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LEUKEMIA STEM CELLS: STUDYING THE ROOT OF LEUKEMIA 白血病干细胞:研究白血病的根源
Pub Date : 2007-03-01 DOI: 10.1142/S1568558607000058
D. Pearce, D. Bonnet
A fundamental problem in cancer research is the identification of the cell type capable of initiating and sustaining the growth of the neoplastic clone in vivo. The key to solving this problem lies on the observation made over 40 years ago that tumors are heterogeneous and thus might be maintained only by a rare subset of cells called "cancer stem cells" (CSCs). However, the proof of this principle was only possible after the development of modern research tools for investigating the behavior of defined cell populations in vivo. The blood-related cancer leukemia was the first disease where human CSCs, or leukemic stem cells (LSCs), were isolated. The development of quantitative xenotransplantation assays using immune-deficient mouse recipients to detect primitive human hematopoietic stem cells (HSCs) with in vivo repopulating ability and the adaptation of this model to leukemia have been instrumental. Leukemia can now be viewed as aberrant hematopoietic processes initiated by rare LSCs that have maintained or reacquired the capacity for indefinite proliferation through accumulated mutations and/or epigenetic changes. Yet, despite their critical importance, much remains to be learned about the developmental origin of LSC and the mechanisms responsible for their emergence in the course of the disease. This report will review our current knowledge on normal and leukemic stem cell development and finally demonstrate how these discoveries provide a paradigm for identification of CSCs from solid tumors. By a careful comparative analysis of the properties of CSCs and of their normal counterparts, it should be possible to pinpoint critical features amenable to efficient anti-CSC therapies.
癌症研究的一个基本问题是鉴定能够在体内启动和维持肿瘤克隆生长的细胞类型。解决这一问题的关键在于40多年前的观察,即肿瘤是异质的,因此可能仅由称为“癌症干细胞”(CSCs)的罕见细胞子集维持。然而,这一原理的证明只有在现代研究工具的发展之后才有可能研究体内特定细胞群的行为。血液相关的癌症白血病是人类CSCs或白血病干细胞(LSCs)首次被分离出来的疾病。利用免疫缺陷小鼠受体进行定量异种移植试验,以检测具有体内再生能力的原始人类造血干细胞(hsc),以及该模型对白血病的适应性,这些都是有帮助的。白血病现在可以看作是由罕见的LSCs发起的异常造血过程,这些LSCs通过积累的突变和/或表观遗传变化维持或重新获得了无限增殖的能力。然而,尽管它们至关重要,但关于LSC的发育起源和它们在疾病过程中出现的机制仍有待了解。本报告将回顾我们目前对正常和白血病干细胞发育的了解,并最终证明这些发现如何为从实体瘤中鉴定csc提供了一个范例。通过对csc及其正常对应物的特性进行仔细的比较分析,应该有可能确定适用于有效的抗csc治疗的关键特征。
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引用次数: 0
CELL-FREE SELECTION OF DNA-BINDING PROTEINS FOR FUTURE GENE THERAPY APPLICATIONS ∗ 未来基因治疗应用的dna结合蛋白的无细胞选择*
Pub Date : 2007-03-01 DOI: 10.1142/S156855860700006X
A. Sepp, F. Ghadessy, Y. Choo
Engineered DNA-binding proteins, in particular zinc finger proteins (ZFPs), have broad-ranging applications in gene therapy. An engineered ZFP transcription activator targeted to the VEGF locus is currently undergoing clinical trials for the induction of angiogenesis. A number of ZFP gene switches have been developed which allow highly controllable regulation of therapeutic transgene expression based on small molecule inducers/repressors. Finally, engineered ZFP nucleases have been used to correct a gene sequence in a living cell by stimulating homologous DNA recombination, suggesting a new, highly targeted approach to gene therapy. All these approaches rely on DNA-binding protein engineering, which in the past has mainly been achieved by selection using phage display. However, a convenient cell-free selection method known as in vitro compartmentalization (IVC) has previously been used to engineer DNA-binding proteins with enzymatic activities (e.g. polymerase and methylase), and the method has recently been extended to the engineering of sequence-specific ZFP DNA-binders. Below we describe the IVC procedure and review the progress made in applying this to the problem of facilitating the engineering of DNA-binding proteins.
