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Engineered Cys 2 His 2 zinc finger DNA-binding domains 设计cys2 His 2锌指dna结合域
Pub Date : 2004-08-01 DOI: 10.1163/1568558042457479
A. S. Hirsh, J. Joung
Gene therapy reagents such as artificial transcription factors and site-specific endonucleases require "made-to-order" DNA-binding domains with high affinity and specificity for novel target sequences. Cys2His2 zinc finger proteins are the best understood and most commonly used framework for design and selection of such domains. Though a number of design strategies have been described in the literature, they vary significantly in their reliability and ease of execution. This situation has made it difficult for the non-specialist researcher to know how best to construct zinc finger proteins for their application of interest. This article reviews the current state of the technology and its limitations, and discusses prospects for improving our ability to make customized DNA-binding modules.
基因治疗试剂,如人工转录因子和位点特异性内切酶,需要“按顺序制造”的dna结合域,对新的靶序列具有高亲和力和特异性。Cys2His2锌指蛋白是设计和选择这类结构域的最容易理解和最常用的框架。虽然文献中描述了许多设计策略,但它们在可靠性和执行的便利性方面差异很大。这种情况使得非专业研究人员很难知道如何最好地构建锌指蛋白以用于他们感兴趣的应用。本文综述了该技术的现状及其局限性,并讨论了提高我们定制dna结合模块能力的前景。
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引用次数: 3
Method — Intra-bone marrow transplantation of hematopoietic stem cells in non-human primates: long-term engraftment without conditioning 方法-非人灵长类动物造血干细胞骨髓内移植:无条件长期植入
Pub Date : 2004-08-01 DOI: 10.1163/1568558042457460
Kyoji Ueda, Y. Hanazono, N. Ageyama, H. Shibata, Satoko Ogata, Y. Ueda, T. Tabata, S. Ikehara, M. Taniwaki, M. Hasegawa, K. Terao, K. Ozawa
It has recently been reported that bone marrow cells can efficiently engraft without marrow conditioning when implanted directly into the bone marrow cavity (intra-bone marrow transplantation, iBMT) in mice. We have successfully examined the efficacy of autologous iBMT in a cynomolgus monkey model in conjuction with an in vivo expansion of transplanted cells by a selective amplifier transgene (Ueda et al., 2004) and provide here the detailed parameters of our iBMT method. We injected retrovirally-marked autologous CD34+ cells directly into the non-conditioned marrow cavity of the femur and humerus after gently irrigating the cavity with saline. This transplant procedure was safely performed without pulmonary embolism. Gene-marked cells were not detectable in the peripheral blood at one hour and one day after iBMT as assessed by sensitive PCR, indicating that iBMT hardly generated a systemic delivery of transplanted cells. On the other hand, 2 to 30% of clonogenic hematopoietic colonies produced from the implanted marrow were gene-marked at 6–12 months after iBMT. Our iBMT method for non-human primates is thus discussed in terms of long-lived hematopoietic stem/progenitor cells, bone marrow niche and long-term engraftment after iBMT without myeloablative conditioning.
最近有报道称,将骨髓细胞直接植入小鼠骨髓腔(intra-bone marrow transplantation, iBMT),无需骨髓调节即可有效植入。我们已经成功地在食蟹猴模型中检测了自体iBMT的有效性,并通过转基因选择放大器在体内扩增移植细胞(Ueda et al., 2004),并在这里提供了我们的iBMT方法的详细参数。我们将逆转录病毒标记的自体CD34+细胞直接注射到股骨和肱骨的非条件骨髓腔内,然后用盐水轻轻冲洗腔内。移植手术是安全的,没有肺栓塞。通过敏感PCR评估,在iBMT后1小时和1天的外周血中未检测到基因标记的细胞,表明iBMT几乎没有产生移植细胞的全身递送。另一方面,移植骨髓产生的2 - 30%的克隆造血菌落在iBMT后6-12个月被标记为基因。因此,我们对非人灵长类动物的iBMT方法进行了讨论,包括长期存活的造血干细胞/祖细胞、骨髓生态位和iBMT后无清髓条件的长期植入。
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引用次数: 1
Cancer gene therapy — current status in the clinics 癌症基因治疗的临床现状
Pub Date : 2004-08-01 DOI: 10.1163/1568558042457488
K. Pulkkanen, H. Sallinen, K. Tyynelä, S. Ylä-Herttuala
By now, we have seen the dawn of the clinical era of cancer gene therapy. An enormous amount of biological knowledge and experimental data were gathered during a short period of pre-clinical years, and numerous applications proceeded into human trials. The first clinical years have taught us hard lessons, and often forced us to pull back and choose new and alternative courses. However, they have also given sufficient promise that cancer gene therapy will establish its foothold in clinical cancer management in the future. More importantly, pioneering trials have helped us to put things into the right perspective; clinical advance will likely emerge from the combined use of gene therapy with traditional therapies. It also appears that no cancer gene therapy approach can be applied universally, but rather we will see treatments that show effectiveness in only a particular type of tumor. For the last but not the least — while researchers are likely to increase their efforts to find more efficient solutions — scientific rigor and study design should not be jeopardised by potential pressures from investors and drug companies. In this review, we summarize highlights in i) the current approaches and genetic treatment modalities that are available based on pre-clinical studies, and ii) the status of cancer gene therapy in current clinical oncology, with special reference to those cancers where gene therapy has proceeded to human trials.
