的检测之后,血源性朊病毒的检测持续下降至3天,随后在暴露后1至17个月期间,新生转化能力朊病毒的检测逐渐增加。这些数据为粘膜获得的朊病毒进入循环系统的便捷运输提供了第一个证据,为宿主间和宿主内朊病毒运输和脱落的多种途径提供了证据。
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引用次数: 1
Signal regulatory protein alpha (SIRPA) and kinase domain receptor (KDR) are key expression markers in cardiac specific precursor selection from hADSCs 信号调节蛋白α (SIRPA)和激酶结构域受体(KDR)是hascs中心脏特异性前体选择的关键表达标记
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.02.001
Vinod Kumar Verma , Syed Sultan Beevi , Tanya Debnath , Usha Shalini , Suguna Ratnakar Kamaraju , Lakshmi Kumari Kona , Yamuna Mohanram , Lakshmi Kiran Chelluri

Background

Cardiomyocyte enrichment strategies so far have not yielded scalable cardiac specific cell type. More so, the current data is restricted to embryonic stem cells (ESCs)/induced pluripotent stem cells (iPSCs), wherein the use of viral vectors is fraught with increased risk during clinical use. Herein, we profiled time-dependent gene/protein expression patterns across the cardiac ectoderm, endoderm, and mesoderm for isolating cardiac precursors from human adipose derived stem cells (hADSC).

Methods

Direct cardiac differentiation of hADSCs was carried out with 5-azacytidine and basic fibroblast growth factor (bFGF) in a one month long culture. The cells were periodically harvested, analyzed for unique persistent markers and their inherent regulation using quantitative polymerase chain reaction (qPCR), flow cytometry, immunoblot and immunocytochemistry assays. The identified markers were super paramagnetic iron oxide nanoparticle (SPION) tagged for segregation by magnetic activated cell sorting (MACS) and further evaluated their differentiation potential and checked for the purity by flow cytometry.

Results

The results demonstrated pronounced up-regulation of mesodermal and mature cardiac lineage markers at three weeks, while there was a down-regulation of pluripotent stem cell markers. This perhaps could be attributed to de-differentiation in maintaining the cardiac phenotype. However, signal regulatory protein alpha (SIRPA) and kinase domain receptor (KDR) persisted all through the culture period of one month, making them the most relevant and reliable cardiac specific markers. Dual labeling of these markers to SPION for cardiomyocyte enrichment by MACS column yielded cardiomyogenic-like cells in differentiation cultures with several functional positive markers.

Conclusions

Thus, SIRPA and KDR together provide cues in the enhancement and up-scaling of cardiomyocyte production in the cell replacement therapy.

Focal points

  • Benchside

    Identification of specific cell phenotypic markers to identify cardiac precursors in any tissue source with minimal cell manipulation is a novel process development tool in clinical translation.

  • Bedside

    A product developed in a closed system would minimize extraneous contaminants in long term cultures and development of such procedures minimizes culture failure rates from bench side.

  • Industry

    This unique identification of cell-specific marker would enable a tissue-specific translational plan and immensely help in the cardiac regeneration.

