Background and purpose: The underlying transcriptomic signatures driving brain functional alterations in MS and neuromyelitis optica spectrum disorder (NMOSD) are still unclear.
Materials and methods: Regional fractional amplitude of low-frequency fluctuation (fALFF) values were obtained and compared among 209 patients with MS, 90 patients with antiaquaporin-4 antibody (AQP4)+ NMOSD, 49 with AQP4- NMOSD, and 228 healthy controls from a discovery cohort. We used partial least squares (PLS) regression to identify the gene transcriptomic signatures associated with disease-related fALFF alterations. The biologic process and cell type-specific signature of the identified PLS genes were explored by enrichment analysis. The correlation between PLS genes and clinical variables was explored. A prospective independent cohort was used to validate the brain fALFF alterations and the repeatability of identified genes.
Results: MS, AQP4+ NMOSD, and AQP4- NMOSD showed decreased fALFF in cognition-related regions and deep gray matter, while NMOSD (both AQP4+ and AQP4-) additionally demonstrated lower fALFF in the visual region. The overlapping PLS1- genes (indicating that the genes were overexpressed as regional fALFF decreased) were enriched in response to regulation of the immune response in all diseases, and the PLS1- genes were specifically enriched in the epigenetics profile in MS, membrane disruption and cell adhesion in AQP4+ NMOSD, and leukocyte activation in AQP4- NMOSD. For the cell type transcriptional signature, microglia and astrocytes accounted for the decreased fALFF. The fALFF-associated PLS1- genes directly correlated with Expanded Disability Status Scale of MS and disease duration across disorders.
Conclusions: We revealed the functional activity alterations and their underlying shared and specific gene transcriptional signatures in MS, AQP4+ NMOSD, and AQP4- NMOSD.
{"title":"Imaging Transcriptomics of Brain Functional Alterations in MS and Neuromyelitis Optica Spectrum Disorder.","authors":"Yuna Li, Jun Sun, Zhizheng Zhuo, Min Guo, Yunyun Duan, Xiaolu Xu, Decai Tian, Kuncheng Li, Fuqing Zhou, Haiqing Li, Ningnannan Zhang, Xuemei Han, Fudong Shi, Yongmei Li, Xinghu Zhang, Yaou Liu","doi":"10.3174/ajnr.A8480","DOIUrl":"10.3174/ajnr.A8480","url":null,"abstract":"<p><strong>Background and purpose: </strong>The underlying transcriptomic signatures driving brain functional alterations in MS and neuromyelitis optica spectrum disorder (NMOSD) are still unclear.</p><p><strong>Materials and methods: </strong>Regional fractional amplitude of low-frequency fluctuation (fALFF) values were obtained and compared among 209 patients with MS, 90 patients with antiaquaporin-4 antibody (AQP4)+ NMOSD, 49 with AQP4- NMOSD, and 228 healthy controls from a discovery cohort. We used partial least squares (PLS) regression to identify the gene transcriptomic signatures associated with disease-related fALFF alterations. The biologic process and cell type-specific signature of the identified PLS genes were explored by enrichment analysis. The correlation between PLS genes and clinical variables was explored. A prospective independent cohort was used to validate the brain fALFF alterations and the repeatability of identified genes.</p><p><strong>Results: </strong>MS, AQP4+ NMOSD, and AQP4- NMOSD showed decreased fALFF in cognition-related regions and deep gray matter, while NMOSD (both AQP4+ and AQP4-) additionally demonstrated lower fALFF in the visual region. The overlapping PLS1- genes (indicating that the genes were overexpressed as regional fALFF decreased) were enriched in response to regulation of the immune response in all diseases, and the PLS1- genes were specifically enriched in the epigenetics profile in MS, membrane disruption and cell adhesion in AQP4+ NMOSD, and leukocyte activation in AQP4- NMOSD. For the cell type transcriptional signature, microglia and astrocytes accounted for the decreased fALFF. The fALFF-associated PLS1- genes directly correlated with Expanded Disability Status Scale of MS and disease duration across disorders.</p><p><strong>Conclusions: </strong>We revealed the functional activity alterations and their underlying shared and specific gene transcriptional signatures in MS, AQP4+ NMOSD, and AQP4- NMOSD.