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Invention, innovation, and commercialisation in British biophysics. 英国生物物理学的发明、创新和商业化。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-07-16 eCollection Date: 2025-08-01 DOI: 10.1007/s12551-025-01330-w
Jack Shepherd, Mark C Leake

British biophysics has a tradition of scientific invention and innovation, resulting in new technologies transforming biological insight, such as rapid DNA sequencing, super-resolution and label-free microscopy, high-throughput and single-molecule bio-sensing, and bio-inspired synthetic materials. Some advances were established through democratised platforms and many have biomedical success, a key example involving the SARS-CoV-2 spike protein during the COVID-19 pandemic. Here, three UK labs made crucial contributions revealing how the spike protein targets human cells and how therapies of vaccines and neutralising nanobodies work, enabled largely through biophysical innovations of cryo-electron microscopy. Here, we discuss leading-edge innovations which resulted from discovery-led British "Physics of Life" research (capturing blends of physical-life sciences research in the UK including biophysics and biological physics) and have matured into wide-reaching sustainable commercial ventures enabling translational impact. We describe the biophysical science which led to these academic spinouts, presenting the scientific questions that were addressed through innovating new techniques and approaches. We consider these examples through the lens of opportunities and challenges for academic biophysics research in partnership with British industry. We highlight how commercial breakthroughs have emerged organically from fundamental research rather than from technology-first approaches but also discuss lessons to learn from past failures. Finally, we propose recommendations concerning future resourcing and structuring of UK biophysics research and the training and support of its researchers to ensure that UK plc punches above its weight in biophysics innovation and a need to educate the policymakers and public that an absence of basic science impoverishes innovation.

英国生物物理学具有科学发明和创新的传统,产生了改变生物学洞察力的新技术,例如快速DNA测序,超分辨率和无标签显微镜,高通量和单分子生物传感以及生物启发合成材料。一些进展是通过民主化平台取得的,许多进展在生物医学上取得了成功,一个关键的例子是在COVID-19大流行期间涉及SARS-CoV-2刺突蛋白。在这里,三个英国实验室做出了重要贡献,揭示了刺突蛋白如何靶向人类细胞,以及疫苗疗法和中和纳米体如何起作用,这主要是通过冷冻电子显微镜的生物物理创新实现的。在这里,我们讨论了前沿创新,这些创新源于以发现为主导的英国“生命物理学”研究(捕获英国物理与生命科学研究的融合,包括生物物理学和生物物理学),并已成熟为具有广泛影响的可持续商业企业,能够产生转化影响。我们描述了导致这些学术分支的生物物理科学,提出了通过创新新技术和方法解决的科学问题。我们通过与英国工业界合作的学术生物物理学研究的机遇和挑战来考虑这些例子。我们强调了商业突破是如何从基础研究中有机地出现的,而不是从技术优先的方法中出现的,但也讨论了从过去的失败中吸取的教训。最后,我们就英国生物物理研究的未来资源和结构以及研究人员的培训和支持提出了建议,以确保英国生物物理研究所在生物物理创新方面发挥其应有的作用,并需要教育决策者和公众,缺乏基础科学会使创新变得贫瘠。
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引用次数: 0
QSAR and machine learning methods for prediction of albumin-ligand binding. 预测白蛋白配体结合的QSAR和机器学习方法。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-07-16 eCollection Date: 2025-10-01 DOI: 10.1007/s12551-025-01333-7
D R Khaibrakhmanova, I A Sedov

Serum albumin is the most abundant protein found in human and mammalian blood plasma. It plays a crucial role in the transport and delivery of various molecules, including drugs. The affinity of small molecule drugs to albumin affects their ADME properties and overall efficacy. Hence, predictive models for albumin-ligand binding constants are of interest for computer-aided drug design. Due to the vast number of potential binding modes to albumin, the application of structure-based approaches relying on calculations of the binding free energy is challenging, while ligand-based QSAR and machine learning approaches can be trained to achieve rather good performance even for structurally diverse molecule sets. We consider the existing albumin affinity datasets and the numerous models designed to predict the affinity, which are based on various machine learning techniques and use different types of molecular descriptors. The transferability of the models to plasma protein binding values is discussed.

