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Cartridge-based nucleic amplification (CBNAAT)/GeneXpert test as a diagnostic modality for the detection of genital tuberculosis in women with infertility. 基于墨盒的核酸扩增(CBNAAT)/GeneXpert检测作为检测不孕妇女生殖器结核的诊断方式
Pub Date : 2025-07-11 eCollection Date: 2025-01-01 DOI: 10.3205/id000093
Chavini K Shaozae, Yogita Rai, Nishtha Jaiswal, Manoj B Jais

Background: Genital tuberculosis (GTB) is a significant etiological factor of infertility in developing countries such as India; however, it is frequently undiagnosed due to its asymptomatic nature and a lack of standardised protocols. This study aimed to compare the diagnostic efficacy of GeneXpert (CBNAAT) with Ziehl-Neelsen (ZN) staining, Mycobacterial Growth Indicator Tube (MGIT) liquid culture and histopathological examination (HPE). Additionally, the occurrence of GTB in infertile women aged between 18 and 45 years was also determined.

Methods: The study comprised 200 infertile women with suspected GTB. Endometrial biopsy samples were collected aseptically and subjected to ZN staining, MGIT liquid culture, GeneXpert testing and HPE and the results were analysed and compared. MGIT was considered the gold standard test in accordance with National TB Elimination Programme (NTEP) recommendations.

Results: There were 164 (82%) cases of primary infertility, and 36 (18%) cases of secondary infertility. Out of the 200 samples of endometrial biopsy (EB) specimens, the GeneXpert test detected two positive findings (1%), ZN staining detected two positive results (1%), and MGIT liquid culture as well as HPE detected one positive result (0.5%). GeneXpert demonstrated a sensitivity of 100% (confidence interval (CI) 2.50-100.00%), a specificity of 99.5% (CI 97.23-99.99%), a positive predictive value (PPV) of 50% (CI 12.40-87.60%), and a negative predictive value (NPV) of 100% (CI 98.15-100.00%), with liquid culture as reference. A significant agreement was found between the diagnostic procedures of MGIT and GeneXpert, with a kappa value of 0.66 and a p-value of 0.047 (significant p-value <0.05).

Conclusion: The present study is among the few that has utilised GeneXpert to aid in the diagnosis of female genital tuberculosis (FGTB). GeneXpert, being much faster and more feasible than conventional methods such as culture, could be incorporated into the standard evaluation of GTB.

背景:生殖器结核(GTB)是印度等发展中国家不孕症的重要病因;然而,由于其无症状的性质和缺乏标准化的方案,它经常被诊断出来。本研究旨在比较GeneXpert (CBNAAT)与Ziehl-Neelsen (ZN)染色、分枝杆菌生长指示管(MGIT)液体培养和组织病理学检查(HPE)的诊断效果。此外,还确定了18至45岁不孕妇女中GTB的发生率。方法:对200例怀疑患有GTB的不孕妇女进行研究。无菌收集子宫内膜活检标本,进行ZN染色、MGIT液体培养、GeneXpert检测和HPE检测,并对结果进行分析和比较。根据国家结核病消除规划(NTEP)的建议,MGIT被认为是金标准检测。结果:原发性不孕164例(82%),继发性不孕36例(18%)。在200个子宫内膜活检(EB)样本中,GeneXpert检测检测到2个阳性结果(1%),ZN染色检测到2个阳性结果(1%),MGIT液体培养和HPE检测到1个阳性结果(0.5%)。以液体培养为参考,GeneXpert的敏感性为100%(置信区间(CI) 2.50-100.00%),特异性为99.5% (CI 97.23-99.99%),阳性预测值(PPV)为50% (CI 12.40-87.60%),阴性预测值(NPV)为100% (CI 98.15-100.00%)。在MGIT和GeneXpert的诊断程序之间发现了显著的一致性,kappa值为0.66,p值为0.047(显著p值结论:本研究是少数使用GeneXpert来帮助诊断女性生殖器结核病(FGTB)的研究之一。GeneXpert比培养等传统方法更快、更可行,可纳入GTB的标准评价。
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引用次数: 0
Antibiotic susceptibility pattern of Campylobacter sp. isolated from human stool samples including comparison of ellipsoid test and broth microdilution for meropenem. 人粪便弯曲杆菌对美罗培南的药敏特征及椭球试验与肉汤微量稀释的比较。
Pub Date : 2025-06-17 eCollection Date: 2025-01-01 DOI: 10.3205/id000092
Juliane Fornefett, Sangeeta Banerji, Dagmar Rimek