</p>","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":" ","pages":"1901-1909"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630882/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142607652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Significance of cerebellar tonsillar position on MR.","authors":"","doi":"10.3174/ajnr.45-12.S64","DOIUrl":"10.3174/ajnr.45-12.S64","url":null,"abstract":"","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":"45 12","pages":"S64-S68"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630867/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Turning the Page at <i>AJNR</i>: Charting a Legacy of Excellence in the Digital Era.","authors":"","doi":"10.3174/ajnr.A8466","DOIUrl":"10.3174/ajnr.A8466","url":null,"abstract":"","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":"45 12","pages":"1827"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630879/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Posterior Reversible Encephalopathy Syndrome, Part 1: Fundamental Imaging and Clinical Features.","authors":"","doi":"10.3174/ajnr.45-12.S100","DOIUrl":"10.3174/ajnr.45-12.S100","url":null,"abstract":"","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":"45 12","pages":"S100-S106"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630871/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Erin E O'Connor, Rosangela Salerno-Goncalves, Nikita Rednam, Rory O'Brien, Peter Rock, Andrea R Levine, Thomas A Zeffiro
Background and purpose: Neuropsychiatric complications of SARS-CoV-2 infection, also known as neurologic postacute sequelae of SARS-CoV-2 infection (NeuroPASC), affect 10%-60% of infected individuals. There is growing evidence that NeuroPASC is a multi system immune dysregulation disease affecting the brain. The behavioral manifestations of NeuroPASC, such as impaired processing speed, executive function, memory retrieval, and sustained attention, suggest widespread WM involvement. Although previous work has documented WM damage following acute SARS-CoV-2 infection, its involvement in NeuroPASC is less clear. We hypothesized that macrostructural and microstructural WM differences in NeuroPASC participants would accompany cognitive and immune system differences.
Materials and methods: In a cross-sectional study, we screened a total of 159 potential participants and enrolled 72 participants, with 41 asymptomatic controls (NoCOVID) and 31 NeuroPASC participants matched for age, sex, and education. Exclusion criteria included neurologic disorders unrelated to SARS-CoV-2 infection. Assessments included clinical symptom questionnaires, psychometric tests, brain MRI measures, and peripheral cytokine levels. Statistical modeling included separate multivariable regression analyses of GM/WM/CSF volume, WM microstructure, cognitive, and cytokine concentration between-group differences.
Results: NeuroPASC participants had larger cerebral WM volume than NoCOVID controls (β = 0.229; 95% CI: 0.017-0.441; t = 2.16; P = .035). The most pronounced effects were in the prefrontal and anterior temporal WM. NeuroPASC participants also exhibited higher WM mean kurtosis, consistent with ongoing neuroinflammation. NeuroPASC participants had more self-reported symptoms, including headache, and lower performance on measures of attention, concentration, verbal learning, and processing speed. A multivariate profile analysis of the cytokine panel showed different group cytokine profiles (Wald-type-statistic = 44.6, P = .046), with interferon (IFN)-λ1 and IFN-λ2/3 levels higher in the NeuroPASC group.
Conclusions: NeuroPASC participants reported symptoms of lower concentration, higher fatigue, and impaired cognition compatible with WM syndrome. Psychometric testing confirmed these findings. NeuroPASC participants exhibited larger cerebral WM volume and higher WM mean kurtosis than NoCOVID controls. These findings suggest that immune dysregulation could influence WM properties to produce WM volume increases and consequent cognitive effects and headaches. Further work will be needed to establish mechanistic links among these variables.