  • Government

    Financial inve

到目前为止,心肌细胞富集策略尚未产生可扩展的心脏特异性细胞类型。更重要的是,目前的数据仅限于胚胎干细胞(ESCs)/诱导多能干细胞(iPSCs),其中在临床使用中使用病毒载体充满了增加的风险。在此,我们分析了心脏外胚层、内胚层和中胚层的时间依赖性基因/蛋白表达模式,用于从人脂肪来源干细胞(hADSC)中分离心脏前体。方法采用5-氮杂胞苷和碱性成纤维细胞生长因子(bFGF)对hascs进行1个月的心脏直接分化培养。定期收集细胞,使用定量聚合酶链反应(qPCR)、流式细胞术、免疫印迹和免疫细胞化学分析独特的持久标记及其内在调节。鉴定的标记物为超顺磁性氧化铁纳米颗粒(SPION),经磁活化细胞分选(MACS)进行分离,并进一步通过流式细胞术检测其分化潜力和纯度。结果小鼠中胚层和成熟心脏谱系标记在3周时明显上调,而多能干细胞标记则下调。这可能归因于维持心脏表型的去分化。然而,信号调节蛋白α (SIRPA)和激酶结构域受体(KDR)在一个月的培养期间持续存在,使它们成为最相关和可靠的心脏特异性标志物。将这些标记物双重标记到SPION上,通过MACS柱富集心肌细胞,在分化培养物中产生具有几种功能阳性标记物的心肌样细胞。因此,在细胞替代疗法中,SIRPA和KDR共同为心肌细胞生成的增强和扩大提供了线索。特异性细胞表型标记的鉴定,以最小的细胞操作识别任何组织来源的心脏前体,是临床翻译中的一种新的过程开发工具。在封闭系统中开发的产品可以最大限度地减少长期培养中的外来污染物,并且开发此类程序可以最大限度地减少工作台侧的培养失败率。这种细胞特异性标记的独特识别将使组织特异性翻译计划成为可能,并极大地帮助心脏再生。•政府政府的财政投资和支持对于优化和验证更好的保健至关重要,并将有助于减轻疾病负担。•监管世界范围内对进入基于干细胞的临床试验的最小细胞操作的严格监管指南排除了在产品和工艺开发技术中开发替代方法的需要,这些方法可以很容易地转化为临床设置。
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引用次数: 4
Ivermectin for the Control of West Nile Virus Transmission 控制西尼罗病毒传播的伊维菌素
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.043
Nguyen C, Burton T, Kuklinski W, Gray M, Foy BD

Presently there are limited options for controlling the transmission of West Nile virus (WNV), including the use of larvicides and adulticides to target the mosquito vector. However, these methods are poorly-targeted, restricted to wealthy semi-urban and urban areas that are able to fund the efforts, and opposed in some communities due to toxicity concerns. This study evaluated the use of endectocide-treated bird feed to control WNV transmission by targeting the primary vector in Colorado, Culex tarsalis. Ivermectin susceptibility in C. tarsalis was first measured through ivermectin-spiked bloodmeals fed using membrane feeders, and the LC50 was determined to be 49.94 ng/ml (39.71-59.93 95% CI, n=988). Chickens were then fed ivermectin-treated feed to examine its safety and palatability, and mosquitoes were blood fed directly on the chickens to assess in vivo effects. Finally, ivermectin pharmokinetics were analyzed using vein blood from chickens as well the C. tarsalis that bloodfed on the chickens. A mixture of 200 mg ivermectin/kg of bird feed was determined to be a palatable and safe dose on which chickens would feed while also being effective in killing C. tarsalis in bioassays. Pharmacokinetic data from the in vivo tests produced conflicting results compared to in vitro blood feeds but drug was detected in chicken blood at concentrations that may be expected to affect C. tarsalis. Dosing, safety, and bioassays are currently being conducted in doves and sparrows. Additional studies are currently determining the effect of ivermectin on mortality in WNV-infected mosquitoes, as well as if ivermectin reduces WNV replication and transmission. Our study indicates that the use of ivermectin-treated bird feed could be a novel method of controlling WNV transmission.