Foodborne campylobacteriosis is the most common cause of bacterial gastroenteritis in Germany. Due to increasing antibiotic resistance in Campylobacter, data of isolates of human origin are published by the European Center for Disease Control and Prevention (ECDC)/European Food Safety Authority (EFSA). However, data on susceptibility to meropenem, an antibiotic of last resort, is not included. Therefore, the minimal inhibitory concentration (MIC) for meropenem was measured in 125 Campylobacter jejuni (Cj) and 57 Campylobacter coli (Cc) isolates isolated from human stool samples between 2020 and 2023, comparing ellipsoid test and broth microdilution. Additionally, we determined the susceptibility of 249 Cj and 84 Cc strains isolated between 2018 and 2023 to erythromycin, ciprofloxacin and oxytetracycline by disk diffusion according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST). For meropenem, the MIC results of 5% Campylobacter isolates were interpreted as resistant. Erythromycin resistance was found in none Cj versus 9 (11%) Cc isolates that were resistant to all three substances. Ciprofloxacin and oxytetracycline resistance were detected in 72 and 41% Cj, and 67 and 70% Cc isolates, respectively. Only 24% Cj and 13% C c isolates were susceptible to all three substances. The dual resistance of ciprofloxacin and oxytetracycline was the most common resistance pattern, observed in 37% Cj and 38% Cc isolates, respectively. None of the isolates was resistant to all four tested substances. Our data underline the need for susceptibility testing of Campylobacter to alternatively used antimicrobial substances in clinical laboratories. The ellipsoid test provides a good alternative for meropenem MIC testing, although borderline isolates should be confirmed using microdilution.

食源性弯曲菌病是德国细菌性肠胃炎最常见的原因。由于弯曲杆菌的抗生素耐药性不断增加,欧洲疾病控制和预防中心(ECDC)/欧洲食品安全局(EFSA)公布了人类来源的分离株数据。然而,对最后使用的抗生素美罗培南的敏感性数据并未包括在内。为此,本研究测定了2020 - 2023年间从人粪便中分离的125株空肠弯曲杆菌(Cj)和57株大肠弯曲杆菌(Cc)对美罗培南的最小抑菌浓度(MIC),并对椭球法和肉汤微量稀释法进行了比较。此外,我们根据欧洲抗菌药物敏感性试验委员会(EUCAST)的规定,采用圆盘扩散法测定了2018年至2023年间分离的249株Cj和84株Cc菌株对红霉素、环丙沙星和土霉素的敏感性。对于美罗培南,5%弯曲杆菌分离株的MIC结果被解释为耐药。无Cj菌株对红霉素耐药,9株(11%)Cc菌株对所有三种物质均耐药。对环丙沙星和土霉素的耐药率分别为72%和41% Cj和67%和70% Cc。只有24%的Cj和13%的C - C菌株对这三种物质敏感。其中环丙沙星和土霉素双耐药最为常见,分别为37% Cj和38% Cc菌株。没有一个分离株对所有四种被测物质都具有耐药性。我们的数据强调需要在临床实验室中对弯曲杆菌进行敏感性测试,以替代使用的抗菌物质。椭球试验为美罗培南MIC试验提供了一个很好的替代方案,尽管边界分离株应使用微量稀释来确认。
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引用次数: 0
(Fluoro)quinolone prescriptions for upper respiratory tract infections in the German outpatient sector: a health insurance claims analysis. (氟)喹诺酮处方上呼吸道感染在德国门诊部门:健康保险索赔分析。
Pub Date : 2025-05-27 eCollection Date: 2025-01-01 DOI: 10.3205/id000091
Birgit Arens, Helmut L'hoest, Alissa Wolf, Beata Hennig, Ursula Marschall, Irit Nachtigall

Background: Acute upper respiratory tract infections (URTIs) are frequent causes of medical treatment by general practitioners (GPs). In general, these are viral and self-limiting illnesses, but antibiotics are prescribed. In Germany, fluoroquinolones are not authorised for the indications pharyngitis, laryngitis, tonsillitis and acute bronchitis due to possible serious side effects. This analysis looks at fluoroquinolone prescriptions for URTI by GPs in 2022.

