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A Man with Acute Severe Pneumonia: Case Discussion from the University of Louisville Hospital 一名男子急性重症肺炎:路易斯维尔大学医院病例讨论
Pub Date : 2019-01-01 DOI: 10.18297/JRI/VOL3/ISS1/8
V. Nagarajan, Srinivas R Dontineni, V. Corcino, F. Arnold
Dr.Viswanathan Nagarajan (Infectious Diseases fellow): A 39-year-old previously healthy male presented to the emergency room for sudden onset left sided chest pain, cough with blood tinged sputum and shortness of breath, which started abruptly six hours prior to the presentation. He had been to another emergency room three days prior with myalgia, fever, headache, nausea, vomiting and diarrhea. Rapid influenza screen had been negative at that hospital. Nevertheless, he was discharged on oseltamivir. Now, shortness of breath was at rest and the chest pain was associated with cough and deep breathing. He also continued to have diarrhea and vomiting. Apart from having a 27 pack-year history of smoking, marijuana use and consuming a pint of alcohol every day, he had no history of intravenous drug use. He lived with his girlfriend, and denied promiscuous sexual activity or sex with males. He denied any travel outside of the US, or having pets at home. He had no known drug allergies. His temperature was 38.8° Celsius, heart rate 130 beats/min, respiratory rate 33 breaths/min, blood pressure 151/83 mm Hg, and oxygen saturation 93% on room air (FiO2 21%). The patient was in moderate respiratory distress and was seen using accessory muscles of respiration. He was alert, but unable to speak up as his voice was feeble. He had no signs of clubbing or generalized lymphadenopathy. No needle tracks were observed. Lung auscultation revealed equal air entry on both sides with no changes in his inspiration to expiration ratio. Bilateral crackles and wheezing were noted on the entire left side. On percussion, no dullness or resonance was noted.
viswanathan Nagarajan医生(传染病研究员):一名39岁的健康男性,因突然发作的左侧胸痛、咳嗽带血痰和呼吸短促而被送往急诊室,这些症状在就诊前6小时突然开始。三天前,他因肌痛、发烧、头痛、恶心、呕吐和腹泻去了另一家急诊室。那家医院的快速流感筛查结果为阴性。尽管如此,他还是继续服用奥司他韦出院了。现在,呼吸短促是静止的,胸痛与咳嗽和深呼吸有关。他还继续腹泻和呕吐。除了有27包年的吸烟、吸食大麻和每天喝一品脱酒的历史外,他没有静脉注射毒品的历史。他和女友住在一起,否认有滥交或与男性发生性关系。他否认曾出过美国,也没有在家里养宠物。他没有已知的药物过敏。体温38.8℃,心率130次/分,呼吸频率33次/分,血压151/83毫米汞柱,室内空气氧饱和度93% (FiO2 21%)。患者有中度呼吸窘迫,并使用呼吸副肌。他很警觉,但由于声音微弱,说不出话来。他没有棒状或全身淋巴结病的症状。未见针痕。肺听诊示两侧进气量相等,吸气呼气比无变化。整个左侧均出现双侧裂纹和喘息。在打击乐上,没有沉闷或共鸣。
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引用次数: 0
Carbapenem-resistant Enterobacteriaceae Infections: A Review of Epidemiology and Treatment Options 耐碳青霉烯肠杆菌科感染:流行病学和治疗方案综述
Pub Date : 2019-01-01 DOI: 10.18297/JRI/VOL3/ISS1/4
J. Harting
In 2013, the Centers for Disease Control (CDC) issued antimicrobial resistance guidance ranking carbapenemresistant Enterobacteriaceae (CRE), Neisseria gonorrhea, and Clostridium difficile as the three most urgent resistance threats in the United States [1]. CRE are defined as pathogens testing resistant to the following carbapenem antimicrobials (imipenem, meropenem, doripenem, or ertapenem) or are documented to produce a carbapenemase [2]. In the 2013 CDC report, an estimated 9,300 inpatient cases were predicted annually, and as of December 2017, CRE isolates have now been reported in all 50 states [3]. Enterobacteriaceae cause roughly 27.2% of healthcare-associated infections (HAIs) in acute care settings, with Klebsiella pneumoniae and E. coli as the predominant species [4]. Carbapenems are useful last line treatment options in multidrug-resistant gram-negative infections. Therefore, CRE are truly a healthcare threat.