到目前为止,我们已经看到了癌症基因治疗临床时代的曙光。在临床前几年的短时间内收集了大量的生物学知识和实验数据,并进行了大量的人体试验。最初的临床岁月教会了我们艰难的教训,常常迫使我们退缩,选择新的和替代的课程。然而,他们也给出了足够的希望,癌症基因治疗将在未来的临床癌症管理中站稳脚跟。更重要的是,开创性的试验帮助我们从正确的角度看待事物;基因疗法与传统疗法的结合使用可能会带来临床进步。似乎没有一种癌症基因治疗方法可以普遍应用,相反,我们将看到只对特定类型的肿瘤有效的治疗方法。最后但并非最不重要的一点是——尽管科学家可能会加大努力寻找更有效的解决方案——科学的严密性和研究设计不应该受到来自投资者和制药公司的潜在压力的损害。在这篇综述中,我们总结了i)目前基于临床前研究的方法和基因治疗模式,ii)癌症基因治疗在当前临床肿瘤学中的地位,特别提到了那些基因治疗已经进入人体试验的癌症。
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引用次数: 3
Alternative capsid strategies for targeting recombinant AAV gene therapy 靶向重组AAV基因治疗的备选衣壳策略
Pub Date : 2003-08-01 DOI: 10.1163/156855803322664628
S. Loiler, T. Flotte
The advent of new serotypes of adeno-associated viruses (AAV) has expanded the tissue tropism and allowed clinically relevant numbers of cells to be transduced by rAAV vectors. The two most significant obstacles in the way of future gene therapies with AAV vectors are tissue/target cell specificity and sitel-specific integration. Other reviews contained in this issue will look at advances in site-specific integration. This review will focus on the latest developments in AAV vector tropism and tissue/ target cell specificity.
腺相关病毒(AAV)新血清型的出现扩大了组织趋向性,并允许临床相关数量的细胞被rAAV载体转导。未来用AAV载体进行基因治疗的两个最大障碍是组织/靶细胞特异性和位点特异性整合。本期的其他评论将着眼于特定站点集成方面的进展。本文将重点介绍AAV载体的向性和组织/靶细胞特异性的最新进展。
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引用次数: 1
Stem cell gene therapy: breakthrough culminating in combination of ex vivo protocols with transient topical gene therapy 干细胞基因治疗:突破最终结合体外协议与短暂的局部基因治疗
Pub Date : 2003-08-01 DOI: 10.1163/156855803322664592
R. Bertolotti
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引用次数: 2
The pros and cons of using the mechanism of AAV site-specific recombination in gene delivery 利用AAV位点特异性重组机制进行基因传递的利弊
Pub Date : 2003-08-01 DOI: 10.1163/156855803322664619
N. A. Allen, R. Samulski
The field of gene therapy is progressing with continuous improvements in vector development and regulated transgene expression. These contributions will eventually allow matching the best vector system for the specific disease indication. However one essential component of gene delivery that may be more retractile to this type of development and critical to all methods of delivery relates to the molecular fate of the therapeutic nucleic acids after successful in vivo delivery. The importance of this was illustrated in the clinic when leukemias were a result of insertional mutagenesis after attempting to achieve long-term gene expression via retroviral vectors. These results echo the fact that safer methods of achieving long-term gene expression are needed for successful gene therapy vectors. One mechanism to be considered to obtain the desired gene therapy results of safe long-term gene expression is that of the targeted integration. A number of recombination systems both eukaryotic and prokaryotic are being evaluated for this purpose. Included in this list is the targeted recombination of the Adeno-Associated Virus (AAV). AAV is a unique virus in that it can establish latency in human cells by targeting the recombination of its genome to a specific locus on chromosome 19. This review discusses the current understanding of the cis and trans requirements for AAV site-specific recombination and the mechanism involved. The risks of AAV-based site-specific recombination are also addressed as well as the current state of gene delivery vectors based on the site-specific integration of AAV.