工程dna结合蛋白,特别是锌指蛋白在基因治疗中有着广泛的应用。一种针对VEGF位点的ZFP转录激活剂目前正在进行诱导血管生成的临床试验。许多ZFP基因开关已经被开发出来,它们允许基于小分子诱导剂/阻遏物的治疗性转基因表达的高度可控调控。最后,工程ZFP核酸酶已被用于通过刺激同源DNA重组来纠正活细胞中的基因序列,这表明了一种新的、高度靶向的基因治疗方法。所有这些方法都依赖于dna结合蛋白工程,这在过去主要是通过噬菌体展示的选择来实现的。然而,一种被称为体外区室化(IVC)的方便的无细胞选择方法已经被用于设计具有酶活性的dna结合蛋白(例如聚合酶和甲基化酶),并且该方法最近已扩展到序列特异性ZFP dna结合蛋白的工程。下面我们将介绍IVC程序,并回顾将其应用于促进dna结合蛋白工程问题的进展。
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引用次数: 2
Method — A nonviral gene transfer method for transfecting multipotent adult progenitor cells (MAPC) 方法-一种转染多能成体祖细胞(MAPC)的非病毒基因转移方法
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967481
U. Lakshmipathy, Luke Hammer, C. Verfaillie
Multipotent adult progenitor cells (MAPC) are stem cells isolated primarily from adult bone marrow that have the ability to differentiate in vitro into cells with phenotypic and functional characteristics of cells from the three germ layers, namely endoderm, mesoderm and neuroectoderm. In addition, MAPCs proliferate for extended periods of time without obvious senescence. Hence, MAPCs may be ideal cells for therapy of genetic disorders, provided that the main impediment to gene therapy, namely efficient gene transfer and persistent gene expression, can be overcome. Most commercially available lipid-based methods that very highly efficiently transfect cell lines and primary cells, fail to transfect MAPC. However, 10–15% transfection of MAPC can be achieved using Superfect. However, this approach requires high density culture of MAPCs which subsequently differentiate. Between 12 and 15% transfection is achieved in MAPCs using electroporation, but this is highly toxic to MAPCs. Here, using transient expression of an enhanced green fluorescent protein (EGFP) gene, we report that nucleofection results in a transfection efficiency of over 25% with mouse MAPC without perturbing the conditions suitable for MAPC growth and maintenance, and with significantly less toxicity than electroporation. Similar results were seen for rat and human MAPC. Efficient transfection of MAPC by nucleofection offers an appealing non-viral mode of gene delivery and can be used to overexpress genes of interest in these cells. In addition, it should easily accomodate emerging site-specific integration technology, thereby culminating eventually in MAPC-mediated long-term gene therapy for genetic disorders.