目前控制西尼罗河病毒(WNV)传播的选择有限,包括使用杀幼虫剂和杀成虫剂来瞄准蚊子媒介。然而,这些方法的针对性很差,仅限于富裕的半城市和城市地区,这些地区有能力资助这些努力,并且由于毒性问题在一些社区遭到反对。本研究通过针对科罗拉多州的主要媒介库蚊(库蚊),评估了使用杀虫剂处理过的鸟饲料来控制西尼罗河病毒传播的效果。首次采用膜喂食器加伊维菌素血粉检测tarsalis对伊维菌素的敏感性,LC50为49.94 ng/ml (95% CI为39.71 ~ 59.93,n=988)。然后用伊维菌素处理过的饲料喂养鸡,以检验其安全性和适口性,并直接用血喂蚊子,以评估对鸡的体内影响。最后,利用鸡的静脉血液和以鸡为食的tarsalis对伊维菌素的药动学进行了分析。在生物测定中,每公斤禽鸟饲料中加入200毫克伊维菌素的混合物被确定为一种美味和安全的鸡饲料剂量,同时也能有效地杀死tarsalis。与体外血液饲料相比,体内试验的药代动力学数据产生了相互矛盾的结果,但在鸡血液中检测到的药物浓度可能会影响tarsalis。目前正在鸽子和麻雀中进行给药、安全性和生物测定。其他研究目前正在确定伊维菌素对西尼罗河病毒感染蚊子死亡率的影响,以及伊维菌素是否能减少西尼罗河病毒的复制和传播。我们的研究表明,使用伊维菌素处理的鸟类饲料可能是控制西尼罗河病毒传播的一种新方法。
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引用次数: 3
Alphavirus E1 Glycoprotein-Liposome-Nucleic Acid Complexes Protect Mice from Lethal Challenge with Multiple Alphaviruses 甲病毒E1糖蛋白-脂质体-核酸复合物保护小鼠免受多种甲病毒的致命攻击
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.055
Rico A , Phillips A , Schountz T , Toth A , Jarvis D , Powers A , Olson K

Alphaviruses are globally distributed, mosquito borne pathogens that cause death and disease in vertebrates, including humans. Therapeutics to combat alphaviral disease are non-existant and only a handful of IND status vaccines are available. Of the available vaccines most are associated with a poor immunological response and a high rate of reactivity, and none protects against more than a single alphavirus species. We designed and tested novel alphavirus vaccines comprised of the E1 glycoproteins of western equine encephalitis virus (WEEV) or Venezuelan equine encephalitis virus (VEEV). Immunization with cationic lipid nucleic acid complexes (CLNCs) and alphavirus E1ecto mixture (lipid-antigen-nucleic acid complexes:LANACs) provided significant protection in mice challenged with either WEEV, VEEV or eastern equine encephalitis virus (EEEV) regardless of challenge route. LANAC immunized mice mount a strong humoral immune response lacking neutralizing antibody. Passive transfer of immune sera from LANAC immunized mice to non-immunized mice confers protection to challenge, indicating that non-neutralizing antibody is sufficient for protection. In summary, our LANAC vaccine has both therapeutic and prophylactic potential and is able to offer protection against distinct alphavirus species irrespective of the route of infection.

甲病毒是全球分布的蚊媒病原体,可导致包括人类在内的脊椎动物死亡和疾病。目前还不存在对抗甲型病毒疾病的治疗方法,只有少数IND状态的疫苗可用。在现有的疫苗中,大多数与免疫反应差和反应率高有关,而且没有一种疫苗能预防一种以上的甲病毒。我们设计并检测了由西部马脑炎病毒(WEEV)或委内瑞拉马脑炎病毒(VEEV) E1糖蛋白组成的新型甲病毒疫苗。用阳离子脂质核酸复合物(clnc)和甲病毒E1ecto混合物(脂质-抗原-核酸复合物:LANACs)免疫,无论攻毒途径如何,对WEEV、VEEV或东部马脑炎病毒(EEEV)攻毒的小鼠均有显著的保护作用。LANAC免疫小鼠在缺乏中和抗体的情况下产生强烈的体液免疫反应。LANAC免疫小鼠的免疫血清被动转移到未免疫小鼠身上,对攻击具有保护作用,表明非中和抗体足以起到保护作用。总之,我们的LANAC疫苗具有治疗和预防潜力,并且无论感染途径如何,都能够提供针对不同甲型病毒种类的保护。
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引用次数: 0
Simian varicella virus is present in skin tissue of rhesus macaques after experimental reactivation 猴水痘病毒存在于恒河猴皮肤组织经实验再激活
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.039
Miller A , Traina-Dorge V , Blackmon A , Wellish M , Deharo E , Gilden D , Mahalingam R