随着载体开发和转基因表达调控的不断完善,基因治疗领域也在不断发展。这些贡献最终将允许针对特定疾病指征匹配最佳媒介系统。然而,基因传递的一个重要组成部分可能对这种类型的发育更为敏感,对所有传递方法都至关重要,这与治疗性核酸在体内传递成功后的分子命运有关。当白血病是通过逆转录病毒载体实现长期基因表达后插入突变的结果时,这一点的重要性在临床中得到了说明。这些结果表明,成功的基因治疗载体需要更安全的长期基因表达方法。要获得安全的长期基因表达所需的基因治疗结果,需要考虑的一个机制是靶向整合。许多真核生物和原核生物的重组系统正在为此目的进行评估。此列表中包括腺相关病毒(AAV)的靶向重组。AAV是一种独特的病毒,它可以通过将其基因组重组到19号染色体上的特定位点,在人类细胞中建立潜伏期。本文综述了目前对AAV位点特异性重组的顺式和反式要求及其机制的理解。本文还讨论了基于AAV的位点特异性重组的风险,以及基于AAV位点特异性整合的基因传递载体的现状。
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引用次数: 2
Phage φC31 integrase-mediated site-specific integration for gene therapy 噬菌体φC31整合酶介导的基因治疗位点特异性整合
Pub Date : 2003-08-01 DOI: 10.1163/156855803322664600
Eric C. Olivares, M. Calos
For most genetic disorders, long-term correction is necessary. Integration of a therapeutic gene into a patient's genome is an obvious route to achieving such permanent correction. Several technologies have been applied to the goal of achieving integration, including viruses and transposases. While these techniques are effective at some level, they each have drawbacks that can be improved upon. A novel integration system based on a phage integrase can address some of the previous limitations. The integrase from the Streptomyces bacteriophage C31 catalyzes site-specific, unidirectional integration into the genomes of higher eukaryotes. This integrase has the ability to recognize a limited number of native genomic sequences and integrate introduced plasmid DNA into them. These native sequences, termed pseudo att sites, resemble the wild-type phage attachment site enough to support integrase-mediated integration. Molecular evolution holds the promise of creating custom integrases that preferentially recombine at particular pseudo att sites. Furthermore, the system has no apparent size limit on carrying capacity. These features make the C31 integrase system extremely appealing for gene therapy applications. The system has been successfully employed in several model gene therapy studies to date. Here we review the development of this novel integration system and its current and potential applications to gene therapy.