2013年,美国疾病控制与预防中心(CDC)发布了抗菌素耐药性指南,将耐碳青霉烯类肠杆菌科(CRE)、淋病奈瑟菌(Neisseria gonorrhea)和艰难梭菌(Clostridium difficile)列为美国最紧迫的三大耐药性威胁[1]。CRE被定义为对以下碳青霉烯类抗菌剂(亚胺培南、美罗培南、多利培南或埃他培南)具有耐药性的病原体,或记录产生碳青霉烯酶[2]。在2013年疾病预防控制中心的报告中,估计每年有9300例住院病例,截至2017年12月,所有50个州都报告了CRE分离株[3]。在急性护理环境中,大约27.2%的卫生保健相关感染(HAIs)是由肠杆菌科引起的,其中肺炎克雷伯菌和大肠杆菌是主要菌种[4]。碳青霉烯类药物在耐多药革兰氏阴性感染中是有用的最后一线治疗选择。因此,CRE确实是一个医疗保健威胁。
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引用次数: 4
Research Support Infrastructure: Implementing A Clinical Research Coordinating Center 研究支持基础设施:实施临床研究协调中心
Pub Date : 2018-04-06 DOI: 10.18297/JRI/VOL2/ISS1/8
J. Ramirez, P. Peyrani, William A. Mattingly, F. Arnold, T. Wiemken, R. Kelley, L. Wolf, R. Carrico
Insufficient infrastructure is one of the challenges facing investigators in the field of clinical research. At the University of Louisville (UofL) Division of Infectious Diseases, we developed a multidisciplinary coordinating center with the aim to support investigators in all aspects of the clinical research process. The objective of this article is to describe the composition and the role of the different units of the UofL Clinical Research Coordinating Center. The different components of the Center can serve as a template for institutions interested in developing a clinical research support infrastructure. DOI: 10.18297/jri/vol2/iss1/8 Received Date: January 25, 2018 Accepted Date: February 1, 2018 Website: https://ir.library.louisville.edu/jri Affiliations 1University of Louisville Division of Infectious Diseases, Louisville, KY 40202, 2University of Louisville School of Public Health and Information Sciences, Department of Epidemiology and Population Health. Louisville KY 40202, 3St. Mary’s College of Maryland Department of Mathematics and Computer Science, St. Mary’s City, MD, 20686 ©2018, The Author(s).
基础设施不足是临床研究领域研究人员面临的挑战之一。在路易斯维尔大学(UofL)传染病部,我们建立了一个多学科协调中心,目的是在临床研究过程的各个方面支持研究人员。本文的目的是描述UofL临床研究协调中心不同单位的组成和作用。该中心的不同组成部分可以作为有兴趣开发临床研究支持基础设施的机构的模板。DOI: 10.18297/jri/vol2/iss1/8接收日期:2018年1月25日接收日期:2018年2月1日网站:https://ir.library.louisville.edu/jri隶属机构1路易斯维尔大学传染病科,路易斯维尔,肯塔基州40202;2路易斯维尔大学公共卫生与信息科学学院,流行病学与人口健康系。肯塔基州路易斯维尔40202,3St马里兰玛丽学院数学与计算机科学系,马里兰州圣玛丽市,20686©2018,作者。
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引用次数: 0
A Software Tool for Automated Upload of Large Clinical Datasets Using REDCap and the CAPO Database 使用REDCap和CAPO数据库自动上传大型临床数据集的软件工具
Pub Date : 2018-04-06 DOI: 10.18297/jri/vol2/iss1/7
William A. Mattingly, C. Sinclair, Danna Williams, Matthew Grassman, S. Furmanek, Kimberley A Buckner, Mohammad Tahboub
Introduction: Obtaining clinical data from healthcare sources is necessary for conducting clinical research. New technologies now allow for connecting a research database to Electronic Medical Records remotely, allowing the automatic import of clinical research data. In this paper we design and evaluate a REDCap extension to import clinical records from an external health database. Methods: Many hospital EHRs are designed to use secure file transfer protocol (SFTP) repositories for data communication. We develop a REDCap plugin to connect to an external SFTP file repository for the import of clinical record data. We use the CAPO instance of REDCap and a sample set of clinical pneumonia variables for the connection. Results: The plugin allows the input of record data in a much shorter time than traditional data entry in addition to being less error prone. However, the formatting of the data in the SFTP file repository must be exact in order for the import to be successful. This can require setup time on the part of EHR IT staff. Conclusion: Developing a direct connection from EHR to research database can be an effective way to lower the overhead for conducting clinical research. We demonstrate a means to do this using REDCap and SFTP. DOI: 10.18297/jri/vol2/iss1/7 Received Date: February 12, 2018 Accepted Date: February 27, 2018 Website: https://ir.library.louisville.edu/jri Affiliations: 1University of Louisville Division of Infectious Diseases, Louisville, KY 40202 ©2018, The Author(s). *Correspondence To: William A Mattingly, PhD 501 E Broadway, Suite 120B Louisville, KY 40202 bill.mattingly@louisville.edu 31 ULJRI Vol 2, (1) 2018 ORIGINAL RESEARCH of SFTP-2-REDCap, a REDCap plugin to support the fast upload of data into a REDCap clinical research project.
