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BRD2 protects the rat H9C2 cardiomyocytes from hypoxia‑reoxygenation injury by targeting Nrf2/HO‑1 signaling pathway. BRD2通过靶向Nrf2/HO‑1信号通路保护大鼠H9C2心肌细胞免受缺氧-复氧损伤。
Pub Date : 2023-10-04 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12241
Yingcun Liu, Yuqing Fu, Xin Xue, Gang Tang, Liangyi Si

Myocardial ischemia-reperfusion (I/R) injury is a common complication of acute myocardial infarction following percutaneous coronary intervention, but there are currently no effective pharmacological targets for adjuvant therapy due to a lack of knowledge of I/R injury mechanisms in cardiomyocytes. To evaluate the effects of hypoxia-reoxygenation on the plasma proteome of cardiomyocytes and prospective therapeutic targets, five sets of H9C2 cardiomyocytes from rats were cultured under various hypoxic circumstances. Using Cell Counting Kit-8 (CCK8) and lactose dehydrogenase (LDH) release assays, the cell viability and LDH release of H9C2 cells were analyzed. Proteome sequencing was then performed on cardiomyocytes to show the quantitative protein changes during the I/R injury process. After hypoxia/reoxygenation, bromodomain-containing protein 2 (BRD2) expression was evaluated. After administering the BRD2 inhibitor dBET1, the expression of nuclear factor erythroid 2-related factor 2/haem oxygenase-1 (Nrf2/HO-1) was identified. The results showed that in the group exposed to 4 h of hypoxia followed by 4 h of reoxygenation (H/R4), the cell survival rate was dramatically reduced, although the apoptotic rate and LDH were much higher than in the normal oxygen group. In addition, the expressions of 2,325 proteins differed considerably between these two groups, with 128 upregulated and 122 downregulated proteins being discovered in the H/R4 group. After 4 h of reoxygenation, the BRD2 expression was increased. Following the addition of dBET1 to suppress BRD2, the expression of Nrf2/HO-1 was reduced, but the rate of apoptosis increased. In conclusion, through the Nrf2/HO-1 signaling pathway, BRD2 protects cardiomyocytes from damage caused by hypoxia/reoxygenation. This may have implications for novel treatment targets to minimize I/R damage to the myocardium.

心肌缺血再灌注(I/R)损伤是经皮冠状动脉介入治疗后急性心肌梗死的常见并发症,但由于缺乏对心肌细胞I/R损伤机制的了解,目前尚无有效的辅助治疗药物靶点。为了评估缺氧-复氧对心肌细胞血浆蛋白质组的影响和潜在的治疗靶点,在不同缺氧条件下培养了5组大鼠H9C2心肌细胞。使用细胞计数试剂盒-8(CCK8)和乳糖脱氢酶(LDH)释放测定法,分析H9C2细胞的细胞活力和LDH释放。然后对心肌细胞进行蛋白质组测序,以显示I/R损伤过程中蛋白质的定量变化。缺氧/复氧后,评估含溴结构域蛋白2(BRD2)的表达。在给予BRD2抑制剂dBET1后,鉴定了核因子-红系2相关因子2/血红素加氧酶-1(Nrf2/HO-1)的表达。结果表明,在缺氧4小时后再复氧4小时(h/R4)的组中,细胞存活率显著降低,尽管凋亡率和LDH远高于正常氧组。此外,2325种蛋白质的表达在这两组之间有很大差异,在H/R4组中发现了128种上调蛋白质和122种下调蛋白质。在复氧4小时后,BRD2的表达增加。添加dBET1抑制BRD2后,Nrf2/HO-1的表达降低,但细胞凋亡率增加。总之,通过Nrf2/HO-1信号通路,BRD2保护心肌细胞免受缺氧/复氧引起的损伤。这可能对减少心肌I/R损伤的新治疗靶点具有启示意义。
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引用次数: 0
Function of GSK‑3 signaling in spinal cord injury (Review). GSK-3信号在脊髓损伤中的作用(综述)。
Pub Date : 2023-10-03 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12240
Xiong Dong, Hongxiang Hong, Zhiming Cui

