Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100401
Nina Konovalova, on behalf of the SHiP Collaboration
The new general-purpose fixed target experiment SHiP (Search for Hidden Particles) at the CERN SPS (Super Proton Synchrotron) is aimed at research in the field of Beyond Standard Model (BSM) physics and of tau-neutrino physics. The Emulsion Neutrino Detector will be one of the main elements in the SHiP detector design. It is intended for search for Dark Matter scattering on electrons of nuclear emulsion and for tau-neutrino and anti tau-neutrino direct observation, and study their properties and the cross section. The main source of both hidden particle and tau-neutrino event fluxes is the decay of charmed particles produced in the SHiP proton target. The detection of the production and decay of charmed hadrons in the target will be performed through nuclear emulsion films employed in the Emulsion Cloud Chamber target structure. The paper describes the basic principles of the SHiP neutrino emulsion detector and some measures for its optimization.
{"title":"Emulsion detector for future experiment SHiP at CERN","authors":"Nina Konovalova, on behalf of the SHiP Collaboration","doi":"10.1016/j.pisc.2019.100401","DOIUrl":"10.1016/j.pisc.2019.100401","url":null,"abstract":"<div><p>The new general-purpose fixed target experiment SHiP (Search for Hidden Particles) at the CERN SPS (Super Proton Synchrotron) is aimed at research in the field of Beyond Standard Model (BSM) physics and of tau-neutrino physics. The Emulsion Neutrino Detector will be one of the main elements in the SHiP detector design. It is intended for search for Dark Matter scattering on electrons of nuclear emulsion and for tau-neutrino and anti tau-neutrino direct observation, and study their properties and the cross section. The main source of both hidden particle and tau-neutrino event fluxes is the decay of charmed particles produced in the SHiP proton target. The detection of the production and decay of charmed hadrons in the target will be performed through nuclear emulsion films employed in the Emulsion Cloud Chamber target structure. The paper describes the basic principles of the SHiP neutrino emulsion detector and some measures for its optimization.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100401"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100401","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"48835863","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100398
S.-L. Guo , T. Doke , D.-H. Zhang , B.-L. Chen , L. Li , J.-S. Li , N. Hasebe , N. Yasuda , T. Murakami
The number (n) and diameter (d) of superheated droplets in bubble detectors of Type T-12 have been determined with high-energy heavy ions 56Fe, 84Kr and 132Xe at HIMAC accelerator in the National Institute of Radiological Sciences (NIRS), Chiba Japan. The approach to determining the number and diameter of superheated droplets is based on determination of (1) the average gap distance (g) between two neighboring bubbles in a track of high-energy heavy ion and (2) the volume ratio (VL/V) of superheated droplets to the whole volume of the detector. The volume ratio is known from preparation process of bubble detectors. The average gap distance can be obtained from the mean of gap distances measured between two neighboring bubbles in a track of heavy ion. From g and VL/V one can obtain the two basic parameters n and d of the bubble detector, which are unknown due to invisibility of superheated droplets in bubble detector. Four batches of bubble detectors of Type T-12 were calibrated by this approach. It shows that the average gap distance of bubbles in the detectors is ∼1 mm, the volume density (number n) of superheated droplets in the detectors is ∼106 cm−3 and the diameter of superheated droplets is in the range from ∼30 to 50 μm. It also shows that the two parameters n and d are different from batch to batch of the detectors when VL/V is the same. Therefore, one should make a calibration of bubble detectors at accelerator with heavy ions before using the detectors. This property is similar to that of etch track detectors (SSNTD).