简介:从医疗保健来源获得临床数据是进行临床研究的必要条件。新技术现在允许将研究数据库远程连接到电子医疗记录,从而允许自动导入临床研究数据。在本文中,我们设计并评估了一个REDCap扩展,以从外部健康数据库导入临床记录。方法:许多医院的电子病历采用安全文件传输协议(SFTP)存储库进行数据通信。我们开发了一个REDCap插件来连接到外部SFTP文件存储库,以导入临床记录数据。我们使用REDCap的CAPO实例和临床肺炎变量的样本集进行连接。结果:与传统的数据输入相比,该插件可以在更短的时间内输入记录数据,并且不易出错。但是,为了导入成功,SFTP文件存储库中的数据格式必须精确。这可能需要EHR IT人员的设置时间。结论:建立电子病历与研究数据库的直接连接是降低临床研究费用的有效途径。我们演示了一种使用REDCap和SFTP的方法。DOI: 10.18297/jri/vol2/iss1/7接收日期:2018年2月12日接收日期:2018年2月27日网站:https://ir.library.louisville.edu/jri隶属机构:1路易斯维尔大学传染病科,路易斯维尔,肯塔基州40202©2018,作者。*通信给:William A Mattingly, PhD 501 E Broadway, Suite 120B Louisville, KY 40202 bill.mattingly@louisville.edu 31 ULJRI Vol 2, (1) 2018 src -2-REDCap的原创研究,一个REDCap插件,支持快速上传数据到REDCap临床研究项目。
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引用次数: 2
Duration of antibiotic therapy for patients with bacteremic Staphylococcus aureus community-acquired pneumonia 细菌性金黄色葡萄球菌社区获得性肺炎患者的抗生素治疗时间
Pub Date : 2018-04-06 DOI: 10.18297/JRI/VOL2/ISS1/1
J. Ramirez, T. File, D. Musher
In a recent review article of the causes of community-acquired pneumonia (CAP) in adults, Musher et al. reported that S. aureus is now the third most common bacterial pathogen causing CAP [1]. Physicians treating patients with CAP will be confronted with the question of how best to treat a hospitalized patient with bacteremic S. aureus CAP. In this opinion piece, we will review current controversies on the topic and offer our point of view regarding management and treatment.
在最近一篇关于成人社区获得性肺炎(CAP)病因的综述文章中,Musher等人报道金黄色葡萄球菌现在是导致CAP[1]的第三大常见细菌病原体。治疗CAP患者的医生将面临如何最好地治疗患有细菌性金黄色葡萄球菌CAP的住院患者的问题。在这篇观点文章中,我们将回顾当前关于该主题的争议,并就管理和治疗提供我们的观点。
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引用次数: 3
Bacteremic Pneumococcal Pneumonia: a Longitudinal Study in 279 Adult Patients from a Single Center 细菌性肺炎球菌肺炎:来自单一中心的279名成人患者的纵向研究
Pub Date : 2018-04-06 DOI: 10.18297/jri/vol2/iss1/10
J. Gentile, C. Hernandez, M. Sparo, E. Rodríguez, C. Ceriani, Florencia Bruggesser
Background: Bacteremic pneumococcal pneumonia (BPP) is the most common clinical presentation of invasive pneumococcal disease (IPD). Although it has been extensively studied, there is little knowledge in our region in relation to burden of disease, demographic and outcome features. Methods: We conducted a prospective, longitudinal, observational study from 1989 to 2015 in adult patients with BPP, in order to deepen our knowledge of the characteristics of this disease in our community hospital in Tandil, Argentina. Results: 279 patients were included. The mean incidence was 2.8/1000 admissions with a sharp decrease in the last two years, reaching 0.8/1000 admissions. Mean patient age was 60 years. Comorbidities were found in 65% of the cases. Non-respiratory symptoms occurred in 50% of cases. Infiltrates on chest x ray were predominantly unilateral (75%) and lobar (57%). Regarding severity, a low PSI score I-II-II was found in 178 patients (64%), 60 (22%) were admitted to ICU, 40 (14%) required mechanical ventilation, and 21 (8%) developed empyema. Penicillin resistance was not found. Mortality was 18% (49/279), and by a multivariate analysis it was associated with confusion (OR= 5.44), age>80 years (OR =5.72), leukopenia (OR =5.73) and dyspnea (OR=7.87). Conclusions: In this study of 279 bacteremic pneumococcal pneumonia we reinforce previous knowledge on this disease regarding incidence and clinical features and confirm a considerable an early mortality associated to age and severity of disease at onset. Recent changes in incidence of BPP in adults could be secondary to herd effect of PVC 13 a vaccine that is mandatory in children in our community since 2012. DOI: 10.18297/jri/vol2/iss1/10 Received Date: February 13, 2018 Accepted Date: March 29, 2018 Website: https://ir.library.louisville.edu/jri Affiliations: 1 Servicio de Infectología, Hospital Santamarina, Tandil, Argentina 2 Laboratorio de Microbiología, Hospital Santamarina, Tandil, Argentina 3 Area de Bioestadística, FCV-UNCPBA 4 Area de virología, FCV-UNCPBA, CIVETAN-CONICET ©2018, The Author(s). 