Spinal cord injury (SCI) is a major social problem with a heavy burden on patient physiology and psychology. Glial scar formation and irreversible neuron loss are the two key points during SCI progression. During the acute phase of spinal cord injury, glial scars form, limiting the progression of inflammation. However, in the subacute or chronic phase, glial scarring inhibits axon regeneration. Following spinal cord injury, irreversible loss of neurons leads to further aggravation of spinal cord injury. Several therapies have been developed to improve either glial scar or neuron loss; however, few therapies reach the stage of clinical trials and there are no mainstream therapies for SCI. Exploring the key mechanism of SCI is crucial for finding further treatments. Glycogen synthase kinase-3 (GSK-3) is a widely expressed kinase with important physiological and pathophysiological functions in vivo. Dysfunction of the GSK-3 signaling pathway during SCI has been widely discussed for controlling neurite growth in vitro and in vivo, improving the proliferation and neuronal differentiation of endogenous neural stem cells and functional recovery from spinal cord injury. SCI can decrease the phosphorylated (p)/total (t)-GSK-3β ratio, which leads to an increase in apoptosis, whereas treatment with GSK-3 inhibitors can promote neurogenesis. In addition, several therapies for the treatment of SCI involve signaling pathways associated with GSK-3. Furthermore, signaling pathways associated with GSK-3 also participate in the pathological process of neuropathic pain that remains following SCI. The present review summarized the roles of GSK-3 signaling in SCI to aid in the understanding of GSK-3 signaling during the pathological processes of SCI and to provide evidence for the development of comprehensive treatments.

脊髓损伤是一个严重的社会问题,给患者的生理和心理带来了沉重的负担。胶质瘢痕的形成和不可逆的神经元损失是SCI进展的两个关键点。在脊髓损伤的急性期,神经胶质瘢痕形成,限制了炎症的发展。然而,在亚急性或慢性期,神经胶质瘢痕形成会抑制轴突再生。脊髓损伤后,神经元的不可逆损失会导致脊髓损伤的进一步加重。已经开发了几种治疗方法来改善神经胶质瘢痕或神经元损失;然而,很少有疗法达到临床试验阶段,也没有针对SCI的主流疗法。探索SCI的关键机制对于找到进一步的治疗方法至关重要。糖原合成酶激酶-3(GSK-3)是一种广泛表达的激酶,在体内具有重要的生理和病理生理功能。SCI期间GSK-3信号通路的功能障碍已被广泛讨论用于在体外和体内控制轴突生长、改善内源性神经干细胞的增殖和神经元分化以及从脊髓损伤中恢复功能。SCI可降低磷酸化(p)/总(t)-GSK-3β比率,从而导致细胞凋亡增加,而GSK-3抑制剂治疗可促进神经发生。此外,治疗SCI的几种疗法涉及与GSK-3相关的信号通路。此外,与GSK-3相关的信号通路也参与了SCI后仍存在的神经性疼痛的病理过程。本文综述了GSK-3信号在SCI中的作用,以帮助理解GSK-3在SCI病理过程中的信号传导,并为综合治疗的发展提供依据。
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引用次数: 0
Trehalose delays postmenopausal osteoporosis by enhancing AKT/TFEB pathway‑dependent autophagy flow in rats. 海藻糖通过增强大鼠AKT/TFEB通路依赖性自噬流来延缓绝经后骨质疏松症。
Pub Date : 2023-10-02 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12237
Yongli Wang, Xingcun Li, Hongliang Gao, Qian Lu

Osteoporosis is a systemic bone metabolic disorder that plagues the health and quality of life of the elderly. Autophagy plays an important role in bone formation while maintaining the homeostasis of the body. Trehalose is a mTOR-independent autophagy inducer, but to the best of our knowledge, there is no rat model of postmenopausal osteoporosis. The present study found that trehalose can delay postmenopausal osteoporosis in rats, which may be achieved by inducing and enhancing AKT/transcription factor EB pathway-dependent autophagy flow. The specific mechanism of its occurrence needs to be further studied. Trehalose-containing drugs are promising for delaying postmenopausal osteoporosis. Hematoxylin and eosin (H&E) staining, western blotting, micro computerized tomography (CT) scanning and Transmission electron microscopy were used to investigate the role of trehalose in postmenopausal osteoporosis rat model at protein, cell and histology aspects. According to the H&E staining results, the bone trabecular histological structure of the trehalose group was superior to that of the model group. The Micro CT scanning indicated the imaging structure of bone trabeculae in the trehalose group was superior to than that in the model group. Western blotting indicated the activation of autophagic flow in trehalose group, the autophagy degree of the trehalose group is greater than that of the model group; Transmission electron microscopy indicated the autophagy degree of the Trehalose group was greater than that of the model group under electron microscopy. Trehalose can delay postmenopausal osteoporosis in rats, which may be achieved by inducing and enhancing Akt/TFEB pathway-dependent autophagy flow.