血清白蛋白是人类和哺乳动物血浆中含量最多的蛋白质。它在包括药物在内的各种分子的运输和传递中起着至关重要的作用。小分子药物与白蛋白的亲和力影响其ADME特性和整体疗效。因此,白蛋白配体结合常数的预测模型对计算机辅助药物设计很有意义。由于白蛋白的潜在结合模式非常多,基于结构的方法的应用依赖于结合自由能的计算是具有挑战性的,而基于配体的QSAR和机器学习方法即使对于结构多样的分子集也可以获得相当好的性能。我们考虑了现有的白蛋白亲和力数据集和设计用于预测亲和力的众多模型,这些模型基于各种机器学习技术并使用不同类型的分子描述符。讨论了模型对血浆蛋白结合值的可转移性。
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引用次数: 0
Rapid changes in hydrostatic pressure as a probe for correlating function of purified proteins with their measured activity in living cells. 静水压力的快速变化作为纯化蛋白的功能与活细胞中测定的活性之间关系的探针。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-07-15 eCollection Date: 2025-08-01 DOI: 10.1007/s12551-025-01331-9
Daniel P Mulvihill, Michael A Geeves

Hydrostatic pressure (HP) has long been used to perturb protein and membrane structures and to alter their interactions with binding partners in a fully reversible manner. HP has also long been used to perturb molecular structures in living cells, where it can alter cytoskeleton dynamics and cellular signalling pathways and to stall cell division in a wide variety of cell types. HP can be applied and removed in a fraction of a second and is transmitted through tissue at the speed of sound; thus, rapid changes in HP can be very useful to correlate the behaviour of isolated macromolecules with the same molecules within living cells. Despite its usefulness, HP has not found wide use among researchers, mainly because of the need for specialist equipment. This largely reflects the use of high HP (≥ 1000 atmospheres) by the majority of practitioners. While these high pressures have provided insights into protein denaturation, membrane reorganisation, and sterilisation of bacteria and viruses in medicine and food, here we will focus on the uses of moderate HP (< 200 atmospheres) where the engineering and safety issues are less significant. At these lower pressures, HP alters the water shells at molecular interfaces. We outline here the background of the methods used and some of the simple adaptations required to laboratory equipment to allow HP studies and give some examples of its use for studying isolated proteins and the same proteins in living cells.

长期以来,静水压力(HP)一直被用于扰乱蛋白质和膜结构,并以完全可逆的方式改变它们与结合伙伴的相互作用。HP长期以来也被用于扰乱活细胞中的分子结构,它可以改变细胞骨架动力学和细胞信号通路,并在多种细胞类型中阻止细胞分裂。HP可以在几分之一秒内施用和去除,并以声速通过组织传播;因此,HP的快速变化可以非常有用地将分离的大分子的行为与活细胞内的相同分子联系起来。尽管它很有用,但惠普并没有在研究人员中得到广泛使用,主要是因为需要专业设备。这在很大程度上反映了大多数从业者使用高HP(≥1000个大气压)。虽然这些高压为蛋白质变性、膜重组以及药物和食品中细菌和病毒的灭菌提供了见解,但在这里,我们将重点关注中等HP (
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引用次数: 0
Biomimetic supramolecular systems: noncovalent strategy in self-assembly, functional activity and drug delivery. 仿生超分子系统:自组装、功能活性和药物传递中的非共价策略。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-07-12 eCollection Date: 2025-10-01 DOI: 10.1007/s12551-025-01332-8
Lucia Zakharova, Ruslan Kashapov, Rushana Kushnazarova, Yuliya Razuvaeva, Elena Zhiltsova, Alla Mirgorodskaya, Oleg Sinyashin

The review focuses on biomimetic approach to the designing multifunctional nanosystems and their application in modern nanotechnology, particularly in the fields of nanomedicine, enzymology, catalysis, and drug delivery. The throughline integrating the chapters of the review is the family of amphiphilic compounds, including surfactants, macrocycles, and mixed compositions. These are very attractive building blocks due to their ability to cooperative or stoichiometric noncovalent interactions with the formation of smart supramolecular assemblies responsive to external stimulus, demonstrating tunable structural and functional behavior. Special attention is devoted to mixed micellar systems, metallosurfactants and macrocycles of different classes, including cyclodextrins, calixarenes, cucurbiturils, pillararenes. These amphiphilic assemblies are widely used as micellar nanocontainers for drug solubilization, biomimetic nanocatalysts for hydrolysis and oxidation-reduction reactions, and artificial ion channels. Amphiphilic molecules, due to their structural similarity to lipid molecules, can integrate with lipid membranes, modifying their properties. This makes amphiphiles important for developing drug delivery systems that have improved bioavailability, stability, prolonged circulation time, and the ability to overcome biological barriers, ultimately improving the effectiveness of pharmacotherapy.