47 ULJRI Vol 2, (1) 2018 ORIGINAL RESEARCH *Correspondence To: Dr. Jorge Gentile Work Address: Uriburu 950 Tandil CP 7000-Argentina, Work Email: gentilejorgeh@gmail.com treated in ambulatory setting between 1989 and 2015. Exclusion criteria: having been hospitalized in the last 30 days, or presented with any other evidence suggestive of nosocomial pneumonia, severe immunosuppression such in transplantation, AIDS or receiving chemotherapy or other immunosuppressive drugs. Study definitions/variables Pneumonia was defined as the presence of a new infiltrate on chest radiograph plus two or more of the following clinical manifestations including: fever (axillary temperature >37.8oC), cough, production of purulent sputum, pleuritic chest pain and dyspnoea. BPP was defined as a diagnosis of pneumonia with one or more positive blood cultures for S. pneumoniae. Identification of patients with BPP: one o
背景:细菌性肺炎球菌性肺炎(BPP)是侵袭性肺炎球菌病(IPD)最常见的临床表现。尽管对这一问题进行了广泛的研究,但我们区域对疾病负担、人口和结果特征的了解甚少。方法:为了加深我们对阿根廷坦迪尔社区医院BPP成年患者特征的了解,我们对1989 - 2015年BPP患者进行了前瞻性、纵向、观察性研究。结果:共纳入279例患者。平均发病率为2.8/1000,近两年急剧下降,为0.8/1000。患者平均年龄60岁。65%的病例存在合并症。50%的病例出现非呼吸道症状。胸部x线上的浸润主要是单侧(75%)和大叶(57%)。在严重程度方面,178例(64%)患者PSI评分为I-II-II, 60例(22%)入住ICU, 40例(14%)需要机械通气,21例(8%)发生脓胸。未发现青霉素耐药。死亡率为18%(49/279),通过多因素分析,与混淆(OR= 5.44)、年龄>80岁(OR= 5.72)、白细胞减少(OR= 5.73)和呼吸困难(OR=7.87)相关。结论:在这项对279例细菌性肺炎球菌肺炎的研究中,我们加强了以前对这种疾病的发病率和临床特征的认识,并确认了发病时年龄和疾病严重程度相关的相当大的早期死亡率。最近成人BPP发病率的变化可能继发于PVC 13疫苗的群体效应,PVC 13疫苗自2012年起在我们社区的儿童中强制接种。DOI: 10.18297/jri/vol2/iss1/10收件日期:2018年2月13日收件日期:2018年3月29日网站:https://ir.library.louisville.edu/jri所属机构:1 Servicio de Infectología, Hospital Santamarina, Tandil, Argentina 2 Laboratorio de Microbiología, Hospital Santamarina, Tandil, Argentina 3 Area de Bioestadística, FCV-UNCPBA 4 Area de virología, FCV-UNCPBA, CIVETAN-CONICET©2018,作者。通讯作者:Dr. Jorge Gentile工作地址:Uriburu 950 Tandil CP 7000-阿根廷,工作邮箱:gentilejorgeh@gmail.com 1989 - 2015年在门诊治疗。排除标准:在过去30天内住院,或有任何其他证据表明有院内肺炎、严重免疫抑制(如移植、艾滋病)或接受化疗或其他免疫抑制药物。研究定义/变量肺炎被定义为胸片上出现新的浸润并伴有以下两种或两种以上的临床表现,包括:发热(腋窝温度>37.8℃)、咳嗽、产生化脓性痰、胸膜炎性胸痛和呼吸困难。BPP被定义为一种或多种肺炎链球菌血培养阳性的肺炎诊断。BPP患者的识别:本文的作者之一(CH或JG)或住院医师每天都会检查医院的入院情况,包括假期。当从血培养中分离出肺炎链球菌时,实验室尽快通知。在入院后48-72h内查阅病历资料并填写表格。所有患者均由作者单独询问、检查和跟踪。(JG或CH)。当一名有BPP标准的患者没有入院并被送回家时,我们努力联系他以协助并将他纳入研究。以医院为基础的发病率计算BPP/每年入院的成人患者数× 1000。登记季节分布。人口发病率是在2010 - 2015年期间计算的,加入了我们在城市其他两个中心入院的BPP患者系列,并考虑了这一时期的人口变化。以下变量在入院时直接从受试者处记录,或从图表文件或亲属访谈中记录:年龄、性别、会诊前疾病持续时间、潜在慢性疾病,如糖尿病、慢性肾衰竭、充血性心力衰竭、慢性肺病、神经系统疾病、恶性肿瘤、HIV感染、酗酒、肝病、吸烟、既往抗微生物治疗以及临床体征和症状。住在养老院或无家可归者也被登记在案。听诊有沉闷的叩击声和支气管呼吸音者视为临床巩固。低血压定义为收缩期动脉张力低于90mmHg。腹痛、呕吐、低血压和精神错乱被认为是非肺部症状。如果患者具有以下四种特征:发热、胸膜炎性胸痛、胸片上的大叶实变和白细胞增多,则考虑为典型肺炎球菌感染。所有胸腔积液患者均行胸腔积液检查。
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引用次数: 0
Case 2-2017: An HIV-Positive Patient with COPD Admitted to the ICU with Respiratory Failure 病例2-2017:一名hiv阳性COPD患者因呼吸衰竭入住ICU
Pub Date : 2018-04-06 DOI: 10.18297/jri/vol2/iss1/11
B. Puskur, V. Corcino, Srikanth Ramachandruni, V. Nagarajan, F. Arnold
