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Association between human blood metabolome and the risk of hypertension 人体血液代谢组与高血压风险之间的关系
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-15 DOI: 10.1186/s12863-023-01180-z
Nannan Dai, Yujuan Deng, Baishi Wang
Hypertension, commonly referred to as high blood pressure, is a chronic medical condition characterized by persistently elevated blood pressure levels. It is a prevalent global health issue, affecting a significant portion of the population worldwide. Hypertension is often asymptomatic, making it a silent but potentially dangerous condition if left untreated. Genetic instruments for 1,091 were from a recent comprehensive metabolome genome-wide association study (GWAS). Summary statistics of diastolic blood pressure (DBP) and systolic blood pressure (SBP) involving 757,601 sample size were analyzed. Two-sample Mendelian Randomization (MR) was conducted to assess causal effect of metabolites on DBP and SBP risk, and reverse MR analysis was performed to identify the DBP/SBP causal effect on blood metabolites. Twelve and twenty-two metabolites were identified to be associated with DBP and SBP, respectively. Sensitive analysis showed four metabolites had robustness association on BP. Reverse MR demonstrated DBP and SBP could decrease the tricosanoyl sphingomyelin (d18:1/23:0)* level and increase the 2-hydroxyhippurate (salicylurate) level in blood, respectively. Our findings reveal an association between blood metabolites and blood pressure (DBP and SBP), suggesting potential therapeutic targets for hypertension intervention.
高血压俗称高血脂,是一种以血压持续升高为特征的慢性疾病。它是一个普遍的全球性健康问题,影响着全球相当一部分人口。高血压通常没有症状,因此如果不及时治疗,虽然无声无息,但却有潜在的危险。最近的一项综合性代谢组全基因组关联研究(GWAS)提供了 1,091 个基因工具。对涉及 757601 个样本量的舒张压(DBP)和收缩压(SBP)进行了汇总统计分析。通过双样本孟德尔随机化(MR)评估代谢物对 DBP 和 SBP 风险的因果效应,并通过反向 MR 分析确定 DBP/SBP 对血液代谢物的因果效应。结果发现,分别有 12 种和 22 种代谢物与 DBP 和 SBP 相关。敏感性分析表明,四种代谢物与血压有稳健的相关性。反向 MR 显示,DBP 和 SBP 可分别降低血液中三糖酰鞘磷脂(d18:1/23:0)*的水平和增加 2-羟基海波酸盐(水杨酸盐)的水平。我们的研究结果揭示了血液代谢物与血压(DBP 和 SBP)之间的关系,为高血压干预提供了潜在的治疗靶点。
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引用次数: 0
Diverse WGBS profiles of longissimus dorsi muscle in Hainan black goats and hybrid goats 海南黑山羊和杂交山羊背长肌的 WGBS 特征多样性
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-14 DOI: 10.1186/s12863-023-01182-x
Yuwei Ren, Xing Chen, Xinli Zheng, Feng Wang, Ruiping Sun, Limin Wei, Yan Zhang, Hailong Liu, Yanning Lin, Lingling Hong, Xiaoxian Huang, Zhe Chao
Goat products have played a crucial role in meeting the dietary demands of people since the Neolithic era, giving rise to a multitude of goat breeds globally with varying characteristics and meat qualities. The primary objective of this study is to pinpoint the pivotal genes and their functions responsible for regulating muscle fiber growth in the longissimus dorsi muscle (LDM) through DNA methylation modifications in Hainan black goats and hybrid goats. Whole-genome bisulfite sequencing (WGBS) was employed to scrutinize the impact of methylation on LDM growth. This was accomplished by comparing methylation differences, gene expression, and their associations with growth-related traits. In this study, we identified a total of 3,269 genes from differentially methylated regions (DMR), and detected 189 differentially expressed genes (DEGs) through RNA-seq analysis. Hypo DMR genes were primarily enriched in KEGG terms associated with muscle development, such as MAPK and PI3K-Akt signaling pathways. We selected 11 hub genes from the network that intersected the gene sets within DMR and DEGs, and nine genes exhibited significant correlation with one or more of the three LDM growth traits, namely area, height, and weight of loin eye muscle. Particularly, PRKG1 demonstrated a negative correlation with all three traits. The top five most crucial genes played vital roles in muscle fiber growth: FOXO3 safeguarded the myofiber’s immune environment, FOXO6 was involved in myotube development and differentiation, and PRKG1 facilitated vasodilatation to release more glucose. This, in turn, accelerated the transfer of glucose from blood vessels to myofibers, regulated by ADCY5 and AKT2, ultimately ensuring glycogen storage and energy provision in muscle fibers. This study delved into the diverse methylation modifications affecting critical genes, which collectively contribute to the maintenance of glycogen storage around myofibers, ultimately supporting muscle fiber growth.