综述了仿生技术在多功能纳米系统设计中的应用及其在现代纳米技术中的应用,特别是在纳米医学、酶学、催化和给药领域。贯穿全文的是两亲性化合物家族,包括表面活性剂、大环和混合组合物。这些是非常有吸引力的构建模块,因为它们能够与响应外部刺激的智能超分子组装形成合作或化学计量非共价相互作用,表现出可调的结构和功能行为。特别关注混合胶束体系、金属表面活性剂和不同类别的大环,包括环糊精、杯芳烃、葫芦烷、柱芳烃。这些两亲组合物被广泛应用于药物增溶的胶束纳米容器、水解和氧化还原反应的仿生纳米催化剂以及人工离子通道。两亲性分子由于其结构与脂质分子相似,可以与脂质膜结合,从而改变其性质。这使得两亲体对于开发具有提高生物利用度、稳定性、延长循环时间和克服生物屏障能力的药物传递系统具有重要意义,最终提高药物治疗的有效性。
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引用次数: 0
Biophysical Reviews: a call for nominations to the 2026 Michèle Auger Award. 生物物理评论:2026年米歇尔·奥格奖提名征集。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-07-01 eCollection Date: 2025-06-01 DOI: 10.1007/s12551-025-01327-5
Wilma K Olson

This editorial describes an open the call for nominations to the 2026 Michéle Auger Award for Young Scientists' Independent Research-the single award administered by Biophysical Reviews.

这篇社论描述了2026年青年科学家独立研究michsamle Auger奖的公开提名,该奖项由《生物物理评论》管理。
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引用次数: 0
The rheology and interfacial properties of biomolecular condensates. 生物分子凝聚物的流变学和界面特性。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-06-30 eCollection Date: 2025-06-01 DOI: 10.1007/s12551-025-01326-6
Huan Wang, Zheng Shi

Biomolecular condensates are increasingly recognized as central regulators of numerous cellular processes. The bulk rheology of condensates (e.g., viscoelasticity) balances molecular mobility with structural stability, while the interfacial properties of condensates (e.g., interfacial tension) regulate condensate growth and their interactions with other cellular structures. Here, we review the functional roles of condensate rheology and interfacial properties, as well as diseases associated with their dysregulation. By summarizing emerging methodologies and quantitative measurements of condensate viscoelasticity and interfacial tension in the literature, we highlight key regulators of condensate material properties and discuss their implications in biology.

生物分子凝聚物越来越被认为是许多细胞过程的中心调节因子。凝析油的整体流变学(如粘弹性)平衡了分子迁移率和结构稳定性,而凝析油的界面特性(如界面张力)调节了凝析油的生长及其与其他细胞结构的相互作用。在这里,我们回顾了凝析液流变学和界面特性的功能作用,以及与它们失调相关的疾病。通过总结文献中凝聚态粘弹性和界面张力的新兴方法和定量测量,我们强调了凝聚态材料特性的关键调节因子,并讨论了它们在生物学中的意义。
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引用次数: 0
Biophysical Reviews: worldwide advances in biophysics. 生物物理评论:世界范围内生物物理学的进展。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-06-25 eCollection Date: 2025-06-01 DOI: 10.1007/s12551-025-01325-7
Wilma K Olson

This Editorial introduces the contents of Volume 17, Issue 3 of Biophysical Reviews, the official journal of the International Union for Pure and Applied Biophysics (IUPAB). This Issue contains 14 contributions. The broad scope of the articles and the geographically widespread locations of the contributing authors mirror the goals of IUPAB, namely to organize worldwide advancements, cooperation, communication, and education in biophysics.

这篇社论介绍了国际纯粹与应用生物物理学联合会(IUPAB)的官方期刊《生物物理评论》第17卷第3期的内容。本期共14篇投稿。文章的广泛范围和贡献作者的地理分布反映了IUPAB的目标,即组织世界范围内的生物物理学进步、合作、交流和教育。
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引用次数: 0
The SURFE2R (surface electrogenic event reader): from fundamental research to commercial product. SURFE2R(表面生电事件阅读器):从基础研究到商业产品。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-06-16 eCollection Date: 2025-06-01 DOI: 10.1007/s12551-025-01322-w
Ronald J Clarke

The purpose of this review is to describe the development of the Surface Electrogenic Event Reader (SURFE2R) instrument, from the discovery of its fundamental underlying principle of capacitive coupling of biological membranes in the late 1970s to the present-day commercial instrument, which since 2012 has been marketed by the company Nanion Technologies. The story of the SURFE2R's development is a prime example of the transfer of a concept from fundamental research into a commercial product for the benefit of society. The capacitive coupling detection method was first recognized and used in research into the reaction mechanism of the proton pump bacteriorhodopsin from purple membrane fragments of a Halobacterium. The modern instrument now has a much wider application to research on the mechanisms of pumps and transporters in general, in the screening of drugs targeting pumps and transporters, and in quantifying drug affinity to biological membranes. The instrument is, therefore, of potential interest to researchers in both academia and the pharmaceutical industry. Because the author has worked and interacted with most, if not all, of the scientists involved in the evolution of the SURFE2R, the article also provides personal insights into the lives and careers of the leading scientists involved: Peter Läuger, Ernst Bamberg, Klaus Fendler, Thiemo Gropp and Niels Fertig.