Dr Bhavani Puskur (Infectious Diseases (ID) fellow): A 54-year-old male active smoker with a history of chronic obstructive lung disease (COPD) on 2 L/min of home oxygen and human immunodeficiency virus-1 (HIV) on antiretroviral therapy with a recent CD4 count of 482 (26%) cells/cc and a suppressed viral load, presented to the Emergency Room (ER) of University of Louisville Hospital with a cough productive of thick, yellow phlegm, dyspnea for 4 days and chest tightness for one day. He complained of having a sore throat, rhinorrhea and nasal congestion during the previous week. He had been using his inhalers at home without significant relief. He denied fever or chills. He had been to the ER multiple times with worsening dyspnea and nonproductive cough, which improved with prednisone and bronchodilators. He declined frequent admission, but this was his third visit to the ER in the last two days; each via emergency medical services transportation. In the ER, his temperature was 36.6°C, blood pressure was 210/141 mmHg, heart rate was 120 beats/min, and respiratory rate 16/min. His oxygen saturation was 98% while wearing a non-rebreather mask. On physical examination, there was no pharyngeal erythema or exudate and sinuses were nontender. He had pursed lip breathing with significant inspiratory wheezing. After administration of a breathing treatment and steroids, there was improved aeration throughout all lung fields with decreased, but still diffuse, expiratory wheezing. A chest X-ray was obtained. (Figure 1) His electrocardiography was unchanged, and troponins were negative. He was admitted to the Intensive Care Unit (ICU) for use of non-invasive ventilation.
博士Bhavani Puskur(传染病(ID)研究员):一名54岁男性主动吸烟史的慢性阻塞性肺疾病(COPD)在2 L / min的氧气和人类免疫缺陷virus-1 (HIV)在482年最近的CD4细胞计数的抗逆转录病毒治疗(26%)细胞/ cc和抑制病毒载量,呈现在路易斯维尔大学医院的急诊室(ER)与咳嗽生产厚,4天黄痰、呼吸困难,胸闷了一天。他说上个星期喉咙痛、流鼻涕、鼻塞。他一直在家里使用吸入器,但没有明显缓解。他否认发烧或发冷。他曾多次因呼吸困难加重和无生产性咳嗽就诊,经强的松和支气管扩张剂治疗后好转。他拒绝频繁入院,但这是他在过去两天内第三次去急诊室;每个都通过紧急医疗服务运输。在急诊室,患者体温36.6℃,血压210/141 mmHg,心率120次/分,呼吸频率16次/分。他戴着非呼吸面罩时血氧饱和度为98%。体格检查未见咽部红斑或渗出,鼻窦无压痛。他撅起嘴唇呼吸,伴有明显的吸气式喘息。在给予呼吸治疗和类固醇治疗后,所有肺区通气改善,呼吸性喘息减少,但仍然弥漫性喘息。胸部x光片。(图1)心电图无变化,肌钙蛋白阴性。他被送入重症监护室(ICU)使用无创通气。
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引用次数: 0
Adult Patients Living With Human Immunodeficiency Virus Hospitalized for Community-Acquired Pneumonia in the United States: Incidence and Outcomes 在美国因社区获得性肺炎住院的携带人类免疫缺陷病毒的成年患者:发病率和结果
Pub Date : 2018-04-06 DOI: 10.18297/JRI/VOL2/ISS1/4
Leslie A Beavin, S. Furmanek, P. Peyrani, Anupama Raghuram, F. Arnold, Mark V. Burns, J. Ramirez
Background: Community-acquired pneumonia (CAP) is a common infectious reason for hospitalization of adults in the United States (US), including those with Human Immunodeficiency Virus (HIV). While there are studies detailing the incidence and outcomes for all adults with CAP we are not aware of a recent study detailing incidence and outcomes in adult HIV patients hospitalized with CAP. The objectives of this study were (1) to define the current incidence and outcomes of adult HIV patients hospitalized with CAP in Louisville, Kentucky, and (2) to estimate the burden of CAP in the US HIV adult population. Methods: This was a secondary analysis of The University of Louisville Pneumonia Study; a prospective population-based cohort study of all hospitalized adults with CAP who were residents of Louisville, Kentucky, from 1 June 2014 to 31 May 2016. Results: A total of 110 unique patients living with HIV were hospitalized with CAP during our two-year study. The annual incidence of adults living with HIV hospitalized with CAP is estimated to be 1,950 per 100,000. Of the estimated 1.1 million adults living with HIV in the US currently we predict that 21,450 will be hospitalized with CAP annually. The median time to clinical stability in adult patients living with HIV hospitalized with CAP was 2 (IQR: [1, 3]) days. The median length of stay for adult patients living with HIV hospitalized with CAP was 4 (IQR: [3, 7]) days. Mortality occurred as follows; in-hospital: 1.8%, 30-day 6.8%, 6-month 15.5%, and 