自新石器时代以来,山羊产品在满足人们的饮食需求方面发挥了至关重要的作用,在全球范围内产生了许多具有不同特征和肉质的山羊品种。本研究的主要目的是通过DNA甲基化修饰,确定海南黑山羊和杂交山羊背最长肌(LDM)中调控肌纤维生长的关键基因及其功能。采用全基因组亚硫酸盐测序(WGBS)来仔细检查甲基化对LDM生长的影响。这是通过比较甲基化差异、基因表达及其与生长相关性状的关联来完成的。在这项研究中,我们从差异甲基化区(DMR)中鉴定了总共3269个基因,并通过RNA-seq分析检测了189个差异表达基因(DEGs)。Hypo DMR基因主要富集于与肌肉发育相关的KEGG中,如MAPK和PI3K-Akt信号通路。我们从网络中选择了11个与DMR和deg内的基因集相交的枢纽基因,其中9个基因与腰眼肌的面积、高度和重量这三个LDM生长性状中的一个或多个具有显著相关性。特别是,PRKG1与这三个性状均呈负相关。前5个最关键的基因在肌纤维生长中起着至关重要的作用:FOXO3保护肌纤维的免疫环境,FOXO6参与肌管的发育和分化,PRKG1促进血管舒张释放更多的葡萄糖。这反过来又加速了葡萄糖在ADCY5和AKT2的调控下从血管向肌纤维的转移,最终确保了肌纤维中的糖原储存和能量供应。本研究深入研究了影响关键基因的各种甲基化修饰,这些修饰共同有助于维持肌纤维周围的糖原储存,最终支持肌纤维的生长。
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引用次数: 0
Draft genome of Castanopsis chinensis, a dominant species safeguarding biodiversity in subtropical broadleaved evergreen forests 保护亚热带常绿阔叶林生物多样性的优势物种栲的基因组草案
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-14 DOI: 10.1186/s12863-023-01183-w
Pan Chen, Ju-Yu Lian, Bin Wu, Hong-Lin Cao, Zhi-Hong Li, Zheng-Feng Wang
Castanopsis is the third largest genus in the Fagaceae family and is essentially tropical or subtropical in origin. The species in this genus are mainly canopy-dominant trees, and the key components of evergreen broadleaved forests play a crucial role in the maintenance of local biodiversity. Castanopsis chinensis, distributed from South China to Vietnam, is a representative species. It currently suffers from a high disturbance of human activity and climate change. Here, we present its assembled genome to facilitate its preliminary conservation and breeding on the genome level. The C. chinensis genome was assembled and annotated by Nanopore and MGI whole-genome sequencing and RNA-seq reads using leaf tissues. The assembly was 888,699,661 bp in length, consisting of 133 contigs and a contig N50 of 23,395,510 bp. A completeness assessment of the assembly with Benchmarking Universal Single-Copy Orthologs (BUSCO) indicated a score of 98.3%. Repetitive elements comprised 471,006,885 bp, accounting for 55.9% of the assembled sequences. A total of 51,406 genes that coded for 54,310 proteins were predicted. Multiple databases were used to functionally annotate the protein sequences.
栲属是落叶松科第三大属,主要产于热带或亚热带地区。该属的物种主要是树冠优势树种,是常绿阔叶林的重要组成部分,在维护当地生物多样性方面发挥着至关重要的作用。分布于华南至越南的栲树是其中的代表树种。目前,它受到人类活动和气候变化的严重干扰。在此,我们展示了其组装的基因组,以促进其在基因组水平上的初步保护和育种。通过对叶片组织进行 Nanopore 和 MGI 全基因组测序和 RNA-seq 读取,组装并注释了 chinensis 的基因组。该序列长度为 888,699,661 bp,由 133 个等位基因组成,等位基因 N50 为 23,395,510 bp。利用通用单拷贝同源物基准(BUSCO)对该序列进行的完整性评估显示,得分率为 98.3%。重复元件包括 471,006,885 bp,占组装序列的 55.9%。共预测出 51,406 个基因,编码 54,310 种蛋白质。多个数据库被用来对蛋白质序列进行功能注释。
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引用次数: 0
Chromosome-scale genome assembly of the ‘Munstead’ cultivar of Lavandula angustifolia 薰衣草栽培品种 "Munstead "的染色体级基因组组装
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-13 DOI: 10.1186/s12863-023-01181-y
John P. Hamilton, Brieanne Vaillancourt, Joshua C. Wood, Haiyan Wang, Jiming Jiang, Douglas E. Soltis, C. Robin Buell, Pamela S. Soltis
Lavandula angustifolia (English lavender) is commercially important not only as an ornamental species but also as a major source of fragrances. To better understand the genomic basis of chemical diversity in lavender, we sequenced, assembled, and annotated the ‘Munstead’ cultivar of L. angustifolia. A total of 80 Gb of Oxford Nanopore Technologies reads was used to assemble the ‘Munstead’ genome using the Canu genome assembler software. Following multiple rounds of error correction and scaffolding using Hi-C data, the final chromosome-scale assembly represents 795,075,733 bp across 25 chromosomes with an N50 scaffold length of 31,371,815 bp. Benchmarking Universal Single Copy Orthologs analysis revealed 98.0% complete orthologs, indicative of a high-quality assembly representative of genic space. Annotation of protein-coding sequences revealed 58,702 high-confidence genes encoding 88,528 gene models. Access to the ‘Munstead’ genome will permit comparative analyses within and among lavender accessions and provides a pivotal species for comparative analyses within Lamiaceae.