本综述的目的是描述表面生电事件读取器(SURFE2R)仪器的发展,从20世纪70年代末发现其生物膜电容耦合的基本基本原理到今天的商用仪器,自2012年起由Nanion Technologies公司上市。SURFE2R的开发故事是将基础研究概念转化为商业产品以造福社会的一个典型例子。电容偶联检测法首次被认可并应用于从盐杆菌紫色膜片段中提取质子泵细菌视紫红质反应机理的研究。现代仪器现在在研究泵和转运体的一般机制,筛选靶向泵和转运体的药物以及定量药物对生物膜的亲和力方面有了更广泛的应用。因此,该仪器对学术界和制药业的研究人员都有潜在的兴趣。由于作者与参与SURFE2R进化的大多数(如果不是全部的话)科学家都有过工作和互动,因此本文还提供了对参与其中的主要科学家的生活和职业的个人见解:Peter Läuger, Ernst Bamberg, Klaus Fendler, Thiemo Gropp和Niels Fertig。
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引用次数: 0
Practical measures for achieving greater alignment between scientific practice and meaningful research output. 在科学实践和有意义的研究成果之间实现更大一致性的实际措施。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-06-10 eCollection Date: 2025-06-01 DOI: 10.1007/s12551-025-01324-8
Damien Hall

With the rise of generative artificial intelligence, previous barriers to producing written content in the form of papers and grants are decreasing, resulting in a rapid rise in the level of submitted material. This opinion piece first describes a number of already existing structural problems within current scientific research practice that relate to publication output, managerial science styles, and the operation of national granting systems that are especially susceptible to further exploitation with the use of an artificial intelligence-based writing assistant. It then proceeds to offer a number of recommendations that may help to fix these problems, thereby creating better working environments and higher quality research output.

Supplementary information: The online version contains supplementary material available at 10.1007/s12551-025-01324-8.

随着生成式人工智能的兴起,以前以论文和拨款形式产生书面内容的障碍正在减少,导致提交材料的水平迅速上升。这篇观点文章首先描述了当前科学研究实践中已经存在的一些结构性问题,这些问题与出版物产出、管理科学风格和国家资助系统的运作有关,这些问题特别容易受到使用基于人工智能的写作助手的进一步利用。然后,它继续提供一些可能有助于解决这些问题的建议,从而创造更好的工作环境和更高质量的研究成果。补充信息:在线版本包含补充资料,提供地址为10.1007/s12551-025-01324-8。
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引用次数: 0
Modular protein frameworks via supramolecular synthons. 通过超分子合成子构建模块化蛋白质框架。
IF 3.7 Q1 BIOPHYSICS Pub Date : 2025-06-09 eCollection Date: 2025-08-01 DOI: 10.1007/s12551-025-01323-9
Niamh M Mockler, Peter B Crowley

Controlled protein assembly and protein crystal engineering are routes to new types of biomaterials. In this review, we examine how crystal engineering concepts, including polymorph searching, molecular tectonics and supramolecular synthons, can be adapted and applied in protein-based systems. We explore 'mix-and-match' approaches, as established with modular frameworks that combine interchangeable components. We review the numerous current methodologies in protein assembly and crystal engineering from (de novo) designed proteins to metal-mediated or ligand-mediated strategies. Commercially available synthetic receptors such as macrocycles are useful protein assembly mediators and are advantageous in their applicability to diverse protein targets. We highlight the use of calixarenes, cucurbiturils and proteins as building blocks (tectons), showing that reproducible inter-tecton structural units (synthons) have applications in directing protein assembly and crystal engineering.

控制蛋白质组装和蛋白质晶体工程是通往新型生物材料的途径。在这篇综述中,我们研究了晶体工程概念,包括多晶型搜索,分子构造和超分子合成子,如何适应和应用于基于蛋白质的系统。我们探索了“混合匹配”的方法,并结合了可互换组件的模块化框架。我们回顾了目前在蛋白质组装和晶体工程中的许多方法,从(从头开始)设计蛋白质到金属介导或配体介导的策略。商业上可获得的合成受体如大环是有用的蛋白质组装介质,并且在适用于各种蛋白质靶标方面具有优势。我们强调了杯芳烃、葫芦烷和蛋白质作为构建块(构造)的使用,表明可重复的构造间结构单元(synthons)在指导蛋白质组装和晶体工程中具有应用。
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引用次数: 0
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Biophysical reviews
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