1 year 20.2%. Conclusion: The estimated annual incidence of adult patients living with HIV and hospitalized with CAP was found to be 1,950 per 100,000 suggesting that 21,450 adults living with HIV will be admitted with CAP yearly across the US. This is a similar incidence to that recently predicted for the elderly. Mortality occurred as follows; in-hospital: 1.8%, 30-day 6.8%, 6-month 15.5%, and 1 year 20.2%. Our 30-day mortality rate for adult patients living with HIV hospitalized for CAP was similar to other figures in the literature. DOI: 10.18297/jri/vol2/iss1/4 Received Date: February 12, 2018 Accepted Date: March 16, 2018 Website: https://ir.library.louisville.edu/jri Affiliations: 1University of Louisville Division of Infectious Diseases, Louisville, KY 40202 ©2018, The Author(s). 17 ULJRI Vol 2, (1) 2018 ORIGINAL RESEARCH *Correspondence To: Leslie Beavin, MD Assistant Professor of Medicine Division of Infectious Diseases, University of Louisville Work Address: 501 E Broadway, Suite 120 Louisville, KY 40202 Work Email: labeav03@louisville.edu number (SSN), or who were in the correctional system were not included. Data was collected on participants from the medical record including; age, sex, race, body mass index (BMI), HIV status, presence of malignancy, presence of renal disease, presence of heart disease, presence of chronic obstructive pulmonary disease (COPD), history of cerebrovascular event (CVA), smoking status, presence of diabetes, tempera
背景:社区获得性肺炎(CAP)是美国成年人住院治疗的常见感染性原因,包括人类免疫缺陷病毒(HIV)感染者。虽然有研究详细说明了所有成年CAP患者的发病率和结果,但我们不知道最近有一项研究详细说明了CAP住院的成年HIV患者的发病率和结果。本研究的目的是(1)确定目前在肯塔基州路易斯维尔因CAP住院的成年HIV患者的发病率和结果,以及(2)估计CAP在美国成年HIV人群中的负担。方法:这是路易斯维尔大学肺炎研究的二次分析;2014年6月1日至2016年5月31日,对肯塔基州路易斯维尔所有住院的CAP患者进行了一项基于人群的前瞻性队列研究。结果:在我们为期两年的研究中,共有110名独特的HIV患者因CAP住院。感染艾滋病毒的成人每年因CAP住院的发病率估计为每10万人1 950人。目前,在美国估计有110万成年人感染艾滋病毒,我们预测每年有21,450人将因CAP住院。CAP住院的成年HIV患者达到临床稳定的中位时间为2天(IQR:[1,3])。成年HIV感染者CAP住院的中位住院时间为4天(IQR:[3,7])。死亡率情况如下:住院:1.8%,30天6.8%,6个月15.5%,1年20.2%。结论:估计每年感染HIV并因CAP住院的成年患者的发病率为每100,000人中有1,950人,这表明美国每年有21,450名感染HIV的成年人将因CAP入院。这与最近对老年人的预测相似。死亡率情况如下:住院:1.8%,30天6.8%,6个月15.5%,1年20.2%。我们因CAP住院的成年HIV患者的30天死亡率与文献中的其他数字相似。DOI: 10.18297/jri/vol2/iss1/4收件日期:2018年2月12日收件日期:2018年3月16日网站:https://ir.library.louisville.edu/jri隶属机构:1路易斯维尔大学传染病科,路易斯维尔,肯塔基州40202©2018,作者。通讯作者:Leslie Beavin,医学博士传染病医学系助理教授,路易斯维尔大学工作地址:501 E Broadway, Suite 120 Louisville, KY 40202工作邮箱:labeav03@louisville.edu号码(SSN),或在惩教系统的人不包括在内。从医疗记录中收集的参与者数据包括;年龄、性别、种族、身体质量指数(BMI)、HIV感染、恶性肿瘤、肾脏疾病、心脏病、慢性阻塞性肺疾病(COPD)、脑血管病史(CVA)、吸烟、糖尿病、体温、呼吸频率、血压、心率、血清碳酸氢盐、尿素氮、血清葡萄糖、血清红细胞压积、血清钠、入院地点、精神状态改变(AMS)、血管加压药物需求、通风机要求,以及PSI评分。
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引用次数: 0
Clinical Research: From Idea to Publication 临床研究:从想法到发表
Pub Date : 2018-04-06 DOI: 10.18297/jri/vol2/iss1/12
J. Ramirez
56 ULJRI Vol 2, (1) 2018 Affiliations: 1Division of Infectious Diseases, Department of Medicine, School of Medicine, University of Louisville, Louisville, KY 40202 DOI: 10.18297/jri/vol2/iss1/12 Abstract Julio A. Ramirez, M.D., FACP, Professor of Medicine/Associate Professor of Microbiology and Immunology; Chief, Division of Infectious Diseases; Director, Infectious Diseases Fellowship Training Program and Founding Director, Global Health Initiative at The University of Louisville, presented “Clinical Research: From Idea to Publication” at University of Louisville Department of Medicine Grand Rounds on February 15, 2018. The talk focused on performing an overview of clinical study designs, describing the planning and performing of a clinical study, reviewing the process for statistical and clinical analysis, and presenting the structure of a Clinical Research Coordinating Center.