{"title":"Determination of number and diameter of superheated droplets in bubble detectors (BD) of Type T-12 by irradiation with high energy heavy ions 56Fe, 84Kr and 132Xe at accelerator","authors":"S.-L. Guo , T. Doke , D.-H. Zhang , B.-L. Chen , L. Li , J.-S. Li , N. Hasebe , N. Yasuda , T. Murakami","doi":"10.1016/j.pisc.2019.100398","DOIUrl":"10.1016/j.pisc.2019.100398","url":null,"abstract":"<div><p>The number (<em>n</em>) and diameter (<em>d</em>) of superheated droplets in bubble detectors of Type T-12 have been determined with high-energy heavy ions <sup>56</sup>Fe, <sup>84</sup>Kr and <sup>132</sup>Xe at HIMAC accelerator in the National Institute of Radiological Sciences (NIRS), Chiba Japan. The approach to determining the number and diameter of superheated droplets is based on determination of (1) the average gap distance (<em>g</em>) between two neighboring bubbles in a track of high-energy heavy ion and (2) the volume ratio (<em>V<sub>L</sub>/V</em>) of superheated droplets to the whole volume of the detector. The volume ratio is known from preparation process of bubble detectors. The average gap distance can be obtained from the mean of gap distances measured between two neighboring bubbles in a track of heavy ion. From <em>g</em> and <em>V<sub>L</sub>/V</em> one can obtain the two basic parameters <em>n</em> and <em>d</em> of the bubble detector, which are unknown due to invisibility of superheated droplets in bubble detector. Four batches of bubble detectors of Type T-12 were calibrated by this approach. It shows that the average gap distance of bubbles in the detectors is ∼1 mm, the volume density (number <em>n</em>) of superheated droplets in the detectors is ∼10<sup>6</sup> cm<sup>−3</sup> and the diameter of superheated droplets is in the range from ∼30 to 50 μm. It also shows that the two parameters <em>n</em> and <em>d</em> are different from batch to batch of the detectors when <em>V<sub>L</sub>/V</em> is the same. Therefore, one should make a calibration of bubble detectors at accelerator with heavy ions before using the detectors. This property is similar to that of etch track detectors (SSNTD).</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100398"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100398","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"49016551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100405
M. Mkimel , M.R. Mesradi , R. El Baydaoui , Y. Toufique , Z. Aitelcadi , A. El Kharrim , A. Hilali
Absorbed dose during a CT exam can be estimated by the computed tomography dose index (CTDI). The aim of this study is to validate a simulated CTDI with measured data for a 16-slice CT system. To measure the CTDI we have used an ion chamber, electrometer and two polymethylmethacrylate (PMMA) phantoms (head and body). GATE (GEANT4 Application for Tomographic Emission) platform is a Monte Carlo code for medical physics applications, especially dosimetry studies. CTDI and CTDIw were recorded to compare simulated results for different X-ray tube currents and voltages with experimental data at different positions in the phantom. The results obtained for all conditions applied show a difference less than 2.6% and 4.3% for head and body phantom, respectively. It was demonstrated that GATE is a good tool to simulate CTDIw values and to study of the influence of tube current and voltage on the absorbed dose.
CT检查时的吸收剂量可以通过计算机断层扫描剂量指数(CTDI)来估计。本研究的目的是用16层CT系统的测量数据验证模拟CTDI。为了测量CTDI,我们使用了一个离子室,静电计和两个聚甲基丙烯酸甲酯(PMMA)模型(头部和身体)。GATE (GEANT4 Application for tomography Emission)平台是一个用于医学物理应用,特别是剂量学研究的蒙特卡罗代码。记录CTDI和CTDIw,将不同x射线管电流和电压下的模拟结果与幻体不同位置的实验数据进行比较。在所有条件下获得的结果表明,头部和身体幻觉的差异分别小于2.6%和4.3%。结果表明,GATE是模拟CTDIw值和研究管电流和电压对吸收剂量影响的良好工具。
{"title":"Assessment of computed tomography dose index (CTDI) using the platform GEANT4/GATE","authors":"M. Mkimel , M.R. Mesradi , R. El Baydaoui , Y. Toufique , Z. Aitelcadi , A. El Kharrim , A. Hilali","doi":"10.1016/j.pisc.2019.100405","DOIUrl":"10.1016/j.pisc.2019.100405","url":null,"abstract":"<div><p>Absorbed dose during a CT exam can be estimated by the computed tomography dose index (CTDI). The aim of this study is to validate a simulated CTDI with measured data for a 16-slice CT system. To measure the CTDI we have used an ion chamber, electrometer and two polymethylmethacrylate (PMMA) phantoms (head and body). GATE (GEANT4 Application for Tomographic Emission) platform is a Monte Carlo code for medical physics applications, especially dosimetry studies. CTDI and CTDI<sub>w</sub> were recorded to compare simulated results for different X-ray tube currents and voltages with experimental data at different positions in the phantom. The results obtained for all conditions applied show a difference less than 2.6% and 4.3% for head and body phantom, respectively. It was demonstrated that GATE is a good tool to simulate CTDI<sub>w</sub> values and to study of the influence of tube current and voltage on the absorbed dose.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100405"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100405","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44197476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100399
Jian-Xin Yang , Zhi-Bo He , Shi-Lun Guo
Two types of cascade nuclear track filters have been developed: (1) cascade filter made of polypropylene (PP) fiber membrane as preliminary filter and nuclear track membrane (NTM) as terminal filter; (2) Nylon tortuous-pore membrane as preliminary filter and NTM as terminal filter. Removal of solid particles by the cascade filters has been investigated. The solid particles studied include glass shards from broken ampoules and rubber fragments from rubber covers (plugs) of medical bottles. When an ampoule containing medicine is broken by emery wheel and by hands, large number of glass shards are produced and fall into the medicine. When a rubber cover is punctured by syringe needle, large number of rubber fragments are produced by friction between rubber and needle. The investigation shows that fiber or tortuous membranes alone usually cannot completely remove the microscopic particles due to existence of large gaps in the structure of the two common membranes. Nuclear track membranes alone and their cascade filters are superior to remove all solid particles bigger than the pore size of the track membrane. Removal efficiency for solid particles and flow rate of injections through the cascade filters have been calibrated and shown that both features above fulfill the requirements of Chinese regulations. The two types of cascade filters have been accepted for use in Chinese hospitals.