英国薰衣草(Lavandula angustifolia)不仅是重要的商业观赏物种,也是主要的香料来源。为了更好地了解薰衣草化学多样性的基因组基础,我们对 L. angustifolia 的 "Munstead "栽培品种进行了测序、组装和注释。我们利用牛津纳米孔技术公司(Oxford Nanopore Technologies)总计 80 Gb 的读数,使用 Canu 基因组组装软件组装了 "Munstead "基因组。在使用 Hi-C 数据进行多轮错误校正和支架构建后,最终的染色体级组装结果为 25 条染色体上的 795,075,733 bp,N50 支架长度为 31,371,815 bp。基准通用单拷贝同源物分析显示,98.0% 的同源物是完整的,表明这是一个代表基因空间的高质量装配。蛋白质编码序列的注释发现了 58,702 个高置信度基因,编码 88,528 个基因模型。获得 "Munstead "基因组将允许在薰衣草品种内部和品种之间进行比较分析,并为唇形科内的比较分析提供了一个关键物种。
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引用次数: 0
Investigating the impact of non-additive genetic effects in the estimation of variance components and genomic predictions for heat tolerance and performance traits in crossbred and purebred pig populations 研究非加性遗传效应在估计杂交猪和纯种猪群体耐热性和性能性状的变异成分和基因组预测中的影响
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-12-13 DOI: 10.1186/s12863-023-01174-x
Letícia Fernanda de Oliveira, Luiz F. Brito, Daniele Botelho Diniz Marques, Delvan Alves da Silva, Paulo Sávio Lopes, Cassiane Gomes dos Santos, Jay S. Johnson, Renata Veroneze
Non-additive genetic effects are often ignored in livestock genetic evaluations. However, fitting them in the models could improve the accuracy of genomic breeding values. Furthermore, non-additive genetic effects contribute to heterosis, which could be optimized through mating designs. Traits related to fitness and adaptation, such as heat tolerance, tend to be more influenced by non-additive genetic effects. In this context, the primary objectives of this study were to estimate variance components and assess the predictive performance of genomic prediction of breeding values based on alternative models and two independent datasets, including performance records from a purebred pig population and heat tolerance indicators recorded in crossbred lactating sows. Including non-additive genetic effects when modelling performance traits in purebred pigs had no effect on the residual variance estimates for most of the traits, but lower additive genetic variances were observed, especially when additive-by-additive epistasis was included in the models. Furthermore, including non-additive genetic effects did not improve the prediction accuracy of genomic breeding values, but there was animal re-ranking across the models. For the heat tolerance indicators recorded in a crossbred population, most traits had small non-additive genetic variance with large standard error estimates. Nevertheless, panting score and hair density presented substantial additive-by-additive epistatic variance. Panting score had an epistatic variance estimate of 0.1379, which accounted for 82.22% of the total genetic variance. For hair density, the epistatic variance estimates ranged from 0.1745 to 0.1845, which represent 64.95–69.59% of the total genetic variance. Including non-additive genetic effects in the models did not improve the accuracy of genomic breeding values for performance traits in purebred pigs, but there was substantial re-ranking of selection candidates depending on the model fitted. Except for panting score and hair density, low non-additive genetic variance estimates were observed for heat tolerance indicators in crossbred pigs.
在家畜遗传评估中,非加性遗传效应往往被忽视。然而,在模型中加入非加性遗传效应可以提高基因组育种值的准确性。此外,非加性遗传效应还有助于异质性,可通过交配设计对其进行优化。与适应性和适应性相关的性状,如耐热性,往往受非加性遗传效应的影响更大。在这种情况下,本研究的主要目的是估算方差成分,并评估基于替代模型和两个独立数据集(包括纯种猪群体的生产性能记录和杂交哺乳母猪的耐热性指标记录)的基因组预测育种值的预测性能。在对纯种猪的表现性状建模时,加入非加性遗传效应对大多数性状的残差估计值没有影响,但观察到的加性遗传变异较低,尤其是在模型中加入逐加外显性时。此外,加入非加性遗传效应并不能提高基因组育种值的预测准确性,但在不同的模型中存在动物重新排序的情况。就杂交种群中记录的耐热性指标而言,大多数性状的非加性遗传方差较小,标准误差估计值较大。然而,喘气得分和毛发密度的外显性差异很大。喘气得分的外显变异估计值为 0.1379,占总遗传变异的 82.22%。毛发密度的外显变异估计值为 0.1745 至 0.1845,占总遗传变异的 64.95%至 69.59%。在模型中加入非加性遗传效应并不能提高纯种猪性能性状基因组育种值的准确性,但根据所拟合的模型,候选猪种的排名会有很大的调整。除了气喘评分和毛发密度外,杂交猪耐热性指标的非加性遗传方差估计值较低。
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引用次数: 0
Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations. 利用 Cas9 或 dCas9 靶向常染色体角膜炎变体基因,在不诱导突变的情况下使 XX 人男性化。
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-12-18 DOI: 10.1186/s12863-020-00941-4
Pasquale Primo, Angela Meccariello, Maria Grazia Inghilterra, Andrea Gravina, Giuseppe Del Corsano, Gennaro Volpe, Germano Sollazzo, Serena Aceto, Mark D Robinson, Marco Salvemini, Giuseppe Saccone