{"title":"Macro- and Microstructural White Matter Differences in Neurologic Postacute Sequelae of SARS-CoV-2 Infection.","authors":"Erin E O'Connor, Rosangela Salerno-Goncalves, Nikita Rednam, Rory O'Brien, Peter Rock, Andrea R Levine, Thomas A Zeffiro","doi":"10.3174/ajnr.A8481","DOIUrl":"10.3174/ajnr.A8481","url":null,"abstract":"<p><strong>Background and purpose: </strong>Neuropsychiatric complications of SARS-CoV-2 infection, also known as neurologic postacute sequelae of SARS-CoV-2 infection (NeuroPASC), affect 10%-60% of infected individuals. There is growing evidence that NeuroPASC is a multi system immune dysregulation disease affecting the brain. The behavioral manifestations of NeuroPASC, such as impaired processing speed, executive function, memory retrieval, and sustained attention, suggest widespread WM involvement. Although previous work has documented WM damage following acute SARS-CoV-2 infection, its involvement in NeuroPASC is less clear. We hypothesized that macrostructural and microstructural WM differences in NeuroPASC participants would accompany cognitive and immune system differences.</p><p><strong>Materials and methods: </strong>In a cross-sectional study, we screened a total of 159 potential participants and enrolled 72 participants, with 41 asymptomatic controls (NoCOVID) and 31 NeuroPASC participants matched for age, sex, and education. Exclusion criteria included neurologic disorders unrelated to SARS-CoV-2 infection. Assessments included clinical symptom questionnaires, psychometric tests, brain MRI measures, and peripheral cytokine levels. Statistical modeling included separate multivariable regression analyses of GM/WM/CSF volume, WM microstructure, cognitive, and cytokine concentration between-group differences.</p><p><strong>Results: </strong>NeuroPASC participants had larger cerebral WM volume than NoCOVID controls (β = 0.229; 95% CI: 0.017-0.441; <i>t</i> = 2.16; <i>P</i> = .035). The most pronounced effects were in the prefrontal and anterior temporal WM. NeuroPASC participants also exhibited higher WM mean kurtosis, consistent with ongoing neuroinflammation. NeuroPASC participants had more self-reported symptoms, including headache, and lower performance on measures of attention, concentration, verbal learning, and processing speed. A multivariate profile analysis of the cytokine panel showed different group cytokine profiles (Wald-type-statistic = 44.6, <i>P</i> = .046), with interferon (IFN)-λ1 and IFN-λ2/3 levels higher in the NeuroPASC group.</p><p><strong>Conclusions: </strong>NeuroPASC participants reported symptoms of lower concentration, higher fatigue, and impaired cognition compatible with WM syndrome. Psychometric testing confirmed these findings. NeuroPASC participants exhibited larger cerebral WM volume and higher WM mean kurtosis than NoCOVID controls. These findings suggest that immune dysregulation could influence WM properties to produce WM volume increases and consequent cognitive effects and headaches. Further work will be needed to establish mechanistic links among these variables.</p>","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":" ","pages":"1910-1918"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630878/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142402225","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zeev Itsekson-Hayosh, Federico Carpani, Pascal J Mosimann, Ronit Agid, Eef J Hendriks, Ivan Radovanovic, Hugo Andrade Barazarte, Joanna D Schaafsma, Karel Terbrugge, Timo Krings, Mary Pat McAndrews, Patrick Nicholson
<p><strong>Background and purpose: </strong>Dural arteriovenous fistulas (DAVFs) exhibit varied clinical manifestations, and high-grade cases are associated with both a risk of hemorrhage and (in certain cases) dementia. Less known, however, is the association between DAVF and more subtle cognitive changes, which might not be clinically apparent without formal neurocognitive testing. This study prospectively assesses baseline cognitive changes in patients with unruptured DAVFs and looks at the effects of treatment on any such changes.</p><p><strong>Materials and methods: </strong>A longitudinal prospective study was conducted to formally evaluate the neurocognitive status of patients with unruptured DAVFs undergoing embolization. Pre- and posttreatment assessments included neurologic examinations and cognitive tests (Repeatable Battery for the Assessment of Neuropsychological Status and Trail-Making Test [TMT]).</p><p><strong>Results: </strong>A total of 23 patients were treated, with 78% demonstrating cortical venous reflux at baseline. At baseline, 50% of patients demonstrated cognitive impairment in at least 1 cognitive domain, and this was significantly associated with cortical venous reflux (<i>P</i> < .05). Following treatment, significant improvements were observed in several cognitive domains. The mean change in Immediate Memory was an increase of 10.5 points (95% CI, 6.2-14.8, <i>P</i> < .001). Visuospatial/Constructional abilities showed a mean increase of 3.8 points (95% CI, 1.1-6.5, <i>P</i> = .008), while Language improved by a mean of 4.2 points (95% CI, 0.9-7.5, <i>P</i> = .015). Attention scores increased by a mean of 6.1 points (95% CI, 2.7-9.5, <i>P</i> < .001). Delayed Memory demonstrated a mean improvement of 7.4 points (95% CI, 3.5-11.3, <i>P</i> < .001), and the Total Repeatable Battery for the Assessment of Neuropsychological Status Score increased by a mean of 8.6 points (95% CI, 5.0-12.2, <i>P</i> < .001). For the TMT, the mean change in TMT-A was a decrease of 9.2 seconds (95% CI, 5.6-12.8, <i>P</i> < .001), indicating faster completion times. TMT-B scores decreased by a mean of 12.7 seconds (95% CI, 8.4-17.0, <i>P</i> < .001). The TMT B-A difference decreased by a mean of 3.5 seconds (95% CI, 0.5-6.5, <i>P</i> = .023), and the TMT B/A ratio showed a mean decrease of 0.18 (95% CI, 0.10-0.26, <i>P</i> = .002). Overall, among the patients with baseline cognitive impairment, 70% showed significant cognitive improvement following endovascular treatment, particularly in memory domains.</p><p><strong>Conclusions: </strong>In our study, 50% of patients with DAVFs had cognitive impairment when assessed with formal neurocognitive testing, with a significant link to cortical venous reflux. This cognitive impairment improved in 70% of those patients following treatment. These findings expand our understanding of how DAVF affects the brain, highlighting cognitive impairment as a critical factor. Consequently, the treatment of DAVFs