Varicella zoster virus (VZV) causes varicella (chickenpox), establishes latency in ganglia and reactivates decades later to produce zoster in the elderly. Clinical, pathological, immunological and virological features of simian varicella virus (SVV) infection of primates parallel human VZV infection. Primary SVV infection of primates, cause varicella, after which virus becomes latent in ganglionic neurons and reactivates upon social and environmental stress. Five rhesus macaques were infected intrabronchially with 4.0x105 pfu of SVV. Two weeks later, the monkeys developed varicella rash. Twenty months later four of the monkeys were treated once with a 50 mg/kg of anti-CD4 antibody. All 5 monkeys developed zoster rash, 7–55 days after the treatment. Punch biopsies of the skin rash were analyzed for the presence of SVV antigens by immunohistochemistry and immunofluorescence. SVV ORF 63 protein and glycoproteins gH and L were detected in sweat glands in skin from all 5 monkeys. Presence of SVV in the β-3-tubilin-positive nerve endings in affected skin suggested possible route of skin infection during zoster.

水痘带状疱疹病毒(VZV)引起水痘(水痘),在神经节建立潜伏期,并在几十年后重新激活,在老年人中产生带状疱疹。灵长类猴水痘病毒(SVV)感染的临床、病理、免疫学和病毒学特征与人类水痘病毒感染相似。灵长类动物的原发性SVV感染可引起水痘,之后病毒潜伏在神经节神经元中,并在社会和环境压力下重新激活。5只恒河猴支气管内感染4 × 105 pfu的SVV。两周后,猴子出现水痘疹。20个月后,其中4只猴子接受了一次50毫克/公斤的抗cd4抗体治疗。治疗后7-55天,5只猴子均出现带状疱疹。用免疫组织化学和免疫荧光法分析皮疹穿刺活检中SVV抗原的存在。5只猴子皮肤汗腺均检测到SVV orf63蛋白和糖蛋白gH、L。感染皮肤中β-3-tubilin阳性神经末梢存在SVV提示带状疱疹期间皮肤感染的可能途径。
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引用次数: 0
Poliovirus and Group C Enteroviruses: Knowledge Gaps Relevant to Eradication 脊髓灰质炎病毒和C组肠病毒:与根除相关的知识空白
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.061
Barton DJ, Kempf BJ, Cooper DA.

Poliovirus eradication is one of the most challenging public health endeavors in modern times (www.polioeradication.org). Social, political, economic & scientific factors have made this goal elusive. When eradication goals were first established in 1988, there was little appreciation of viral RNA recombination, enterovirus species groups and their relevance to eradication. Now, it is clear that RNA recombination between live-attenuated vaccine strains of poliovirus and non-polio group C enteroviruses results in circulating vaccine-derived polioviruses (cVDPV) and corresponding outbreaks of paralytic disease, a significant obstacle to eradication. By understanding enterovirus species groups, it becomes clear that poliovirus capsid proteins can be eradicated; however, the remainder of poliovirus RNA genomes will survive indefinitely in other group C enteroviruses. To help address these obstacles to eradication, the Barton lab studies molecular features of 3Dpol involved in viral RNA replication and recombination. A dsRNA clamp of 3Dpol that holds RNA products of replication as they exit the polymerase plays important roles in the polyadenylation of viral RNA, the fidelity of RNA replication, ribavirin sensitivity and viral RNA recombination. In other experiments, we identified a group C enterovirus RNA involved in the inhibition of ribonuclease L, an antiviral endoribonuclease. The RNase L ciRNA plays important but largely unexplored roles in pathogenesis. Using novel deep sequencing methods, we found that RNase L targets viral RNA encoding neutralizing epitopes of capsid proteins, sparing most other regions of viral RNA. These data suggest an important interplay between neutralizing antibodies, neutralization escape mutations and antiviral endoribonucleases. A better understanding of viral RNA recombination, enterovirus species groups and antiviral endoribonucleases should help achieve and maintain poliovirus eradication.