Background: Females of the Mediterranean fruit fly Ceratitis capitata (Medfly) are major agricultural pests, as they lay eggs into the fruit crops of hundreds of plant species. In Medfly, female sex determination is based on the activation of Cctransformer (Cctra). A maternal contribution of Cctra is required to activate Cctra itself in the XX embryos and to start and epigenetically maintain a Cctra positive feedback loop, by female-specific alternative splicing, leading to female development. In XY embryos, the male determining Maleness-on-the-Y gene (MoY) blocks this activation and Cctra produces male-specific transcripts encoding truncated CcTRA isoforms and male differentiation occurs.

Results: With the aim of inducing frameshift mutations in the first coding exon to disrupt both female-specific and shorter male-specific CcTRA open reading frames (ORF), we injected Cas9 ribonucleoproteins (Cas9 and single guide RNA, sgRNA) in embryos. As this approach leads to mostly monoallelic mutations, masculinization was expected only in G1 XX individuals carrying biallelic mutations, following crosses of G0 injected individuals. Surprisingly, these injections into XX-only embryos led to G0 adults that included not only XX females but also 50% of reverted fertile XX males. The G0 XX males expressed male-specific Cctra transcripts, suggesting full masculinization. Interestingly, out of six G0 XX males, four displayed the Cctra wild type sequence. This finding suggests that masculinization by Cas9-sgRNA injections was independent from its mutagenic activity. In line with this observation, embryonic targeting of Cctra in XX embryos by a dead Cas9 (enzymatically inactive, dCas9) also favoured a male-specific splicing of Cctra, in both embryos and adults.