{"title":"Identification and harmfulness analysis of solid particles contained in medical injections and their removal by nuclear track membranes","authors":"Jian-Xin Yang , Zhi-Bo He , Shi-Lun Guo","doi":"10.1016/j.pisc.2019.100399","DOIUrl":"10.1016/j.pisc.2019.100399","url":null,"abstract":"<div><p>Two types of cascade nuclear track filters have been developed: (1) cascade filter made of polypropylene (PP) fiber membrane as preliminary filter and nuclear track membrane (NTM) as terminal filter; (2) Nylon tortuous-pore membrane as preliminary filter and NTM as terminal filter. Removal of solid particles by the cascade filters has been investigated. The solid particles studied include glass shards from broken ampoules and rubber fragments from rubber covers (plugs) of medical bottles. When an ampoule containing medicine is broken by emery wheel and by hands, large number of glass shards are produced and fall into the medicine. When a rubber cover is punctured by syringe needle, large number of rubber fragments are produced by friction between rubber and needle. The investigation shows that fiber or tortuous membranes alone usually cannot completely remove the microscopic particles due to existence of large gaps in the structure of the two common membranes. Nuclear track membranes alone and their cascade filters are superior to remove all solid particles bigger than the pore size of the track membrane. Removal efficiency for solid particles and flow rate of injections through the cascade filters have been calibrated and shown that both features above fulfill the requirements of Chinese regulations. The two types of cascade filters have been accepted for use in Chinese hospitals.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100399"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100399","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43734110","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100404
Rupamoy Bhattacharyya , S. Dey , Sanjay K. Ghosh , A. Maulik , Sibaji Raha , D. Syam
The relationship between different physical parameters of various polymers (e.g., CR-39, Lexan, and PET) used as Nuclear Track Detectors (NTDs) and their intrinsic detection thresholds were investigated. A strong correlation was found between the electrical resistivity and detection thresholds of the NTDs and from that an empirical relationship between the two established. The predicted value of the detection threshold for Perspex® obtained from that empirical formula is in good agreement with its experimentally determined value.
{"title":"Empirical relationship between detection thresholds and physical parameters of different Nuclear Track Detectors","authors":"Rupamoy Bhattacharyya , S. Dey , Sanjay K. Ghosh , A. Maulik , Sibaji Raha , D. Syam","doi":"10.1016/j.pisc.2019.100404","DOIUrl":"10.1016/j.pisc.2019.100404","url":null,"abstract":"<div><p>The relationship between different physical parameters of various polymers (e.g., CR-39, Lexan, and PET) used as Nuclear Track Detectors (NTDs) and their intrinsic detection thresholds were investigated. A strong correlation was found between the electrical resistivity and detection thresholds of the NTDs and from that an empirical relationship between the two established. The predicted value of the detection threshold for Perspex® obtained from that empirical formula is in good agreement with its experimentally determined value.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100404"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100404","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46743479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In this study, a portable radioactive plume monitor using a silicon photodiode was developed for the detection of a radioactive plume (e.g. 131I, 134Cs and 137Cs) in an emergency situation. It was found that the background count rate was proportional to ambient dose equivalent rate and the detection limit for the monitor at 20 μSv h−1 as an ambient dose equivalent rate was evaluated to be 187 Bq m−3 using the ISO11929 method. These results suggest that the detection limit for the system can be decreased effectively by lead shielding with optimized thickness.