对于大多数遗传性疾病,长期矫正是必要的。将治疗性基因整合到患者基因组中是实现这种永久性纠正的明显途径。为了实现整合的目标,已经应用了几种技术,包括病毒和转座。虽然这些技术在某种程度上是有效的,但它们都有可以改进的缺点。一种基于噬菌体整合酶的新型整合系统可以解决以前的一些限制。来自Streptomyces噬菌体C31的整合酶催化位点特异性,单向整合到高等真核生物的基因组中。这种整合酶能够识别有限数量的原生基因组序列,并将引入的质粒DNA整合到其中。这些天然序列被称为伪att位点,与野生型噬菌体附着位点相似,足以支持整合酶介导的整合。分子进化有希望创造定制的整合酶,优先在特定的伪att位点重组。此外,该系统对承载能力没有明显的尺寸限制。这些特点使得C31整合酶系统对基因治疗应用极具吸引力。迄今为止,该系统已成功地应用于几个模型基因治疗研究中。本文综述了这种新型整合系统的研究进展及其在基因治疗中的应用前景。
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引用次数: 6
Globin gene transfer: a paradigm for transgene regulation and vector safety 珠蛋白基因转移:转基因调控和载体安全的范例
Pub Date : 2003-08-01 DOI: 10.1163/156855803322664637
S. Rivella, L. Lisowski, M. Sadelain
The β-thalassemias and sickle cell disease are severe congenital anemias that are caused by the defective synthesis of the β chain of hemoglobin. Allogeneic hematopoietic stem cell (HSC) transplantation is curative, but this therapeutic option is not available to the majority of patients. The transfer of a regulated β-globin gene in autologous HCSs thus represents a highly attractive alternative treatment. This strategy, simple in principle, raises major challenges in terms of controlling transgene expression, which ideally should be erythroid-specific, differentiation stage-restricted, elevated, position-independent, and sustained over time. Using lentiviral vectors, we recently demonstrated that an optimized combination of proximal and distal transcriptional control elements permits lineage-specific and elevated expression of the β-globin gene, resulting in therapeutic hemoglobin production and correction of anemia in β-thalassemic mice. Several groups have now confirmed and extended these findings in various mouse models of severe hemoglobinopathies, thus generating enthusiasm for a genetic treatment based on globin gene transfer. Furthermore, globin vectors provide a paradigm for improving vector safety by restricting transgene expression to the differentiated progeny within a single lineage, thereby reducing the risk of activating oncogenes in hematopoietic progenitors. Here we review the principles underlying the genesis of regulated vectors for stem cell therapy.
β-地中海贫血和镰状细胞病是由血红蛋白β链合成缺陷引起的严重先天性贫血。同种异体造血干细胞(HSC)移植是可治愈的,但这种治疗选择并不适用于大多数患者。因此,在自体造血干细胞中转移受调节的β-珠蛋白基因是一种极具吸引力的替代治疗方法。这种策略原理简单,但在控制转基因表达方面提出了重大挑战,理想情况下,转基因表达应该是红细胞特异性的、分化阶段受限的、升高的、与位置无关的,并随时间持续。利用慢病毒载体,我们最近证明了近端和远端转录控制元件的优化组合允许谱系特异性和β-珠蛋白基因的表达升高,从而导致治疗性血红蛋白产生并纠正β-地中海贫血小鼠的贫血。现在,几个研究小组已经在各种严重血红蛋白病的小鼠模型中证实并扩展了这些发现,从而激发了人们对基于血红蛋白基因转移的基因治疗的热情。此外,珠蛋白载体通过将转基因表达限制在单一谱系内的分化后代中,从而降低造血祖细胞中致癌基因激活的风险,从而为提高载体安全性提供了一个范例。在这里,我们回顾了干细胞治疗的调控载体的基本原理。
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引用次数: 8
Positron-emission-tomography monitoring of anti-glioblastoma HSV-1-tk gene therapy 抗胶质母细胞瘤HSV-1-tk基因治疗的正电子发射断层扫描监测
Pub Date : 2003-03-01 DOI: 10.1163/156855803762295422
A. Jacobs, A. Winkeler, C. Dittmar, S. Vollmar, K. Wienhard, J. Voges, W. Heiss
A phase I/II clinical trial of gene therapy for recurrent glioblastoma has been initiated in which non-invasive monitoring of the critical steps is performed by a combination of standard clinical positron-emission tomography (PET) for metabolic identification/evaluation of malignant lesions with pioneering PET imaging of HSV-1- tk transgene expression. Localization, characterization and trial follow-up of target tumors rely on multitracer PET brain imaging probed with radiolabeled 2-[ 18 F]fluoro-2-deoxy-D-glucose (FDG), methyl-[ 11 C]-L-methionine (MET) and 3´-deoxy-3´-[ 18 F]fluoro-L-thymidine (FLT) while the location, magnitude and duration of therapeutic HSV-1- tk transgene expression is monitored with 2´-fluoro-2´-deoxy-1-β-D-arabinofuranosyl-5-[ 124 I]iod ([ 124 I]-FIAU). In addition, in order to improve the distribution of the vector within the tumor tissue, a stereotactically guided convection-enhanced delivery (CED) protocol was devised in which the transfection of the HSV-1- tk gene into brain tumor cells is mediated by a liposome-DNA complex. Preliminary findings on a first group of five patients demonstrated that FIAU-PET imaging of HSV-1- tk expression in patients with glioblastoma is feasible and that vector-mediated gene expression may predict the therapeutic effect of ganciclovir prodrug activation. In addition, they showed that integration of magnetic resonance (MR) and PET imaging data into a 3D stereotaxic coordinate system results in an efficient non-invasive spatio-temporal monitoring of a brain gene therapy trial. Such a non-invasive imaging provides the means to identify potential critical parameters and to implement dosing/ routing adjustments that will have a critical impact on the development of standardized gene therapy protocols.