Conclusions: Our data suggest that the establishment of Cctra female-specific autoregulation during the early embryogenesis has been repressed in XX embryos by the transient binding of the Cas9-sgRNA on the first exon of the Cctra gene. This hypothesis is supported by the observation that the shift of Cctra splicing from female to male mode is induced also by dCas9. Collectively, the present findings corroborate the idea that a transient embryonic inactivation of Cctra is sufficient for male sex determination.

背景:地中海果蝇(Ceratitis capitata,Medfly)的雌蝇是主要的农业害虫,因为它们在数百种植物的果实中产卵。在地中海果蝇中,雌性性别决定基于 Cctransformer(Cctra)的激活。在 XX 胚胎中,需要母源 Cctra 激活 Cctra 本身,并通过雌性特异性替代剪接启动和维持 Cctra 的正反馈回路,从而导致雌性发育。在 XY 胚胎中,决定雄性的 Maleness-on-the-Y 基因(MoY)阻止了这种激活,Cctra 产生雄性特异性转录本,编码截短的 CcTRA 异构体,从而发生雄性分化:为了在第一个编码外显子中诱导移帧突变,以破坏雌性特异性和较短的雄性特异性 CcTRA 开放阅读框(ORF),我们在胚胎中注射了 Cas9 核糖核蛋白(Cas9 和单导 RNA,sgRNA)。由于这种方法主要导致单拷贝突变,因此预计只有在 G0 注入个体杂交后,携带双拷贝突变的 G1 XX 个体才会男性化。令人惊讶的是,这些注射到只有 XX 胚胎中的 G0 成体不仅包括 XX 雌性,还包括 50%的可育 XX 雄性。这些 G0 XX 雄性表达了雄性特异的 Cctra 转录本,表明它们已完全男性化。有趣的是,在六只 G0 XX 雄性中,有四只显示了 Cctra 野生型序列。这一发现表明,Cas9-sgRNA注射的男性化作用与其诱变活性无关。与这一观察结果相一致的是,在XX胚胎中用死Cas9(无酶活性,dCas9)对Cctra进行胚胎靶向,也有利于Cctra在胚胎和成体中的雄性特异性剪接:我们的数据表明,在 XX 胚胎中,Cctra 基因第一外显子上的 Cas9-sgRNA 瞬时结合抑制了 Cctra 早期胚胎发生过程中雌性特异性自动调节的建立。dCas9 还诱导 Cctra 的剪接从雌性模式转变为雄性模式,这一观察结果也支持了这一假设。总之,本研究结果证实了一个观点,即 Cctra 在胚胎期的短暂失活足以决定雄性性别。
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引用次数: 0
An early female lethal system of the New World screwworm, Cochliomyia hominivorax, for biotechnology-enhanced SIT. 用于生物技术增强SIT的新世界螺旋虫早期雌性致死系统,人类锥虫。
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-12-18 DOI: 10.1186/s12863-020-00948-x
Carolina Concha, Ying Yan, Alex Arp, Evelin Quilarque, Agustin Sagel, Adalberto Pérez de León, W Owen McMillan, Steven Skoda, Maxwell J Scott

Background: The New World Screwworm fly (NWS), Cochliomyia hominivorax, is an ectoparasite of warm-blooded animals and a major pest of livestock in parts of South America and the Caribbean where it remains endemic. In North and Central America it was eradicated using the Sterile Insect Technique (SIT). A control program is managed cooperatively between the governments of the United States and Panama to prevent the northward spread of NWS from infested countries in South America. This is accomplished by maintaining a permanent barrier through the release of millions of sterile male and female flies in the border between Panama and Colombia. Our research team demonstrated the utility of biotechnology-enhanced approaches for SIT by developing a male-only strain of the NWS. The strain carried a single component tetracycline repressible female lethal system where females died at late larval/pupal stages. The control program can be further improved by removing females during embryonic development as larval diet costs are significant.