Methods: Frequency of fluoroquinolone prescriptions were analysed at case level and regionally using administrative insurance data from the German health insurance company BARMER. We included patients treated in GP practices without relevant concomitant diseases.

Results: In 2022, 25% (1,197,568/4,720,786) of insured persons with upper respiratory tract infections (URTI) were prescribed antibiotics. After excluding comorbidities and other risk factors such as previous hospitalisation, the prescription rate for uncomplicated URTIs was calculated to be 6% (80,786/1,365,646). Fluoroquinolones were given in 2.4% of antibiotic prescriptions (1,951/80,786). Nationwide, 3.7% of the GPs prescribed fluoroquinolones, most frequently in the region Brandenburg with 6.6% (74/1,121).

Conclusion: This analysis showed that fluoroquinolones are still prescribed for uncomplicated URTI, which must be considered as alarming regarding the nature of the disease and the unfavourable risk-benefit profiles. There were clear regional differences in fluoroquinolone prescribing, indicating potential for improvement in the use of reserve antibiotics for uncomplicated upper respiratory tract infections.

背景:急性上呼吸道感染(URTIs)是全科医生(gp)治疗的常见原因。一般来说,这些都是病毒和自限性疾病,但处方抗生素。在德国,由于可能产生严重的副作用,氟喹诺酮类药物未被批准用于咽炎、喉炎、扁桃体炎和急性支气管炎。本分析着眼于2022年全科医生对尿路感染的氟喹诺酮类药物处方。方法:利用德国健康保险公司BARMER的行政保险数据,对氟喹诺酮类药物的处方频率进行个案和区域分析。我们纳入了在全科医生诊所治疗的无相关伴随疾病的患者。结果:2022年,25%(1,197,568/4,720,786)的参保上呼吸道感染(URTI)患者使用抗生素。在排除合并症和其他危险因素(如既往住院)后,计算出无并发症尿道感染的处方率为6%(80,786/1,365,646)。氟喹诺酮类药物占抗生素处方的2.4%(1951 /80,786)。在全国范围内,3.7%的全科医生开氟喹诺酮类药物,最常见的是勃兰登堡地区,占6.6%(74/1,121)。结论:该分析表明,氟喹诺酮类药物仍被用于治疗非复杂性尿路感染,必须考虑到疾病的性质和不利的风险-收益情况,这是令人担忧的。氟喹诺酮类药物处方存在明显的地区差异,表明在非并发症上呼吸道感染的储备抗生素使用方面存在改进的潜力。
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引用次数: 0
Trichosporon infection in chronic kidney disease patients from a tertiary care hospital - a case series or an outbreak? An unanswered question but a well-managed problem. 一家三级医院的慢性肾病患者感染三孢子虫--是系列病例还是疫情爆发?这是一个悬而未决的问题,但也是一个管理得当的问题。
Pub Date : 2024-11-11 eCollection Date: 2024-01-01 DOI: 10.3205/id000090
Heera Hassan, Alina Nair L, Varsha N S, Jyothi R, Aravind Reghukumar, Sathyabhama M C, Ragi R G, Neethu Kishor, Mithu M G, Syed Ali, Kiran Gopal, Manjusree S, Swathi V Koramboor, Anuja U

While the majority of Trichosporon spp. isolated in clinical laboratories are typically associated with episodes of colonization or superficial infections, this fungal species has gained recognition as an opportunistic pathogen, leading to invasive infections worldwide. In this article, we present a case series of Trichosporon spp. identified through conventional methods, complemented by MALDI-TOF analysis from a reference institute for a single sample. The reported cases occurred within a confined time frame, and the construction of an epidemic curve suggested a common source with intermittent exposure. Despite the absence of identified breaches in infection prevention and control (IPC) in units with common exposure, this case series underscores the significance of considering Trichosporonosis in the differential diagnoses for post-transplant and chronic kidney disease patients, particularly those undergoing hemodialysis or utilizing Foley's catheter. Notably, research gaps were identified, emphasizing the need for further exploration of factors such as the role of magnesium and prolonged antibiotic usage in the development of invasive Trichosporon infections and newer treatment modalities against biofilm producing yeast like fungi.