多能成体祖细胞(MAPC)是一种主要从成体骨髓中分离出来的干细胞,能够在体外分化为具有内胚层、中胚层和神经外胚层细胞表型和功能特征的细胞。此外,MAPCs在较长时间内增殖而没有明显的衰老。因此,MAPCs可能是治疗遗传性疾病的理想细胞,前提是能够克服基因治疗的主要障碍,即有效的基因转移和持续的基因表达。大多数商业上可用的基于脂质的方法非常有效地转染细胞系和原代细胞,但不能转染MAPC。然而,使用superect可以实现10-15%的MAPC转染。然而,这种方法需要高密度的MAPCs培养,MAPCs随后会分化。电穿孔法在MAPCs中实现了12%至15%的转染,但这对MAPCs具有高毒性。本研究中,通过瞬时表达一种增强的绿色荧光蛋白(EGFP)基因,我们报道了核转染导致小鼠MAPC的转染效率超过25%,而不干扰MAPC生长和维持的适宜条件,并且毒性明显低于电穿孔。在大鼠和人的MAPC中也看到了类似的结果。通过核转染有效转染MAPC提供了一种有吸引力的非病毒基因传递模式,可用于在这些细胞中过表达感兴趣的基因。此外,它应该很容易适应新兴的位点特异性整合技术,从而最终在mapc介导的遗传疾病的长期基因治疗中达到顶点。
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引用次数: 2
Small RNA-mediated chromatin modification and transcriptional gene silencing 小rna介导的染色质修饰和转录基因沉默
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967463
H. Kawasaki, Y. Fukuda, K. Taira
Small RNAs, such as short-interfering RNAs (siRNAs) and microRNAs (miRNAs), regulate gene expression in a sequence-dependent manner in animals and plants. These small RNAs are generated from long double-stranded (ds) RNAs or pre-miRNAs by the ribonuclease Dicer and become incorporated into RNA interference (RNAi)-induced silencing complexes (RISCs) or miRNA ribonucleoprotein complexes (miRNPs). These complexes have the ability to cleave target mRNAs with perfect base-pairing and inhibit the translation of target mRNAs with partial base-pairing. In addition, small RNAs can also act on the chromosomes in the nucleus. In this process, it is known that siRNAs targeted to CpG islands within promoters can induce RNA-directed DNA methylation and play a role in heterochromatic gene silencing. Thus, small RNAs can regulate gene expression at both the transcriptional and post-transcriptional levels. In this review, we focus on small RNA-mediated transcriptional gene silencing and on its role and potential therapeutic applications in chromosome maintenance and gene regulation, including epigenetic regulation.
小rna,如短干扰rna (sirna)和microRNAs (miRNAs),在动物和植物中以序列依赖的方式调节基因表达。这些小RNA由长双链RNA (ds)或前miRNA由核糖核酸酶Dicer产生,并被纳入RNA干扰(RNAi)诱导的沉默复合物(RISCs)或miRNA核糖核蛋白复合物(miRNPs)中。这些复合物具有切割具有完美碱基配对的靶mrna和抑制部分碱基配对的靶mrna翻译的能力。此外,小rna也可以作用于细胞核中的染色体。在这一过程中,已知启动子内靶向CpG岛的sirna可以诱导rna定向的DNA甲基化,并在异色基因沉默中发挥作用。因此,小rna可以在转录和转录后水平调控基因表达。在这篇综述中,我们主要关注小rna介导的转录基因沉默及其在染色体维持和基因调控(包括表观遗传调控)中的作用和潜在的治疗应用。
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引用次数: 1
Transmitochondrial stem cells: from mouse models of mtDNA diseases to autologous cybrid stem cell gene therapy 线粒体干细胞:从mtDNA疾病小鼠模型到自体杂交干细胞基因治疗
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967508
R. Bertolotti
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引用次数: 2
Antisense derivatives of U7 and other small nuclear RNAs as tools to modify pre-mRNA splicing patterns U7和其他小核rna的反义衍生物作为修饰前mrna剪接模式的工具
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967472
M. Asparuhova, R. Kole, D. Schümperli
The importance of alternative splicing for the diversity of the proteome and the large number of genetic diseases that are due to splicing defects call for methods to modulate alternative splicing decisions. Although splicing can be modulated by antisense oligonucleotides, this approach is confronted with problems of efficient delivery and the need for repeated administrations of large amounts of the oligonucleotides. Therefore we have developed methods allowing us to modulate splicing with the help of modified derivatives of the U7 small nuclear RNA involved in histone RNA 3′ end processing. Its nuclear accumulation as a stable ribonucleoprotein particle makes U7 snRNA especially useful for this purpose. In particular, U7 derivatives containing two tandem antisense sequences directed against targets upstream and downstream of an exon can induce the efficient and specific skipping of that exon. U7 expression cassettes have been successfully introduced into a great number of cell lines, primary cells or tissues with the help of lentiviral and adeno-associated viral vectors. Examples of these therapeutic strategies in the fields of β-thalassemia, Duchenne muscular dystrophy and HIV/AIDS are discussed.