Results: The strains developed carry a two-component system consisting of the Lucilia sericata bottleneck gene promoter driving expression of the tTA gene and a tTA-regulated Lshid proapoptotic effector gene. Insertion of the sex-specifically spliced intron from the C. hominivorax transformer gene within the Lshid gene ensures that only females die when insects are reared in the absence of tetracycline. In several double homozygous two-component strains and in one "All-in-one" strain that had both components in a single construct, female lethality occurred at the embryonic and/or first instar larval stages when raised on diet without tetracycline. Laboratory evaluation for phenotypes that are relevant for mass rearing in a production facility revealed that most strains had fitness characteristics similar to the wild type J06 strain that is currently reared for release in the permanent barrier. Testing of an "All in one" strain under mass rearing conditions showed that the strain maintained the fitness characteristics observed in small-scale rearing.

Conclusions: The early female lethal strains described here could be selected by the NWS Control Program for testing at large scale in the production facility to enhance the efficiency of the NWS eradication program.

背景:新世界螺旋蝇(New World Screwworm fly, NWS)是温血动物的一种体外寄生虫,也是南美洲和加勒比部分地区牲畜的主要害虫。在北美和中美洲,使用昆虫不育技术(SIT)将其根除。控制方案是美国和巴拿马政府之间的合作管理,以防止NWS从南美侵染国家向北蔓延。这是通过在巴拿马和哥伦比亚之间的边界释放数百万只不育的雄性和雌性苍蝇来维持永久屏障来实现的。我们的研究小组通过开发NWS的雄性菌株,证明了生物技术增强方法对SIT的实用性。该菌株携带单组分四环素抑制雌虫致死系统,雌虫在幼虫/蛹后期死亡。由于幼虫的饮食成本很高,可以通过在胚胎发育期间去除雌性来进一步改善控制程序。结果:培养的菌株携带一个双组分系统,包括驱动tTA基因表达的丝光Lucilia sericata瓶颈基因启动子和tTA调控的Lshid促凋亡效应基因。在Lshid基因中插入来自C. hominivorax变形基因的性别特异性剪接内含子,确保在没有四环素的环境下饲养昆虫时,只有雌性死亡。在几种双纯合子双组分菌株和一种“全合一”菌株中,这两种成分在一个结构中都有,当在没有四环素的饮食中饲养时,雌性死亡发生在胚胎和/或第一龄幼虫阶段。对生产设施中大规模饲养相关表型的实验室评估显示,大多数菌株具有与目前在永久屏障中饲养释放的野生型J06菌株相似的适应度特征。在群体饲养条件下对“All in one”品系的测试表明,该品系保持了在小规模饲养中观察到的适合度特征。结论:本文描述的早期雌性致死菌株可由NWS控制计划选择,在生产设施中进行大规模检测,以提高NWS根除计划的效率。
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引用次数: 15
The hAT-family transposable element, hopper, from Bactrocera dorsalis is a functional vector for insect germline transformation. 背小实蝇hat家族转座因子hopper是昆虫种系转化的功能载体。
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-12-18 DOI: 10.1186/s12863-020-00942-3
Alfred M Handler, Marc F Schetelig

Background: The hopper hAT-family transposable element isolated from the Oriental fruit fly, Bactrocera dorsalis, is distantly related to both the Drosophila hobo element and the Activator element from maize. The original 3120 bp hopperBd-Kah element isolated from the Kahuku wild-type strain was highly degenerate and appeared to have a mutated transposase and terminal sequences, while a second 3131 bp element, hopperBd-we, isolated from a white eye mutant strain had an intact transposase reading frame and terminal sequences consistent with function.

Results: The hopperBd-we element was tested for function by its ability to mediate germline transformation in two dipteran species other than B. dorsalis. This was achieved by creating a binary vector/helper transformation system by linking the hopperBd-we transposase reading frame to a D. melanogaster hsp70 promoter for a heat-inducible transposase helper plasmid, and creating vectors marked with the D. melanogaster mini-white+ or polyubiquitin-regulated DsRed fluorescent protein markers.