骨质疏松症是一种系统性骨代谢紊乱,严重影响老年人的健康和生活质量。自噬在骨骼形成过程中起着重要作用,同时维持身体的稳态。海藻糖是一种mTOR独立的自噬诱导剂,但据我们所知,还没有绝经后骨质疏松症的大鼠模型。本研究发现海藻糖可以延缓大鼠绝经后骨质疏松症的发生,这可能是通过诱导和增强AKT/转录因子EB通路依赖性自噬流来实现的。其发生的具体机制有待进一步研究。含海藻糖的药物有望延缓绝经后骨质疏松症的发生。采用苏木精-伊红(H&E)染色、蛋白质印迹、计算机断层扫描(CT)和透射电镜等方法,从蛋白质、细胞和组织学等方面研究海藻糖在绝经后骨质疏松大鼠模型中的作用。根据H&E染色结果,海藻糖组的骨小梁组织学结构优于模型组。显微CT扫描显示海藻糖组骨小梁成像结构优于模型组。Western印迹显示海藻糖组的自噬流活化,海藻糖组的自噬程度大于模型组;透射电镜显示海藻糖组的自噬程度大于模型组。海藻糖可以延缓大鼠绝经后骨质疏松症,这可能通过诱导和增强Akt/TFEB通路依赖性自噬流来实现。
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引用次数: 0
[Retracted] Protective effects of baicalin on rabbit articular chondrocytes in vitro. 【收回】黄芩苷对体外培养的兔关节软骨细胞的保护作用。
Pub Date : 2023-10-02 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12236
Xianyuan Huang, Huayu Wu, Liqin Wang, Li Zheng, Jinmin Zhao

[This retracts the article DOI: 10.3892/etm.2017.4116.].

[这收回了文章DOI:10.3892/ettm.2017.4116.]。
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引用次数: 0
COL3A1, COL5A1 and COL6A2 serve as potential molecular biomarkers for osteoarthritis based on weighted gene co‑expression network analysis bioinformatics analysis. 基于加权基因共表达网络分析生物信息学分析,COL3A1、COL5A1和COL6A2可作为骨关节炎的潜在分子生物标志物。
Pub Date : 2023-10-02 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12239
Yufeng Zhang, Yingzhen Niu, Yonggang Peng, Xueyang Pan, Fei Wang

Osteoarthritis (OA) is a non-inflammatory degenerative joint disease, characterized by joint pain and stiffness. The prevalence of OA increases with age. However, the relationship between biomarkers [collagen type III α1 (COL3A1), COL5A1, COL6A2, COL12A1] and OA remains unclear. The OA subchondral bone dataset GSE51588 was downloaded from the GEO database, and the differentially expressed genes (DEGs) were screened. Weighted gene co-expression network analysis was performed, and a protein-protein interaction network was constructed and further analyzed using Cytoscape and STRING. Functional enrichment analysis was performed using Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis, and then Gene Set Enrichment Analysis (GSEA) was used to formulate the molecular functions and pathways based on the results of GO and KEGG analyses. Comparative Toxicogenomics Database and TargetScan were used to identify the hub-gene-related diseases and the microRNAs that regulated the central hub genes. Immunohistochemical staining was performed to confirm the expression of related proteins in OA and non-OA tissue samples. A total of 1,679 DEGs were identified. GO analysis showed that the DEGs were primarily enriched in the process of 'immune system', 'extracellular region', 'secretory granule', 'collagen-containing extracellular matrix', 'ECM-receptor, glycosaminoglycan binding' and 'systemic lupus erythematosus'. The results of GSEA were similar to those of GO and KEGG enrichment terms for DEGs. A total of 25 important modules were generated, and two core gene clusters and seven core genes were obtained (COL6A2, COL5A2, COL12A1, COL5A1, COL6A1, LUM and COL3A1). Core genes were expressed differentially between OA subchondral bone and normal tissue samples. The expression levels of COL3A1, COL5A1 and COL6A2 in OA subchondral bone tissue were higher compared with those in normal tissues, but COL12A1 expression was not significantly increased; all stained markers were highly expressed in surrounding tissues of immunohistochemical staining. In conclusion, COL3A1, COL5A1 and COL6A2 may be potential molecular biomarkers for OA.