选择性剪接对蛋白质组多样性的重要性以及由于剪接缺陷引起的大量遗传疾病要求对选择性剪接决策进行调节的方法。虽然剪接可以通过反义寡核苷酸调节,但这种方法面临着有效递送和需要大量寡核苷酸重复施用的问题。因此,我们开发了一种方法,允许我们在参与组蛋白RNA 3 '端加工的U7小核RNA的修饰衍生物的帮助下调节剪接。U7 snRNA作为一种稳定的核糖核蛋白颗粒,其核积累使得U7 snRNA在这方面特别有用。特别是,含有两个串联反义序列的U7衍生物针对外显子的上游和下游目标,可以诱导该外显子的有效和特异性跳过。在慢病毒和腺相关病毒载体的帮助下,已经成功地将U7表达盒引入大量细胞系、原代细胞或组织中。这些治疗策略在β-地中海贫血,杜氏肌萎缩症和艾滋病毒/艾滋病领域的例子进行了讨论。
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引用次数: 11
Xenomitochondrial embryonic stem cells and mice: modeling human mitochondrial biology and disease 异种线粒体胚胎干细胞和小鼠:模拟人类线粒体生物学和疾病
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967454
M. Cannon, C. Pinkert, I. Trounce
The characterization of mitochondrial diseases has proceeded rapidly since the first descriptions of mitochondrial DNA (mtDNA)-linked disease mutations appeared in the late 1980s. To elucidate mechanisms of a variety of mitochondrial disorders and disease, both in vitro and in vivo modeling systems have been exploited. To produce these models, numerous approaches have been undertaken due to the difficulty associated with targeted mutagenesis and directed modification of the mitochondrial genome. Currently available models of mitochondrial disease are discussed in this paper, including our xenomitochondrial mice. In this model, mitochondria from one donor species are transferred to another. By doing so, cells and animals were generated with varying levels of heteroplasmy (or homoplasmy) for the introduced mitochondrial genomes. This caused graded variations in electron transport chain (ETC) dysfunction which were dependent upon the evolutionary divergence between donor and recipient. The protocol in generating these models involved the utilization of rhodamine-6G (R6G) to remove or eliminate endogenous mtDNA from the recipient cells. This paper will highlight the process and the implications of R6G treatment of mouse embryonic stem (ES) cells to create transmitochondrial cybrids. We summarize the history and mechanism of action of R6G as well as the future prospects for xenomitochondrial models toward increasing our understanding of mitochondrial biology and the dynamic interplay in signaling between mitochondria and the nucleus.
自20世纪80年代末首次对线粒体DNA (mtDNA)相关疾病突变的描述出现以来,线粒体疾病的表征进展迅速。为了阐明各种线粒体紊乱和疾病的机制,体外和体内建模系统已经被利用。为了产生这些模型,由于与靶向诱变和线粒体基因组定向修饰相关的困难,已经采取了许多方法。本文讨论了目前可用的线粒体疾病模型,包括我们的异线粒体小鼠。在这个模型中,来自一个供体物种的线粒体被转移到另一个供体物种。通过这样做,细胞和动物产生了不同水平的异质性(或同质性)为引入的线粒体基因组。这导致电子传递链(ETC)功能障碍的梯度变化,这取决于供体和受体之间的进化差异。生成这些模型的方法包括利用罗丹明- 6g (R6G)去除或消除受体细胞中的内源性mtDNA。本文将重点介绍R6G处理小鼠胚胎干细胞(ES)以产生线粒体细胞系的过程和意义。我们总结了R6G的历史和作用机制,并展望了异种线粒体模型的发展前景,以增加我们对线粒体生物学和线粒体与细胞核之间信号传导的动态相互作用的理解。
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引用次数: 7
Digital RNA regulation of complex organisms 复杂生物体的数字RNA调控
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967517
J. Mattick
Proteins and their products are the analog components of cells. However the number of protein-coding genes in humans is not markedly different from that of a simple nematode worm, despite the vast differences in their developmental complexity. On the other hand, most of the human genome is transcribed, mainly into non-protein-coding RNAs. Both logic and emerging evidence suggest that these RNAs are not junk, but form an extensive regulatory network that was a necessary adaptation to solve the vastly expanded regulatory requirements of complex organisms, and that these RNAs now comprise a hidden layer of feed-forward control signals that direct the epigenetic trajectories of differentiation and development.