根除脊髓灰质炎病毒是现代最具挑战性的公共卫生努力之一(www.polioeradication.org)。社会、政治、经济;科学因素使得这一目标难以实现。当1988年首次确定根除目标时,很少有人认识到病毒RNA重组、肠道病毒种类群及其与根除的相关性。现在,很明显,脊髓灰质炎病毒减毒活疫苗株和非脊髓灰质炎C组肠病毒之间的RNA重组导致循环疫苗衍生脊髓灰质炎病毒(cVDPV)和相应的麻痹性疾病暴发,这是根除脊髓灰质炎的一个重大障碍。通过了解肠道病毒种类群,脊髓灰质炎病毒衣壳蛋白可以被根除变得很清楚;然而,其余的脊髓灰质炎病毒RNA基因组将在其他C组肠病毒中无限期存活。为了帮助消除这些障碍,Barton实验室研究了3Dpol参与病毒RNA复制和重组的分子特征。3Dpol的dsRNA钳在RNA产物离开聚合酶时将其固定在一起,在病毒RNA的多聚腺苷化、RNA复制的保真度、利巴韦林敏感性和病毒RNA重组等方面发挥重要作用。在其他实验中,我们发现C组肠病毒RNA参与核糖核酸酶L的抑制,核糖核酸酶L是一种抗病毒核糖核酸内酶。RNase L ciRNA在发病机制中起着重要的作用,但在很大程度上尚未被探索。利用新的深度测序方法,我们发现RNase L靶向编码衣壳蛋白中和表位的病毒RNA,从而保留了病毒RNA的大多数其他区域。这些数据表明,中和抗体、中和逃逸突变和抗病毒核糖核酸内切酶之间存在重要的相互作用。更好地了解病毒RNA重组、肠道病毒种类群和抗病毒核糖核酸内切酶,应该有助于实现和维持脊髓灰质炎病毒的根除。
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引用次数: 0
Bardet–Biedl syndrome: A model for translational research in rare diseases Bardet-Biedl综合征:罕见疾病转化研究的一个模型
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.06.001
Robert M. Haws , Anthony D. Krentz , Rachel V. Stankowski , Robert D. Steiner

Bardet–Biedl syndrome (BBS) is a rare, multisystemic, genetic disease and member of a group of disorders called ciliopathies. This syndrome provides a mechanistic model for ciliopathies that may also extend to common disorders with complex inheritance patterns, including diabetes mellitus and obesity. Dysregulation of signaling pathways altering the cellular response to the extracellular environment is primary to the ciliopathies and characteristic of BBS. As BBS-centered translational research moves forward, innovative advances provide opportunities to improve the care of individuals with BBS and other rare diseases as well as common related conditions. This review aims to highlight the current understanding of the mechanisms underlying BBS and opportunities for advancing the care of individuals with rare diseases.

Focal points

  • Bedside: understanding the multi-dimensional manifestations of ciliopathies, specifically Bardet–Biedl Syndrome (BBS) as a model ciliopathy, will accelerate research into therapeutic targets for ciliopathies, allowing for improved therapies for individuals with these debilitating disorders.

  • Benchside: elucidating the molecular mechanisms of BBS is likely to increase the chance of discovering novel therapeutic approaches that may be generalizable to other ciliopathies and perhaps to common related disorders, such as obesity and diabetes mellitus.

  • Industry: application of known drugs to new indications, or drug repositioning, and development of novel therapeutics, including gene therapies in BBS, may open new avenues for therapeutic discovery and development.

  • Community: rare diseases affect millions of individuals throughout the world with significant impact on quality of life and longevity. The development of multidisciplinary clinics for BBS and effective implementation of a rare disease registry provides a model for advancing the care of individuals with rare diseases.