{"title":"Dural Arteriovenous Fistulas: Baseline Cognitive Changes and Changes following Treatment: A Prospective Longitudinal Study.","authors":"Zeev Itsekson-Hayosh, Federico Carpani, Pascal J Mosimann, Ronit Agid, Eef J Hendriks, Ivan Radovanovic, Hugo Andrade Barazarte, Joanna D Schaafsma, Karel Terbrugge, Timo Krings, Mary Pat McAndrews, Patrick Nicholson","doi":"10.3174/ajnr.A8449","DOIUrl":"10.3174/ajnr.A8449","url":null,"abstract":"<p><strong>Background and purpose: </strong>Dural arteriovenous fistulas (DAVFs) exhibit varied clinical manifestations, and high-grade cases are associated with both a risk of hemorrhage and (in certain cases) dementia. Less known, however, is the association between DAVF and more subtle cognitive changes, which might not be clinically apparent without formal neurocognitive testing. This study prospectively assesses baseline cognitive changes in patients with unruptured DAVFs and looks at the effects of treatment on any such changes.</p><p><strong>Materials and methods: </strong>A longitudinal prospective study was conducted to formally evaluate the neurocognitive status of patients with unruptured DAVFs undergoing embolization. Pre- and posttreatment assessments included neurologic examinations and cognitive tests (Repeatable Battery for the Assessment of Neuropsychological Status and Trail-Making Test [TMT]).</p><p><strong>Results: </strong>A total of 23 patients were treated, with 78% demonstrating cortical venous reflux at baseline. At baseline, 50% of patients demonstrated cognitive impairment in at least 1 cognitive domain, and this was significantly associated with cortical venous reflux (<i>P</i> < .05). Following treatment, significant improvements were observed in several cognitive domains. The mean change in Immediate Memory was an increase of 10.5 points (95% CI, 6.2-14.8, <i>P</i> < .001). Visuospatial/Constructional abilities showed a mean increase of 3.8 points (95% CI, 1.1-6.5, <i>P</i> = .008), while Language improved by a mean of 4.2 points (95% CI, 0.9-7.5, <i>P</i> = .015). Attention scores increased by a mean of 6.1 points (95% CI, 2.7-9.5, <i>P</i> < .001). Delayed Memory demonstrated a mean improvement of 7.4 points (95% CI, 3.5-11.3, <i>P</i> < .001), and the Total Repeatable Battery for the Assessment of Neuropsychological Status Score increased by a mean of 8.6 points (95% CI, 5.0-12.2, <i>P</i> < .001). For the TMT, the mean change in TMT-A was a decrease of 9.2 seconds (95% CI, 5.6-12.8, <i>P</i> < .001), indicating faster completion times. TMT-B scores decreased by a mean of 12.7 seconds (95% CI, 8.4-17.0, <i>P</i> < .001). The TMT B-A difference decreased by a mean of 3.5 seconds (95% CI, 0.5-6.5, <i>P</i> = .023), and the TMT B/A ratio showed a mean decrease of 0.18 (95% CI, 0.10-0.26, <i>P</i> = .002). Overall, among the patients with baseline cognitive impairment, 70% showed significant cognitive improvement following endovascular treatment, particularly in memory domains.</p><p><strong>Conclusions: </strong>In our study, 50% of patients with DAVFs had cognitive impairment when assessed with formal neurocognitive testing, with a significant link to cortical venous reflux. This cognitive impairment improved in 70% of those patients following treatment. These findings expand our understanding of how DAVF affects the brain, highlighting cognitive impairment as a critical factor. Consequently, the treatment of DAVFs ","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":" ","pages":"1878-1884"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630883/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142607651","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Diffusion-weighted MR imaging of acute stroke: correlation with T2-weighted and magnetic susceptibility-enhanced MR imaging in cats.","authors":"","doi":"10.3174/ajnr.45-12.S8","DOIUrl":"10.3174/ajnr.45-12.S8","url":null,"abstract":"","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":"45 12","pages":"S8-S14"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630868/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803743","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Hosung Kim, Wi-Sun Ryu, Dawid Schellingerhout, Jonghyeok Park, Jinyong Chung, Sang-Wuk Jeong, Dong-Seok Gwak, Beom Joon Kim, Joon-Tae Kim, Keun-Sik Hong, Kyung Bok Lee, Tai Hwan Park, Jong-Moo Park, Kyusik Kang, Yong-Jin Cho, Byung-Chul Lee, Kyung-Ho Yu, Mi Sun Oh, Soo Joo Lee, Jae-Kwan Cha, Dae-Hyun Kim, Jun Lee, Man Seok Park, Hee-Joon Bae, Dong-Eog Kim
Background and purpose: To date, only a few small studies have attempted deep learning-based automatic segmentation of white matter hyperintensity (WMH) lesions in patients with cerebral infarction; this issue is complicated because stroke-related lesions can obscure WMH borders. We developed and validated deep learning algorithms to segment WMH lesions accurately in patients with cerebral infarction using multisite data sets involving 8421 patients with acute ischemic stroke.