蛋白质及其产物是细胞的类似成分。然而,人类的蛋白质编码基因的数量与简单的线虫没有明显的不同,尽管它们的发育复杂性有很大的不同。另一方面,人类基因组的大部分都是转录的,主要是转录成非蛋白质编码rna。逻辑和新出现的证据都表明,这些rna不是垃圾,而是形成了一个广泛的调节网络,这是解决复杂生物体巨大扩展的调节需求的必要适应,这些rna现在包含了一个隐藏的前馈控制信号层,指导分化和发育的表观遗传轨迹。
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引用次数: 0
Safe delivery of therapeutic genes into specific chromosomal sites using engineered retroviral integrase 使用工程逆转录病毒整合酶将治疗性基因安全递送到特定的染色体位点
Pub Date : 2004-12-01 DOI: 10.1163/1568558043967490
T. A. Wilkinson, W. Tan, S. A. Chow
Gene therapy approaches that involve the permanent insertion of therapeutic genes into host chromosomal DNA have many desirable features and show considerable promise for success in the clinic. One major drawback of these approaches is that any unintended insertion events from the therapy can potentially have detrimental effects in patients, as demonstrated by the development of malignancies in both animal and human studies. Therefore, directing the integration of foreign genes into "safe sites" within the genome is highly desirable for these approaches. In retroviral-based vector systems, the viral enzyme integrase (IN) catalyzes the insertion of a desired transgene nonspecifically into the host cell genome. Efforts to engineer IN to recognize specific target DNA sequences within the genome, and thereby improve the safety of future generations of retroviral-based vectors, are described. Recent results using fusion protein constructs of IN and E2C, a designed polydactyl zinc-finger protein that specifically recognizes an 18-base pair DNA sequence, are highlighted in this review. Encouraging results have been generated in vitro, and additional studies are ongoing in mammalian cell systems. The long-term goal of these efforts is the development of effective retroviral vectors that can safely deliver therapeutics in a gene therapy setting.
将治疗基因永久插入宿主染色体DNA的基因治疗方法具有许多令人满意的特点,并在临床中显示出相当大的成功希望。这些方法的一个主要缺点是,正如动物和人类研究中恶性肿瘤的发展所证明的那样,治疗中的任何意外插入事件都可能对患者产生有害影响。因此,将外源基因整合到基因组内的“安全位点”是这些方法非常需要的。在基于逆转录病毒的载体系统中,病毒酶整合酶(In)催化将所需的转基因非特异性地插入宿主细胞基因组中。本文描述了如何利用基因工程技术来识别基因组内的特定靶DNA序列,从而提高未来几代逆转录病毒载体的安全性。本文重点介绍了最近使用IN和E2C融合蛋白构建的研究结果,E2C是一种设计的多趾锌指蛋白,可以特异性识别18个碱基对的DNA序列。在体外已经产生了令人鼓舞的结果,并且在哺乳动物细胞系统中正在进行更多的研究。这些努力的长期目标是开发有效的逆转录病毒载体,以便在基因治疗环境中安全地提供治疗。
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引用次数: 0
Editorial — Zinc finger nuclease-boosted gene targeting: toward clinical gene repair/alteration and custom site-specific integrative gene therapy 编辑-锌指核酸酶促进基因靶向:临床基因修复/改变和定制位点特异性综合基因治疗
Pub Date : 2004-08-01 DOI: 10.1163/1568558042457497
R. Bertolotti
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引用次数: 2
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Gene therapy and regulation
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