虽然临床实验室中分离出的大多数毛孢子菌属通常都与定植或表皮感染有关,但这种真菌已被公认为是一种机会性病原体,可在全球范围内导致侵袭性感染。在这篇文章中,我们介绍了通过传统方法鉴定出的三代孢子菌属病例系列,以及参考机构对单一样本进行的 MALDI-TOF 分析。报告的病例发生在一个限定的时间范围内,流行病曲线的构建表明这是一个间歇性接触的共同来源。尽管在有共同接触源的单位中未发现感染预防与控制(IPC)方面的违规行为,但该系列病例强调了在移植后和慢性肾病患者的鉴别诊断中考虑三孢子虫病的重要性,尤其是那些接受血液透析或使用福来导管的患者。值得注意的是,研究发现了一些不足之处,强调有必要进一步探讨镁和长期使用抗生素等因素在侵袭性三孢子虫感染中的作用,以及针对产生生物膜的酵母类真菌的新型治疗方法。
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引用次数: 0
Fusarium spp.: infections and intoxications. 镰刀菌属:感染和中毒。
Pub Date : 2024-09-27 eCollection Date: 2024-01-01 DOI: 10.3205/id000089
Herbert Hof, Jens Schrecker

The genus Fusarium, member of the Hypocreaceae family, comprises over 500 spp. with an ever-evolving taxonomy. These fungi, some highly pathogenic, primarily affect various plants, including major crops like maize, rice, cereals, and potatoes, leading to significant agricultural losses and contributing to human undernutrition in certain regions. Additionally, Fusarium spp. produce harmful mycotoxins like trichothecenes, fumonisins, zearalenones, etc., posing health risks to animals and humans. These toxins generally transferred to food items can cause diverse issues, including organ failure, cancer, and hormonal disturbances, with effects sometimes appearing years after exposure. The fungi's vast genetic repertoire enables them to produce a range of virulence factors, leading to infections in both animals and humans, particularly in immunocompromised individuals. Fusarium spp. can cause systemic infections and local infections like keratitis. Due to limited antifungal effectiveness and biofilm formation, these infections are often challenging to treat with poor outcomes.

镰刀菌属(Hypocreaceae)是镰刀菌科(Hypocreaceae)的成员,由 500 多种真菌组成,其分类不断演变。这些真菌(有些具有高度致病性)主要影响各种植物,包括玉米、水稻、谷物和马铃薯等主要农作物,导致重大农业损失,并在某些地区造成人类营养不良。此外,镰刀菌属还会产生单端孢霉烯、伏马菌素、玉米赤霉烯酮等有害霉菌毒素,对动物和人类的健康构成威胁。这些毒素通常会转移到食品中,导致各种问题,包括器官衰竭、癌症和荷尔蒙紊乱,有时在接触后数年才会出现影响。真菌庞大的基因库使其能够产生一系列毒力因子,导致动物和人类感染,尤其是免疫力低下的人。镰刀菌属可引起全身感染和局部感染,如角膜炎。由于抗真菌效果有限和生物膜的形成,这些感染往往难以治疗,且效果不佳。
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引用次数: 0
A complex case of bacterial pericarditis caused by a new pathogenic agent. 一个由新病原体引起的复杂细菌性心包炎病例。
Pub Date : 2024-09-11 eCollection Date: 2024-01-01 DOI: 10.3205/id000088
Joana Lima Lopes, Daniel Candeias Faria, Bárbara Flor-de-Lima, Márcio Madeira, Sara Ranchordas, José Pedro Neves, João Baltazar Ferreira

Dermabacter hominis is a gram-positive facultative anaerobic agent. It is a human skin colonizer that can be responsible for opportunistic infections in immunocompromised patients. To date, the infections caused by this agent are related to bone, joint, eye, peritoneal dialysis catheters, abscesses or infected vascular grafts. Overall, it has a favorable outcome with good response to vancomycin, teicoplanin or linezolide, and so it has not been considered a concerning pathogenic agent. We present the first case in scientific literature with isolation of D. hominis in pericardial fluid in the setting of infectious bacterial pericarditis, with an aggressive course and poor evolution.