  • Government and Regulatory Agencies: the importance of rare disease research and the impact of that research on common disorders should be supported with adequate funding and resources. Understanding the molecular pathways underlying ciliopathies, such as BBS, and advancement of translational medicine in ciliopathies will have far reaching societal benefits

Bardet-Biedl综合征(BBS)是一种罕见的多系统遗传性疾病,是纤毛病的一种。这种综合征为纤毛病提供了一种机制模型,纤毛病也可能扩展到具有复杂遗传模式的常见疾病,包括糖尿病和肥胖症。改变细胞对细胞外环境反应的信号通路失调是引起纤毛病和BBS特征的主要原因。随着以BBS为中心的转化研究的推进,创新的进步为改善BBS患者和其他罕见疾病以及常见相关疾病患者的护理提供了机会。这篇综述旨在强调目前对BBS潜在机制的理解,以及促进罕见病患者护理的机会。•床边:了解纤毛病的多维表现,特别是Bardet-Biedl综合征(BBS)作为一种典型纤毛病,将加速对纤毛病治疗靶点的研究,从而改善对这些衰弱性疾病患者的治疗方法。•实验:阐明BBS的分子机制可能会增加发现新的治疗方法的机会,这种方法可能适用于其他纤毛病,也可能适用于常见的相关疾病,如肥胖和糖尿病。•工业:将已知药物应用于新的适应症,或重新定位药物,以及开发新的治疗方法,包括BBS的基因治疗,可能为治疗发现和开发开辟新的途径。•社区:罕见疾病影响到全世界数以百万计的人,对生活质量和寿命产生重大影响。多学科门诊的发展和罕见病登记的有效实施为促进罕见病患者的护理提供了一种模式。•政府和监管机构:罕见病研究的重要性以及罕见病研究对常见疾病的影响应得到充足的资金和资源支持。了解纤毛病(如BBS)的分子通路,推进纤毛病的转化医学,将具有深远的社会效益
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引用次数: 8
Structure-based Engineering of Sabin 2 Poliovirus Polymerase to Alter Replication Fidelity 基于结构的sabin2脊髓灰质炎病毒聚合酶工程改变复制保真度
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.070
Keith A, Campagnola S, Peersen O.

Picornaviruses cause a wide range of ailments, including myocarditis, poliomyelitis, and vesicular lesion type diseases. Excellent vaccines exist for several of them, and the development of the live-attenuated oral polio vaccine (OPV) provided an efficient and cost-effective avenue for successful poliovirus eradication in the majority of the world. However, one hurdle for developing successful live-attenuated vaccines lies with the viral RNA-dependent-RNA-polymerase (RdRP) enzyme whose low replication fidelity allows for reversion of attenuated viruses to disease causing variants. Improving the replication fidelity of RdRPs is an attractive avenue for virus attenuation because it may curtail such reversion issues. We have previously solved the crystal structures of several picornaviral polymerase-RNA complexes that show the structural changes taking place within these polymerases during active site closure and catalysis (Gong et al., 2010, 2013). Based on this, we engineered a panel of fidelity variant coxsackievirus B3 polymerases that caused reduced infectivity and attenuated virus growth in mice (Gnädig et al., PNAS, 2012). We hypothesize that such modulation of polymerase fidelity via structure based protein engineering can provide an effective platform to improve the design of live-attenuated vaccines. To investigate this further we have generated over a dozen mutations in the poliovirus Sabin 2 strain polymerase and carried out in vitro biochemical assays to show that these can either increase or decrease polymerase fidelity while having minor effects on elongation rates and processivity. The fidelity modulation can arise from single point mutations, multi-site mutations that replace entire groups of interacting residues, or from grafting in structurally homologous sequences from related polymerases. The data suggests mutations in the palm domain of the poliovirus RdRP can serve as efficient fidelity modulation sites for protein engineering purposes, and we are now seeking to test these variant polymerases in an infectious virus context.