{"title":"A portable radioactive plume monitor using a silicon photodiode","authors":"Yuki Tamakuma , Ryohei Yamada , Kazuki Iwaoka , Masahiro Hosoda , Tomohiro Kuroki , Hiroyuki Mizuno , Koji Yamada , Masahide Furukawa , Shinji Tokonami","doi":"10.1016/j.pisc.2019.100414","DOIUrl":"10.1016/j.pisc.2019.100414","url":null,"abstract":"<div><p>In this study, a portable radioactive plume monitor using a silicon photodiode was developed for the detection of a radioactive plume (e.g. <sup>131</sup>I, <sup>134</sup>Cs and <sup>137</sup>Cs) in an emergency situation. It was found that the background count rate was proportional to ambient dose equivalent rate and the detection limit for the monitor at 20<!--> <!-->μSv<!--> <!-->h<sup>−1</sup> as an ambient dose equivalent rate was evaluated to be 187<!--> <!-->Bq<!--> <!-->m<sup>−3</sup> using the ISO11929 method. These results suggest that the detection limit for the system can be decreased effectively by lead shielding with optimized thickness.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100414"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100414","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46723245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2019-09-01DOI: 10.1016/j.pisc.2019.100396
Redouane El Baydaoui , Mohammed Mikou , Mustapha Bougteb , Mohammed Reda Mesradi
In this work, we propose to analyze the dosimetric properties of the glucose Electron Paramagnetic Resonance (EPR) system. This study consists of irradiating samples of glucose by megavoltage X photons and electrons delivered by a particle accelerator used in radiotherapy. After irradiation, the samples were analyzed by EPR. The measurements obtained on samples placed at different depth in a phantom of PolyMethyl Methacrylate “PMMA” have firstly identified the depths corresponding to the maximum dose deposition for both particles and samples used. Analysis by EPR showed that the threshold measurable dose for this dosimetric system is about 2 Gy. The variation of curves obtained from the peak-to-peak EPR intensity, or the results of the double integration of the spectrum as a function of the irradiation dose, are linear with a correlation coefficient exceeding 0.999. Glucose seems slightly more sensitive to megavoltage X photons than megavoltage electrons. The results reveal interesting potential dosimetry of the glucose/EPR system in the field of radiation therapy.
{"title":"Analysis of dosimetric properties in the field of radiotherapy of glucose irradiated by megavoltage X photons, electrons and analyzed by EPR spectroscopy","authors":"Redouane El Baydaoui , Mohammed Mikou , Mustapha Bougteb , Mohammed Reda Mesradi","doi":"10.1016/j.pisc.2019.100396","DOIUrl":"10.1016/j.pisc.2019.100396","url":null,"abstract":"<div><p>In this work, we propose to analyze the dosimetric properties of the glucose Electron Paramagnetic Resonance (EPR) system. This study consists of irradiating samples of glucose by megavoltage X photons and electrons delivered by a particle accelerator used in radiotherapy. After irradiation, the samples were analyzed by EPR. The measurements obtained on samples placed at different depth in a phantom of PolyMethyl Methacrylate “PMMA” have firstly identified the depths corresponding to the maximum dose deposition for both particles and samples used. Analysis by EPR showed that the threshold measurable dose for this dosimetric system is about 2<!--> <!-->Gy. The variation of curves obtained from the peak-to-peak EPR intensity, or the results of the double integration of the spectrum as a function of the irradiation dose, are linear with a correlation coefficient exceeding 0.999. Glucose seems slightly more sensitive to megavoltage X photons than megavoltage electrons. The results reveal interesting potential dosimetry of the glucose/EPR system in the field of radiation therapy.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"12 ","pages":"Article 100396"},"PeriodicalIF":0.0,"publicationDate":"2019-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2019.100396","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44273456","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-01-01DOI: 10.1016/j.pisc.2015.10.004
Weston B. Struwe
{"title":"Epilogue—Unravelling Glycan Complexity","authors":"Weston B. Struwe","doi":"10.1016/j.pisc.2015.10.004","DOIUrl":"10.1016/j.pisc.2015.10.004","url":null,"abstract":"","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"11 ","pages":"Pages 70-71"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2015.10.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72792616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2017-01-01DOI: 10.1016/j.pisc.2016.02.003
Johannes F.G. Vliegenthart
For gaining insight in the mode of action at the molecular level of glycans in biological systems precise knowledge of the structure of the glycans is indispensable. To obtain this fundamental information well-defined starting material, optimal fractionation methods and adequate identification techniques are essential. In this review, the emphasis is on the application of high resolution 1H NMR spectroscopy to the structure determination of glycans of different origin. The power of 1H NMR spectroscopy is the possibility to determine in a non-destructive way all structural parameters of glycans. This is illustrated for glycans that differ in structural complexity.