一项复发性胶质母细胞瘤基因治疗的I/II期临床试验已经启动,其中通过结合标准的临床正电子发射断层扫描(PET)进行代谢鉴定/评估恶性病变,并采用开创性的HSV-1- tk转基因表达的PET成像,对关键步骤进行无创监测。靶向肿瘤的定位、表征和试验随访依赖于放射性标记的2-[18 F]氟-2-脱氧-d -葡萄糖(FDG)、甲基-[11 C]- l-蛋氨酸(MET)和3 ' -脱氧-3 ' -[18 F]氟- l-胸腺嘧啶(FLT)探测的多示踪PET脑成像,同时用2 ' -氟-2 ' -脱氧-1-β- d -arabinofuranosyl-5-[124 I]- fiau监测治疗性HSV-1- tk转基因表达的位置、大小和持续时间。此外,为了改善载体在肿瘤组织内的分布,设计了一种立体定向引导对流增强递送(CED)方案,其中脂质体- dna复合物介导HSV-1- tk基因转染脑肿瘤细胞。第一组5例患者的初步研究结果表明,FIAU-PET成像胶质母细胞瘤患者HSV-1- tk表达是可行的,载体介导的基因表达可以预测更昔洛韦前药激活的治疗效果。此外,他们还表明,将磁共振(MR)和PET成像数据整合到3D立体坐标系统中,可以对大脑基因治疗试验进行有效的非侵入性时空监测。这种非侵入性成像提供了识别潜在关键参数和实施剂量/路径调整的手段,这将对标准化基因治疗方案的发展产生关键影响。
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引用次数: 4
Non-viral methods of gene transfer to airway epithelium 气道上皮基因转移的非病毒方法
Pub Date : 2003-03-01 DOI: 10.1163/156855803762295440
P. Davis, A. Ziady
The airway epithelium has been an important target for gene therapy in the last decade. This route of administration is readily accessible and the airway is affected by a number of disorders for which gene therapy may be useful. Viral vectors were first used to transfer genes to the airway of cystic fibrosis patients a decade ago. However, in vivo results have been disappointing, with substantial inflammation and toxicity occurring at doses that do not produce significant gene transfer. More recently researchers have used plasmid DNA based technologies as an alternative. DNA alone can transfect cells in culture and in vivo, though it is inefficient. Complexing DNA with cationic molecules improves efficiency. Nonviral gene transfer with lipid-DNA complexes has showed promise in cell culture and animals, but is much less efficacious in humans, and inflammation occurs at doses below those required for therapeutic effect. Trans-nuclear membrane delivery appears to be the limiting factor of current liposome-DNA complex efficiency in vivo. DNA compacted with polycations has also been used with good success in animal models, with minimal toxicity and is currently being tested in human trials. In this review, we will discuss the advances and limitations of these nonviral vectors in gene delivery, particularly to airway epithelial cells.
近十年来,气道上皮一直是基因治疗的重要靶点。这种给药途径很容易获得,并且气道受到许多基因治疗可能有用的疾病的影响。十年前,病毒载体首次被用于将基因转移到囊性纤维化患者的气道中。然而,体内实验结果令人失望,在不产生显著基因转移的剂量下,会发生严重的炎症和毒性。最近,研究人员使用了基于质粒DNA的技术作为替代方案。单独的DNA可以在培养和体内转染细胞,尽管它是低效的。用阳离子分子络合DNA可以提高效率。脂质- dna复合物的非病毒基因转移在细胞培养和动物中显示出了希望,但对人类的效果要差得多,并且在低于治疗效果所需的剂量时发生炎症。跨核膜递送似乎是目前脂质体- dna复合物体内效率的限制因素。聚合聚合的DNA在动物模型中也取得了很好的成功,毒性很小,目前正在进行人体试验。在这篇综述中,我们将讨论这些非病毒载体在基因传递方面的进展和局限性,特别是气道上皮细胞。
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引用次数: 4
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Gene therapy and regulation
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