Materials and methods: We included 8421 patients with stroke from 9 centers in Korea. 2D UNet and squeeze-and-excitation (SE)-UNet models were trained using 2408 FLAIR MRIs from 3 hospitals and validated using 6013 FLAIR MRIs from 6 hospitals. WMH segmentation performance was assessed by calculating the Dice similarity coefficient (DSC), the correlation coefficient, and the concordance correlation coefficient compared with a human-segmented criterion standard. In addition, we obtained an uncertainty index that represents overall ambiguity in the voxel classification for WMH segmentation in each patient based on the Kullback-Leibler divergence.
Results: In the training data set, the mean age was 67.4 (SD, 13.0) years, and 60.4% were men. The mean (95% CI) DSCs for UNet in internal testing and external validation were, respectively, 0.659 (0.649-0.669) and 0.710 (0.707-0.714), which were slightly lower than the reliability between humans (DSC = 0.744; 95% CI, 0.738-0.751; P = .031). Compared with the UNet, the SE-UNet demonstrated better performance, achieving a mean DSC of 0.675 (95% CI, 0.666-0.685; P < .001) in the internal testing and 0.722 (95% CI, 0.719-0.726; P < .001) in the external validation; moreover, it achieved high DSC values (ranging from 0.672 to 0.744) across multiple validation data sets. We observed a significant correlation between WMH volumes that were segmented automatically and manually for the UNet (r = 0.917, P < .001), and it was even stronger for the SE-UNet (r = 0.933, P < .001). The SE-UNet also attained a high concordance correlation coefficient (ranging from 0.841 to 0.956) in the external test data sets. In addition, the uncertainty indices in most patients (86%) in the external data sets were <0.35, with an average DSC of 0.744 in these patients.
Conclusions: We developed and validated deep learning algorithms to segment WMH in patients with acute cerebral infarction using the largest-ever MRI data sets. In addition, we showed that the uncertainty index can be used to identify cases in which automatic WMH segmentation is less accurate and requires human review.