{"title":"The impact of defining glycan structures","authors":"Johannes F.G. Vliegenthart","doi":"10.1016/j.pisc.2016.02.003","DOIUrl":"10.1016/j.pisc.2016.02.003","url":null,"abstract":"<div><p>For gaining insight in the mode of action at the molecular level of glycans in biological systems precise knowledge of the structure of the glycans is indispensable. To obtain this fundamental information well-defined starting material, optimal fractionation methods and adequate identification techniques are essential. In this review, the emphasis is on the application of high resolution <sup>1</sup>H NMR spectroscopy to the structure determination of glycans of different origin. The power of <sup>1</sup>H NMR spectroscopy is the possibility to determine in a non-destructive way all structural parameters of glycans. This is illustrated for glycans that differ in structural complexity.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"11 ","pages":"Pages 3-10"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2016.02.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"79591504","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The Integrated Life Science Database Project of Japan funded a group of glycoscientists to carry out a project to integrate glycoscience databases using Semantic Web technologies. As a continuation of the previous project period, the Japan Consortium for Glycobiology and Glycotechnology Database (JCGGDB) developed several glycoscience-related databases. The GlycoProtDB database is among those being integrated, providing an important resource to understand protein glycosylation. Another database being integrated is GlycoEpitope, a comprehensive database of carbohydrate epitopes and antibodies. In the current project period, we started the development of GlyTouCan, the international glycan structure repository providing unique accession numbers to all glycan structures. Although such databases are sufficiently important in and of themselves, their integration with other—omics data such as the protein information in UniProt will be crucial to bring glycosciences to the forefront of life sciences. However, to integrate such disparate sets of data among different fields in a way such that future maintenance costs are minimal, standardized ontologies and formats must be established. Our latest project has attempted to define the minimal standards that are necessary to enable this integration. The technical challenges to integrate all these databases and the technologies to overcome these challenges will be described.
{"title":"Latest developments in Semantic Web technologies applied to the glycosciences","authors":"Kiyoko F. Aoki-Kinoshita , Nobuyuki P. Aoki , Akihiro Fujita , Noriaki Fujita , Toshisuke Kawasaki , Masaaki Matsubara , Shujiro Okuda , Toshihide Shikanai , Daisuke Shinmachi , Elena Solovieva , Yoshinori Suzuki , Shinichiro Tsuchiya , Issaku Yamada , Hisashi Narimatsu","doi":"10.1016/j.pisc.2016.05.012","DOIUrl":"10.1016/j.pisc.2016.05.012","url":null,"abstract":"<div><p>The Integrated Life Science Database Project of Japan funded a group of glycoscientists to carry out a project to integrate glycoscience databases using Semantic Web technologies. As a continuation of the previous project period, the Japan Consortium for Glycobiology and Glycotechnology Database (JCGGDB) developed several glycoscience-related databases. The GlycoProtDB database is among those being integrated, providing an important resource to understand protein glycosylation. Another database being integrated is GlycoEpitope, a comprehensive database of carbohydrate epitopes and antibodies. In the current project period, we started the development of GlyTouCan, the international glycan structure repository providing unique accession numbers to all glycan structures. Although such databases are sufficiently important in and of themselves, their integration with other—omics data such as the protein information in UniProt will be crucial to bring glycosciences to the forefront of life sciences. However, to integrate such disparate sets of data among different fields in a way such that future maintenance costs are minimal, standardized ontologies and formats must be established. Our latest project has attempted to define the minimal standards that are necessary to enable this integration. The technical challenges to integrate all these databases and the technologies to overcome these challenges will be described.</p></div>","PeriodicalId":92112,"journal":{"name":"Perspectives in science","volume":"11 ","pages":"Pages 18-23"},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.pisc.2016.05.012","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"80111285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}