人皮杆菌是一种革兰氏阳性兼性厌氧菌。它是一种人体皮肤定植菌,可导致免疫力低下患者的机会性感染。迄今为止,由这种病原体引起的感染与骨、关节、眼、腹膜透析导管、脓肿或受感染的血管移植物有关。总的来说,这种病原体对万古霉素、替考拉宁或利奈唑胺反应良好,因此不被认为是一种致病性病原体。我们在科学文献中发现了第一例在感染性细菌性心包炎的心包液中分离出人乳头瘤病毒的病例,该病例病程凶险,病情发展缓慢。
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引用次数: 0
The interpretation of COVID-19 in cause-of-death statistics: a matter of causality. 死因统计中 COVID-19 的解释:因果关系问题。
Pub Date : 2024-09-11 eCollection Date: 2024-01-01 DOI: 10.3205/id000087
Peter P M Harteloh

Background: Mortality is an important indicator for estimating the impact of the COVID-19 pandemic. However, different registrations provide different figures and the question is how to interpret the number of COVID-19 deaths reported.

Objective: To study the role of COVID-19 in dying in order to explain the representation of COVID-19 in cause-of-death statistics.

Methods: Analysis of all death certificates mentioning COVID-19 in the Dutch cause-of-death registry during the pandemic (n=51,181). The role of COVID-19 as cause of death was studied by the way it was reported on death certificates. A calculation of odds ratios was performed for studying associations between COVID-19 and other reported causes of death.

Results: In 24% of the cases COVID-19 was the only cause of death mentioned on a death certificate. In 76% of the cases, one or more other diseases played a role in dying. Three patterns emerged: COVID-19 associated with 1. neurodegenerative disorders, 2. chronic respiratory disorders, and 3. metabolic disorders. Of all death certificates mentioning the diseases, COVID-19 was the start of the causal chain leading to death in 45.2% of the cases, while COVID-19 was selected for cause-of-death statistics by special World Health Organization WHO instructions in 93.9% of the cases.

Conclusions: Cause-of-death statistics overestimate the role of COVID-19 as underlying cause of death. In a majority of the deceased cases, there is an association of COVID-19 with other diseases not captured by cause-of-death statistics reporting (only) one cause of death per deceased. A multi-causal approach is needed to evaluate the pandemic and inform health policy.

背景:死亡率是估计 COVID-19 大流行影响的一个重要指标。然而,不同的登记提供了不同的数字,问题是如何解释所报告的 COVID-19 死亡人数:研究 COVID-19 在死亡中的作用,以解释 COVID-19 在死因统计中的代表性:方法:分析大流行期间荷兰死因登记处所有提及 COVID-19 的死亡证明(n=51,181)。通过死亡证明上的报告方式研究 COVID-19 作为死因的作用。为了研究 COVID-19 与其他报告死因之间的关联,我们计算了几率比:结果:在 24% 的病例中,COVID-19 是死亡证明中提到的唯一死因。在 76% 的病例中,一种或多种其他疾病也是导致死亡的原因之一。出现了三种模式:1.神经退行性疾病;2.慢性呼吸系统疾病;3.代谢性疾病。在所有提及这些疾病的死亡证明中,45.2%的病例中 COVID-19 是导致死亡的因果链的起点,而在 93.9% 的病例中,COVID-19 被世界卫生组织的特殊说明选作死因统计:结论:死因统计高估了 COVID-19 作为根本死因的作用。在大多数死亡病例中,COVID-19 与其他疾病存在关联,而死因统计(仅)报告每名死者的一个死因,却无法捕捉到这种关联。需要采用多病因方法来评估大流行病并为卫生政策提供信息。
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引用次数: 0
Therapeutic strategies for uncomplicated cystitis in women. 女性无并发症膀胱炎的治疗策略。
Pub Date : 2024-04-29 eCollection Date: 2024-01-01 DOI: 10.3205/id000086
Kurt G Naber, Jakhongir F Alidjanov, Reinhard Fünfstück, Walter L Strohmaier, Jennifer Kranz, Tommaso Cai, Adrian Pilatz, Florian M Wagenlehner