56 ULJRI Vol 2,(1) 2018隶属单位:1路易斯维尔大学医学院感染性疾病学系,路易斯维尔,肯塔基州40202 DOI: 10.18297/jri/vol2/iss1/12摘要:Julio A. Ramirez, M.D, FACP,医学教授/微生物学和免疫学副教授;传染病司司长;路易斯维尔大学传染病奖学金培训项目主任和全球健康倡议创始主任,于2018年2月15日在路易斯维尔大学医学部大轮会议上发表了“临床研究:从想法到出版”。讲座的重点是临床研究设计的概述,描述临床研究的计划和执行,回顾统计和临床分析的过程,并介绍临床研究协调中心的结构。
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引用次数: 1
Myobacterium kansasii as the Primary Etiology of Pulmonary Infections due to Non-Tuberculous Mycobacterium (NTM) in Patients WIthout Human Immunodeficiency Virus (HIV): Experience from a Center in Buenos Aires, Argentina 堪萨斯分枝杆菌作为无人类免疫缺陷病毒(HIV)患者非结核分枝杆菌(NTM)引起肺部感染的主要病因:来自阿根廷布宜诺斯艾利斯一个中心的经验
Pub Date : 2018-04-06 DOI: 10.18297/jri/vol2/iss1/5
G. Yusti, M. Heres, Alejandra González, Mariano Fielli, A. Ceccato, A. Zapata
Introduction: Pulmonary diseases due to non-tuberculous mycobacterium (NTM) lung infection in HIV-negative patients are rarely described in the literature. Currently, NTM consist of more than 150 species, and they are globally ubiquitous in both natural and man-made environments.The objective of this study was to define the most frequent species of NTM causing pulmonary disease in HIVnegative patients in the city of Buenos Aires, Argentina. The prevalence of pulmonary diseases caused by NTM is difficult to determine since the isolation of NTM does not necessarily indicate disease. Methods: A retrospective review of all the respiratory cultures positive for NTM in the Bacteriology Laboratory of Posadas Hospital between January 2010 and December 2015 was performed. 31 patients without Human Immunodeficiency Virus (HIV) from whom NTM was isolated in respiratory samples, which fulfilled diagnostic criteria for NTM disease were included. Results: The mean age was 50 years at the time of the diagnosis (SD ± 17.2); and 19 patients (61.3%) were males. Mycobacterium kansasii was the most commonly isolated NTM (68%) followed by Mycobacterium avium Complex (MAC) (19%). M. kansasii was the most common cause of pulmonary infection by NTM in these HIV-negative patients. Cultures should be performed to identify the species and to treat accordingly. 46% of the patients included in the study, there was no evidence of risk factors. Only 32% of the subjects had respiratory comorbidities, and the most common radiologic finding was cavitation (55%). Discussion: Our study indicates that M. kansasii is the primary etiology of NTM pulmonary disease in HIV-negative patients in our service area in Buenos Aires. This finding supports the consideration that patients with symptoms compatible with pulmonary tuberculosis should also be evaluated for NTM with appropriate acid-fast bacilli cultures, as treatment regimens differ vastly according to the specific pathogen isolated, although clinical and radiographic presentations may have overlapping features. The possibility of M. kansasii pulmonary disease or other NTM should be considered in patients treated empirically for TB without appropriate clinical response. DOI: 10.18297/jri/vol2/iss1/5 Received Date: February 12, 2018 Accepted Date: March 17, 2018 Website: https://ir.library.louisville.edu/jri Affiliations: 1Alejandro Posadas National Hospital, Buenos Aires, Argentina ©2018, The Author(s). 21 ULJRI Vol 2, (1) 2018 ORIGINAL RESEARCH *Correspondence To: Alejandra González Work Address: Alejandro Posadas National Hospital, Buenos Aires, Argentina, Work Email: alestork@yahoo.com.ar common NTM cause of pulmonary disease worldwide [5]. It is difficult to compare the incidence and prevalence of NTM diseases across geographic areas. Because reporting NTM disease to public health authorities is not required in most countries, studies of the incidence and prevalence of NTM disease are performed differently in different countries.