小核糖核酸病毒引起广泛的疾病,包括心肌炎、脊髓灰质炎和水疱病变型疾病。其中有几种疫苗是优良的,口服脊髓灰质炎减毒活疫苗(OPV)的开发为世界上大多数国家成功根除脊髓灰质炎病毒提供了一种有效和具有成本效益的途径。然而,开发成功减毒活疫苗的一个障碍在于病毒rna依赖性rna聚合酶(RdRP)酶,其低复制保真度允许将减毒病毒逆转为引起疾病的变体。提高RdRPs的复制保真度是病毒衰减的一个有吸引力的途径,因为它可以减少这种逆转问题。我们之前已经解决了几种小核糖核酸病毒聚合酶- rna复合物的晶体结构,显示了这些聚合酶在活性位点关闭和催化过程中发生的结构变化(Gong et al., 2010, 2013)。基于此,我们设计了一组保真度变异柯萨奇病毒B3聚合酶,可降低小鼠的传染性和病毒生长(Gnädig等人,PNAS, 2012)。我们假设,通过基于结构的蛋白质工程对聚合酶保真度的调节可以为改进减毒活疫苗的设计提供有效的平台。为了进一步研究这一点,我们在脊髓灰质炎病毒Sabin 2株聚合酶中产生了十多个突变,并进行了体外生化分析,表明这些突变可以增加或降低聚合酶的保真度,而对延伸率和加工率的影响很小。保真度调节可以由单点突变、取代整个相互作用残基群的多位点突变或相关聚合酶在结构上同源序列的嫁接引起。这些数据表明,脊髓灰质炎病毒RdRP掌区突变可以作为蛋白质工程目的的有效保真度调节位点,我们现在正在寻求在感染性病毒背景下测试这些变异聚合酶。
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引用次数: 0
Sterilization and Disposal of Agricultural Quarantine Waste 农业检疫废弃物的灭菌与处理
Pub Date : 2015-05-01 DOI: 10.1016/j.nhtm.2015.07.054
Laura Pulscher , Erin McNulty , Amy V. Nalls , Craig Ramsey , Candace K. Mathiason

Approximately 150 million people and almost $40 billion worth of agricultural commodities go through U.S. international ports annually. Ports seize animal and plant products potentially contaminated with high risk diseases that then must be decontaminated before entering the waste stream. Currently, there are only 3 methods of decontamination accepted by the Animal Plant and Health Inspection Service at U.S. ports and borders including incineration, high temperature cooking, and discharge of ground waste as sewage. In this study we assess the efficacy of a relatively new decontamination technology, alkaline digestion, to mitigate infectious agents. Transmissible Spongiform Encephalopathies (TSEs), a member of the protein misfolding diseases (ex: Alzheimer’s and Parkinson’s Diseases), were chosen as the infectious agent for this study because they rank as the hardest to kill microbe/pathogen, affect both human and animal species worldwide and are shed by infected hosts into the environment establishing highly infectious biota. Chronic wasting disease (CWD), an emerging TSE of cervid species (deer, elk, moose) in North America, has recently been spotlighted as a potential concern for European countries, and recapitulates human and animal TSE pathogenesis and shedding. For these reasons CWD is ideal for mitigation studies. We processed CWD positive and negative materials by alkaline digestion under standard temperature and pressure at time intervals of 2, 4, and 6 h. Samples were retrieved after digestion, were neutralized and inoculated intracerebrally into transgenic mice expressing the cervid protein to determine remaining prion infectivity. In addition, the samples (pre and post alkaline digestion) were tested for amplification competent prions by Protein Misfolding Cyclic Amplification (PMCA). Preliminary results suggest a lack of amplification competent prions in samples processed by alkaline digestion at 2, 4, and 6 h cycles as compared to nondigested samples. This work will provide a basis for future studies designed to unravel the mechanisms associated with the ability of prions to bind surfaces enhancing prion mitigation strategies for TSEs and by extension, other protein misfolding diseases.