Uncomplicated cystitis is affecting many women of all ages and has a great impact on the quality of life, especially in women suffering from recurrent, uncomplicated cystitis. By far the most frequent uropathogen, E. coli, may have acquired increasing resistance against a variety of oral antibiotics, which may differ between countries and regions. Therefore, local resistance data are important to be considered. On the other hand, non-antibiotic therapy has also become an option which should be discussed and offered to the patient. In patients suffering from recurrent uncomplicated cystitis, individual risk factors and possible behavioral changes should first be taken into account. Non-antimicrobial prophylactic strategies shown to be successful in well-designed clinical studies are the next options. Long term antibiotic prophylaxis, however, should only be considered as a last option. For some of those patients self-diagnosis and self-treatment may be suitable, e.g. by using a recognized questionnaire.

无并发症膀胱炎影响着各个年龄段的许多妇女,对她们的生活质量造成了很大影响,尤其是反复发作的无并发症膀胱炎。迄今为止,最常见的泌尿道病原体--大肠杆菌可能对各种口服抗生素产生了越来越强的耐药性,而这些耐药性在不同国家和地区可能有所不同。因此,必须考虑当地的耐药性数据。另一方面,非抗生素疗法也已成为一种选择,应与患者讨论并提供给他们。对于反复发作的无并发症膀胱炎患者,首先应考虑个人风险因素和可能的行为改变。非抗菌预防策略是下一个选择,这些策略在设计周密的临床研究中被证明是成功的。然而,长期抗生素预防只能作为最后的选择。对于其中一些患者来说,自我诊断和自我治疗可能是合适的,例如使用公认的调查问卷。
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引用次数: 0
Q fever, a rare cause of secondary hemophagocytic lymphohistiocytosis. Q 热,继发性嗜血细胞淋巴组织细胞增多症的罕见病因。
Pub Date : 2023-12-06 eCollection Date: 2023-01-01 DOI: 10.3205/id000085
Juan Francisco Nieves Salceda, Pablo Lozano Cuesta, Sara Hermoso de Mendoza Aristegui, Jonathan Fernández-Suárez, Claudia Madrid Carbajal, Marta María García Clemente

Hemophagocytic lymphohistiocytosis (HLH) is a rare syndrome in which Coxiella burnetii is a very infrequent etiology. We present the case of a 62-year-old male with progressive pulmonary infiltrates, fever, hepatitis, and bicytopenia despite broad spectrum antibiotics. A thorough clinical evaluation led to a high suspicion of Coxiella burnetii infection, subsequently confirmed through a positive serum polymerase chain reaction (PCR) analysis. HLH diagnosis was established based on the fulfillment of 5/8 diagnostic criteria, obviating the need for a bone marrow biopsy. Targeted antibiotic treatment and dexamethasone led to full recovery within two weeks, eliminating the need for stronger immunosuppressive therapy.

嗜血细胞淋巴组织细胞增多症(HLH)是一种罕见的综合征,其中烧伤柯西氏杆菌是一种非常罕见的病原体。我们报告了一例 62 岁男性患者的病例,尽管使用了广谱抗生素,患者仍出现进行性肺部浸润、发热、肝炎和全血细胞减少。通过全面的临床评估,我们高度怀疑感染了烧伤梭菌,随后通过阳性血清聚合酶链反应(PCR)分析证实了这一点。根据 5/8 诊断标准,确定了 HLH 诊断,无需进行骨髓活检。有针对性的抗生素治疗和地塞米松使患者在两周内完全康复,无需再接受更强的免疫抑制治疗。
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引用次数: 0
AWaRe-based culture reporting format: a novel tool for antimicrobial stewardship. 基于 AWaRe 的培养报告格式:抗菌药物管理的新型工具。
Pub Date : 2023-11-14 eCollection Date: 2023-01-01 DOI: 10.3205/id000084
Heera Hassan, Jyothi R, Sreenadh H, Manjusree S, Aravind Reghukumar
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引用次数: 0
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