文献中很少描述hiv阴性患者因非结核分枝杆菌(NTM)肺部感染而引起的肺部疾病。目前,NTM由150多种组成,它们在全球自然和人为环境中普遍存在。本研究的目的是确定阿根廷布宜诺斯艾利斯市hiv阴性患者中最常见的NTM引起肺部疾病的种类。NTM引起的肺部疾病的患病率很难确定,因为NTM的分离并不一定意味着疾病。方法:回顾性分析2010年1月至2015年12月Posadas医院细菌学实验室所有NTM呼吸道培养阳性病例。本研究纳入31例呼吸道样本中分离到NTM的非HIV患者,符合NTM病诊断标准。结果:确诊时平均年龄50岁(SD±17.2);男性19例(61.3%)。最常见的NTM是堪萨斯分枝杆菌(68%),其次是鸟分枝杆菌复合体(MAC)(19%)。在这些hiv阴性患者中,堪萨斯分枝杆菌是NTM肺部感染的最常见原因。应进行培养以确定菌种并进行相应的处理。研究中46%的患者,没有危险因素的证据。只有32%的受试者有呼吸道合并症,最常见的放射学发现是空化(55%)。讨论:我们的研究表明,M. kansasii是我们在布宜诺斯艾利斯服务地区hiv阴性患者NTM肺病的主要病因。这一发现支持了这样一种观点,即症状与肺结核相一致的患者也应该通过适当的抗酸杆菌培养来评估NTM,因为根据分离的特定病原体,治疗方案有很大差异,尽管临床和放射学表现可能有重叠的特征。在经验治疗的结核病患者没有适当的临床反应时,应考虑堪萨斯分枝杆菌肺病或其他NTM的可能性。DOI: 10.18297/jri/vol2/iss1/5收件日期:2018年2月12日收件日期:2018年3月17日网站:https://ir.library.louisville.edu/jri隶属机构:1Alejandro Posadas National Hospital, Buenos Aires, Argentina©2018,作者。通讯作者:Alejandra González工作地址:Alejandro Posadas National Hospital, Buenos Aires, Argentina工作邮箱:alestork@yahoo.com.ar全球肺部疾病常见的NTM病因[5]。很难比较不同地理区域NTM疾病的发病率和流行程度。由于大多数国家不要求向公共卫生当局报告NTM疾病,因此对NTM疾病发病率和流行率的研究在不同国家开展的方式不同。为了比较关于在有限地理区域内NTM发病率和流行率随时间变化的报告,必须比较使用相同方法的报告。许多流行病学报告和综述表明,自20世纪50年代以来,NTM疾病一直在增加[1,6]。NTM分离的临床意义并不总是明确的,由于几个因素,特别是难以与定植区分,难以评估NTM病的发病率或患病率。虽然自20世纪50年代以来NTM菌落的检测一直在增加[6],但尚不清楚为什么NTM病在人类中增加。有几个潜在的促成因素,例如,(i)环境中分枝杆菌感染源的增加,(ii)易感个体的增加,例如人类免疫缺陷病毒(HIV)阳性的个体,(iii)检测方法和实验室设备灵敏度的改进,(iv)慢性结构性肺病患者的预期寿命延长,(v)对NTM疾病的认识提高[1,7]。在许多国家,特别是结核病高负担地区,结核病的诊断主要基于痰涂片中抗酸杆菌的检测,以及它们的症状和胸部x线检查结果[1]。NTM引起的肺部疾病可推定为肺结核(TB),因为痰中微生物涂片不能区分NTM与TB,且临床表现相似。在拉丁美洲,NTM的流行率估计远低于结核病。阿根廷的结核病发病率为2391 / 10万居民,区域差异很大。在布宜诺斯艾利斯省,每10万居民中就有3027人患病。 不同地理区域导致NTM疾病的分枝杆菌种类的相对丰度存在差异,NTM的分布与土壤和水分布系统等环境因素的变异最为显著[1,7]。在hiv阴性患者中,NTM引起的肺部疾病在文献中很少有报道[8]。本研究的目的是确定阿根廷布宜诺斯艾利斯市hiv阴性患者中最常见的NTM引起肺部疾病的种类。材料与方法回顾性分析2010年1月至2015年12月Posadas医院细菌学实验室所有NTM呼吸道培养阳性病例。波萨达斯医院是一家高度复杂的医院,拥有500张住院床位,服务区覆盖约440万人口。本研究已获得IRB批准。年龄大于15岁且符合ATS/IDSA对NTM所致肺部疾病诊断标准的患者纳入研究[2]。研究中的所有患者都进行了HIV筛查,我们排除了那些呈现HIV血清学阳性的患者。采用BACTEC MGIT(荧光)培养基和固体培养基(Lowenstein Jensen)进行培养。采用横向流动免疫法(LFA)对阳性培养物进行区分NTM和TB。分析以下变量:年龄、性别、NTM种类、临床和放射学特征。对于分类变量,我们使用百分比作为频率测量。根据样本分布,连续变量表示为平均值或中位数。采用计算环境R 3.4.3版软件进行统计分析[9]。
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引用次数: 1
期刊
The University of Louisville journal of respiratory infections
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