Conclusions: Both vectors were successfully used to transform D. melanogaster, and the DsRed vector was also used to transform the Caribbean fruit fly, Anastrepha suspensa, indicating a wide range of hopper function in dipteran species and, potentially, non-dipteran species. This vector provides a new tool for insect genetic modification for both functional genomic analysis and the control of insect populations.

背景:从东方果蝇小实蝇(Bactrocera dorsalis)中分离到的hopper hAT-family转座因子与来自玉米的Drosophila hobo元件和Activator元件均有远亲关系。从Kahuku野生型菌株中分离到的3120 bp的hopperBd-Kah元件高度退化,出现了转座酶和末端序列的突变,而从白眼突变株中分离到的3131 bp的hopperBd-we元件有完整的转座酶阅读框和与功能一致的末端序列。结果:hopperb -we元件在两种双翅目昆虫中介导种系转化的能力得到验证。这是通过建立一个二元载体/辅助转化系统实现的,通过将hopperBd-we转座酶阅读框连接到D. melanogaster热诱导转座酶辅助质粒的hsp70启动子,并创建带有D. melanogaster微白+或多泛素调节的DsRed荧光蛋白标记的载体。结论:两种媒介均成功转化了黑腹扁蝇,并且DsRed媒介也被用于转化加勒比果蝇,表明在双翅目和非双翅目物种中具有广泛的跳跃功能。该载体为昆虫功能基因组分析和昆虫种群控制提供了一种新的基因改造工具。
{"title":"The hAT-family transposable element, hopper, from Bactrocera dorsalis is a functional vector for insect germline transformation.","authors":"Alfred M Handler,&nbsp;Marc F Schetelig","doi":"10.1186/s12863-020-00942-3","DOIUrl":"https://doi.org/10.1186/s12863-020-00942-3","url":null,"abstract":"<p><strong>Background: </strong>The hopper hAT-family transposable element isolated from the Oriental fruit fly, Bactrocera dorsalis, is distantly related to both the Drosophila hobo element and the Activator element from maize. The original 3120 bp hopper<sup>Bd-Kah</sup> element isolated from the Kahuku wild-type strain was highly degenerate and appeared to have a mutated transposase and terminal sequences, while a second 3131 bp element, hopper<sup>Bd-we</sup>, isolated from a white eye mutant strain had an intact transposase reading frame and terminal sequences consistent with function.</p><p><strong>Results: </strong>The hopper<sup>Bd-we</sup> element was tested for function by its ability to mediate germline transformation in two dipteran species other than B. dorsalis. This was achieved by creating a binary vector/helper transformation system by linking the hopper<sup>Bd-we</sup> transposase reading frame to a D. melanogaster hsp70 promoter for a heat-inducible transposase helper plasmid, and creating vectors marked with the D. melanogaster mini-white<sup>+</sup> or polyubiquitin-regulated DsRed fluorescent protein markers.</p><p><strong>Conclusions: </strong>Both vectors were successfully used to transform D. melanogaster, and the DsRed vector was also used to transform the Caribbean fruit fly, Anastrepha suspensa, indicating a wide range of hopper function in dipteran species and, potentially, non-dipteran species. This vector provides a new tool for insect genetic modification for both functional genomic analysis and the control of insect populations.</p>","PeriodicalId":9197,"journal":{"name":"BMC Genetics","volume":"21 Suppl 2","pages":"137"},"PeriodicalIF":2.9,"publicationDate":"2020-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12863-020-00942-3","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38727493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Joint FAO/IAEA coordinated research project on "comparing rearing efficiency and competitiveness of sterile male strains produced by genetic, transgenic or symbiont-based technologies". 粮农组织/原子能机构联合协调研究项目 "比较通过基因、转基因或共生技术生产的雄性不育株的饲养效率和竞争力"。
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-12-18 DOI: 10.1186/s12863-020-00931-6
Kostas Bourtzis, Carlos Cáceres, Marc F Schetelig
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引用次数: 0
Geographic distribution of sex chromosome polymorphism in Anastrepha fraterculus sp. 1 from Argentina. 阿根廷 Anastrepha fraterculus sp.
IF 2.9 Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2020-12-18 DOI: 10.1186/s12863-020-00944-1
María Cecilia Giardini, Mariela Nieves, Alejandra Carla Scannapieco, Claudia Alejandra Conte, Fabián Horacio Milla, María Elena Schapovaloff, Maria Soledad Frissolo, María Isabel Remis, Jorge Luis Cladera, Silvia Beatriz Lanzavecchia