{"title":"Automated Segmentation of MRI White Matter Hyperintensities in 8421 Patients with Acute Ischemic Stroke.","authors":"Hosung Kim, Wi-Sun Ryu, Dawid Schellingerhout, Jonghyeok Park, Jinyong Chung, Sang-Wuk Jeong, Dong-Seok Gwak, Beom Joon Kim, Joon-Tae Kim, Keun-Sik Hong, Kyung Bok Lee, Tai Hwan Park, Jong-Moo Park, Kyusik Kang, Yong-Jin Cho, Byung-Chul Lee, Kyung-Ho Yu, Mi Sun Oh, Soo Joo Lee, Jae-Kwan Cha, Dae-Hyun Kim, Jun Lee, Man Seok Park, Hee-Joon Bae, Dong-Eog Kim","doi":"10.3174/ajnr.A8418","DOIUrl":"10.3174/ajnr.A8418","url":null,"abstract":"<p><strong>Background and purpose: </strong>To date, only a few small studies have attempted deep learning-based automatic segmentation of white matter hyperintensity (WMH) lesions in patients with cerebral infarction; this issue is complicated because stroke-related lesions can obscure WMH borders. We developed and validated deep learning algorithms to segment WMH lesions accurately in patients with cerebral infarction using multisite data sets involving 8421 patients with acute ischemic stroke.</p><p><strong>Materials and methods: </strong>We included 8421 patients with stroke from 9 centers in Korea. 2D UNet and squeeze-and-excitation (SE)-UNet models were trained using 2408 FLAIR MRIs from 3 hospitals and validated using 6013 FLAIR MRIs from 6 hospitals. WMH segmentation performance was assessed by calculating the Dice similarity coefficient (DSC), the correlation coefficient, and the concordance correlation coefficient compared with a human-segmented criterion standard. In addition, we obtained an uncertainty index that represents overall ambiguity in the voxel classification for WMH segmentation in each patient based on the Kullback-Leibler divergence.</p><p><strong>Results: </strong>In the training data set, the mean age was 67.4 (SD, 13.0) years, and 60.4% were men. The mean (95% CI) DSCs for UNet in internal testing and external validation were, respectively, 0.659 (0.649-0.669) and 0.710 (0.707-0.714), which were slightly lower than the reliability between humans (DSC = 0.744; 95% CI, 0.738-0.751; <i>P</i> = .031). Compared with the UNet, the SE-UNet demonstrated better performance, achieving a mean DSC of 0.675 (95% CI, 0.666-0.685; <i>P</i> < .001) in the internal testing and 0.722 (95% CI, 0.719-0.726; <i>P</i> < .001) in the external validation; moreover, it achieved high DSC values (ranging from 0.672 to 0.744) across multiple validation data sets. We observed a significant correlation between WMH volumes that were segmented automatically and manually for the UNet (<i>r</i> = 0.917, <i>P</i> < .001), and it was even stronger for the SE-UNet (<i>r</i> = 0.933, <i>P</i> < .001). The SE-UNet also attained a high concordance correlation coefficient (ranging from 0.841 to 0.956) in the external test data sets. In addition, the uncertainty indices in most patients (86%) in the external data sets were <0.35, with an average DSC of 0.744 in these patients.</p><p><strong>Conclusions: </strong>We developed and validated deep learning algorithms to segment WMH in patients with acute cerebral infarction using the largest-ever MRI data sets. In addition, we showed that the uncertainty index can be used to identify cases in which automatic WMH segmentation is less accurate and requires human review.</p>","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":" ","pages":"1885-1894"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630893/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141629429","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"CNS Vasculitis in Autoimmune Disease: MR Imaging Findings and Correlation with Angiography.","authors":"","doi":"10.3174/ajnr.45-12.S76","DOIUrl":"10.3174/ajnr.45-12.S76","url":null,"abstract":"","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":"45 12","pages":"S76-S86"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630865/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142803735","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Dinesh Rao, John V Murray, Amit K Agarwal, Sukhwinder Johnny Sandhu, Pat A Rhyner
Photon-counting CT (PCT) allows for improved spatial and contrast resolution compared with traditional energy-integrating detector CT. PCT offers markedly improved visualization of previously described structures, as well as those that were previously beyond the resolution of imaging. Although the anatomic details of the external ear and middle ear structures have been described previously, the rich detail of these structures has not been comprehensively reviewed in the radiology literature. The microarchitecture of the middle ear ossicles and bony protuberances are particularly well visualized on PCT. This review updates the existing literature with a detailed anatomic review of the external ear and the middle ear on temporal bone CT.
{"title":"Comprehensive Review of External and Middle Ear Anatomy on Photon-Counting CT.","authors":"Dinesh Rao, John V Murray, Amit K Agarwal, Sukhwinder Johnny Sandhu, Pat A Rhyner","doi":"10.3174/ajnr.A8359","DOIUrl":"10.3174/ajnr.A8359","url":null,"abstract":"<p><p>Photon-counting CT (PCT) allows for improved spatial and contrast resolution compared with traditional energy-integrating detector CT. PCT offers markedly improved visualization of previously described structures, as well as those that were previously beyond the resolution of imaging. Although the anatomic details of the external ear and middle ear structures have been described previously, the rich detail of these structures has not been comprehensively reviewed in the radiology literature. The microarchitecture of the middle ear ossicles and bony protuberances are particularly well visualized on PCT. This review updates the existing literature with a detailed anatomic review of the external ear and the middle ear on temporal bone CT.</p>","PeriodicalId":93863,"journal":{"name":"AJNR. American journal of neuroradiology","volume":" ","pages":"1857-1864"},"PeriodicalIF":0.0,"publicationDate":"2024-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11630884/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141162474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}