每年大约有1.5亿人和价值近400亿美元的农产品通过美国的国际港口。港口没收可能被高风险疾病污染的动植物产品,然后必须在进入废物流之前进行净化。目前,在美国港口和边境,动植物卫生检疫局只接受三种净化方法,包括焚烧、高温烹饪和将地面废物作为污水排放。在这项研究中,我们评估了一种相对较新的去污技术,碱性消化,以减轻传染性病原体的功效。传染性海绵状脑病(TSEs)是蛋白质错误折叠疾病(如阿尔茨海默病和帕金森病)的一种,被选为本研究的传染因子,因为它们是最难杀死的微生物/病原体,影响全世界的人类和动物物种,并由受感染的宿主传播到环境中,建立了高度传染性的生物群。慢性消耗性疾病(CWD)是一种发生在北美鹿科动物(鹿、麋鹿、驼鹿)身上的新型传染性脑病,最近已成为欧洲国家关注的潜在问题,它概括了人类和动物的脑病发病机制和脱落。由于这些原因,CWD是缓解研究的理想选择。我们将CWD阳性和阴性材料分别在标准温度和压力下碱性消化,时间间隔分别为2、4和6小时。消化后回收样品,中和后接种于表达宫颈蛋白的转基因小鼠脑内,以测定剩余的朊病毒传染性。此外,通过蛋白错误折叠循环扩增(PMCA)检测样品(碱消化前和碱消化后)的扩增能力。初步结果表明,与未消化的样品相比,经碱性消化处理的样品在2、4和6小时循环时缺乏扩增能力的朊病毒。这项工作将为未来的研究奠定基础,这些研究旨在揭示与朊病毒结合表面能力相关的机制,增强朊病毒缓解tse以及其他蛋白质错误折叠疾病的策略。
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引用次数: 0
Translational Medicine definition by the European Society for Translational Medicine 欧洲转化医学协会对转化医学的定义
Pub Date : 2015-03-01 DOI: 10.1016/j.nhtm.2014.12.002
Randall J. Cohrs, Tyler Martin, Parviz Ghahramani, Luc Bidaut, Paul J. Higgins, Aamir Shahzad

Progress in the field of translational medicine (TM) within the last decade attests to the importance of the TM initiative in the context of more traditional academic health science centers. In many instances, these advancements have taken place without a clear definition of TM, which signifies the urgent need for a clear, consensus definition that would serve as an integrative blueprint for the various “versions” of TM definition. The various existing definitions are reflecting the diversity of institutional translational research and deployment programs. The European Society for Translational Medicine (EUSTM) is a global non-profit and neutral society whose principal objective is to enhance world-wide healthcare through the specific development and eventual clinical implementation and exploitation of TM-based approaches, resources and expertise. In this position article, the EUSTM defines TM as an interdisciplinary branch of the biomedical field supported by three main pillars: benchside, bedside and community. The goal of TM is to combine disciplines, resources, expertise, and techniques within these pillars to promote enhancements in prevention, diagnosis, and therapies. Accordingly, TM is a highly interdisciplinary field, the primary goal of which is to coalesce assets of various natures within the individual pillars in order to improve the global healthcare system significantly.

在过去的十年中,在转化医学(TM)领域的进展证明了TM倡议在更传统的学术卫生科学中心的背景下的重要性。在许多情况下,这些进步是在没有明确的TM定义的情况下发生的,这意味着迫切需要一个明确的、一致的定义,作为TM定义的各种“版本”的综合蓝图。现有的各种定义反映了机构转化研究和部署计划的多样性。欧洲转化医学学会(EUSTM)是一个全球性的非营利性和中立的社会,其主要目标是通过具体开发和最终临床实施和利用基于医学的方法、资源和专业知识来加强世界范围内的医疗保健。在这篇立场文章中,EUSTM将TM定义为生物医学领域的一个跨学科分支,由三个主要支柱支撑:临床、临床和社区。TM的目标是将这些支柱中的学科、资源、专业知识和技术结合起来,以促进预防、诊断和治疗的加强。因此,TM是一个高度跨学科的领域,其主要目标是在各个支柱内整合各种性质的资产,以显著改善全球医疗保健系统。
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引用次数: 121
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New horizons in translational medicine
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