Background: Anastrepha fraterculus is recognized as a quarantine pest in several American countries. This fruit fly species is native to the American continent and distributed throughout tropical and subtropical regions. It has been reported as a complex of cryptic species, and at least eight morphotypes have been described. Only one entity of this complex, formerly named Anastrepha fraterculus sp. 1, is present in Argentina. Previous cytogenetic studies on this morphotype described the presence of sex chromosome variation identified by chromosomal size and staining patterns. In this work, we expanded the cytological study of this morphotype by analyzing laboratory strains and wild populations to provide information about the frequency and geographic distribution of these sex chromosome variants. We analyzed the mitotic metaphases of individuals from four laboratory strains and five wild populations from the main fruit-producing areas of Argentina, including the northwest (Tucumán and La Rioja), northeast (Entre Ríos and Misiones), and center (Buenos Aires) of the country.

Results: In wild samples, we observed a high frequency of X1X1 (0.94) and X1Y5 (0.93) karyomorphs, whereas X1X2 and X1Y6 were exclusively found at a low frequency in Buenos Aires (0.07 and 0.13, respectively), Entre Ríos (0.16 and 0.14, respectively) and Tucumán (0.03 and 0.04, respectively). X2X2 and X2Y5 karyomorphs were not found in wild populations but were detected at a low frequency in laboratory strains. In fact, karyomorph frequencies differed between wild populations and laboratory strains. No significant differences among A. fraterculus wild populations were evidenced in either karyotypic or chromosomal frequencies. However, a significant correlation was observed between Y5 chromosomal frequency and latitude.

Conclusions: We discuss the importance of cytogenetics to understand the possible route of invasion and dispersion of this pest in Argentina and the evolutionary forces acting under laboratory conditions, possibly driving changes in the chromosomal frequencies. Our findings provide deep and integral genetic knowledge of this species, which has become of relevance to the characterization and selection of valuable A. fraterculus sp. 1 strains for mass rearing production and SIT implementation.

背景:Anastrepha fraterculus 在多个美洲国家被认定为检疫害虫。这种果蝇原产于美洲大陆,分布于热带和亚热带地区。据报道,它是一个隐蔽种的复合体,至少有 8 个形态型被描述过。该复合体中只有一个实体存在于阿根廷,原名为 Anastrepha fraterculus sp.之前对这一形态型的细胞遗传学研究描述了性染色体变异的存在,通过染色体大小和染色模式进行了鉴定。在这项工作中,我们通过分析实验室菌株和野生种群,扩大了对这一形态的细胞学研究,以提供有关这些性染色体变异的频率和地理分布的信息。我们分析了来自阿根廷西北部(图库曼和拉里奥哈)、东北部(恩特雷里奥斯和米西奥内斯)和中部(布宜诺斯艾利斯)等主要水果产区的四个实验室品系和五个野生种群个体的有丝分裂分裂相:在野生样本中,我们发现 X1X1(0.94)和 X1Y5(0.93)核形体的频率较高,而 X1X2 和 X1Y6 则仅在布宜诺斯艾利斯(分别为 0.07 和 0.13)、恩特雷里奥斯(分别为 0.16 和 0.14)和图库曼(分别为 0.03 和 0.04)发现,频率较低。在野生种群中没有发现 X2X2 和 X2Y5 核型,但在实验室菌株中发现的频率较低。事实上,野生种群和实验室菌株的核仁频率是不同的。A.fraterculus野生种群的核型频率和染色体频率均无明显差异。然而,Y5染色体频率与纬度之间存在明显的相关性:我们讨论了细胞遗传学的重要性,以了解这种害虫在阿根廷可能的入侵和扩散路线,以及在实验室条件下可能驱动染色体频率变化的进化力量。我们的研究结果为该物种提供了深入而全面的遗传学知识,对大规模饲养生产和实施 SIT 所需的有价值的 A. fraterculus sp.
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引用次数: 0
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BMC Genetics
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