骨关节炎(OA)是一种非炎症性退行性关节疾病,其特征是关节疼痛和僵硬。OA的患病率随着年龄的增长而增加。然而,生物标志物[III型胶原α1(COL3A1)、COL5A1、COL6A2、COL12A1]与OA之间的关系尚不清楚。OA软骨下骨数据集GSE51588从GEO数据库下载,并筛选差异表达基因(DEGs)。进行加权基因共表达网络分析,构建蛋白质-蛋白质相互作用网络,并使用Cytoscape和STRING进行进一步分析。使用基因本体论(GO)和京都基因和基因组百科全书(KEGG)分析进行功能富集分析,然后基于GO和KEGG分析的结果使用基因集富集分析(GSEA)来制定分子功能和途径。使用比较毒理学基因组学数据库和TargetScan来鉴定中枢基因相关疾病和调节中枢基因的微小RNA。免疫组织化学染色证实相关蛋白在OA和非OA组织样本中的表达。共鉴定出1679个DEG。GO分析显示,DEG主要富集在“免疫系统”、“细胞外区域”、“分泌颗粒”、“含有胶原的细胞外基质”、“ECM受体、糖胺聚糖结合”和“系统性红斑狼疮”的过程中。GSEA的结果与GO和KEGG的DEG富集项的结果相似。共产生25个重要模块,获得两个核心基因簇和7个核心基因(COL6A2、COL5A2、COL12A1、COL5A1、COL6A1、LUM和COL3A1)。核心基因在OA软骨下骨和正常组织样本之间有差异表达。COL3A1、COL5A1和COL6A2在OA软骨下骨组织中的表达水平高于正常组织,但COL12A1的表达没有显著增加;免疫组化染色显示,所有染色标记物均在周围组织中高表达。总之,COL3A1、COL5A1和COL6A2可能是OA的潜在分子生物标志物。
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引用次数: 0
Evaluation of the accuracy of heart dose prediction by machine learning for selecting patients not requiring deep inspiration breath‑hold radiotherapy after breast cancer surgery. 通过机器学习评估心脏剂量预测的准确性,以选择癌症手术后不需要深吸气屏息放疗的患者。
Pub Date : 2023-10-02 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12235
Ryo Kamizaki, Masahiro Kuroda, Wlla E Al-Hammad, Nouha Tekiki, Hinata Ishizaka, Kazuhiro Kuroda, Kohei Sugimoto, Masataka Oita, Yoshinori Tanabe, Majd Barham, Irfan Sugianto, Yuki Nakamitsu, Masaki Hirano, Yuki Muto, Hiroki Ihara, Soichi Sugiyama

Increased heart dose during postoperative radiotherapy (RT) for left-sided breast cancer (BC) can cause cardiac injury, which can decrease patient survival. The deep inspiration breath-hold technique (DIBH) is becoming increasingly common for reducing the mean heart dose (MHD) in patients with left-sided BC. However, treatment planning and DIBH for RT are laborious, time-consuming and costly for patients and RT staff. In addition, the proportion of patients with left BC with low MHD is considerably higher among Asian women, mainly due to their smaller breast volume compared with that in Western countries. The present study aimed to determine the optimal machine learning (ML) model for predicting the MHD after RT to pre-select patients with low MHD who will not require DIBH prior to RT planning. In total, 562 patients with BC who received postoperative RT were randomly divided into the trainval (n=449) and external (n=113) test datasets for ML using Python (version 3.8). Imbalanced data were corrected using synthetic minority oversampling with Gaussian noise. Specifically, right-left, tumor site, chest wall thickness, irradiation method, body mass index and separation were the six explanatory variables used for ML, with four supervised ML algorithms used. Using the optimal value of hyperparameter tuning with root mean squared error (RMSE) as an indicator for the internal test data, the model yielding the best F2 score evaluation was selected for final validation using the external test data. The predictive ability of MHD for true MHD after RT was the highest among all algorithms for the deep neural network, with a RMSE of 77.4, F2 score of 0.80 and area under the curve-receiver operating characteristic of 0.88, for a cut-off value of 300 cGy. The present study suggested that ML can be used to pre-select female Asian patients with low MHD who do not require DIBH for the postoperative RT of BC.

左侧癌症(BC)术后放疗(RT)期间心脏剂量增加会导致心脏损伤,从而降低患者生存率。深吸气屏气技术(DIBH)在降低左侧BC患者的平均心脏剂量(MHD)方面越来越普遍。然而,RT的治疗计划和DIBH对患者和RT工作人员来说是费力、耗时和昂贵的。此外,亚洲女性中左乳腺癌患者MHD低的比例要高得多,这主要是因为与西方国家相比,她们的乳房体积较小。本研究旨在确定预测RT后MHD的最佳机器学习(ML)模型,以预先选择在RT计划前不需要DIBH的低MHD患者。总共,562名接受术后RT的BC患者被随机分为训练(n=449)和外部(n=113)测试数据集,使用Python(3.8版)进行ML。使用高斯噪声的合成少数过采样校正不平衡数据。具体而言,左右、肿瘤部位、胸壁厚度、照射方法、体重指数和分离度是ML的六个解释变量,使用了四种监督ML算法。使用具有均方根误差(RMSE)的超参数调整的最佳值作为内部测试数据的指标,选择产生最佳F2分数评估的模型,使用外部测试数据进行最终验证。在深度神经网络的所有算法中,MHD对RT后真实MHD的预测能力最高,RMSE为77.4,F2得分为0.80,曲线下面积接收器操作特性为0.88,截止值为300 cGy。本研究表明,ML可用于预选MHD低的亚洲女性患者,这些患者不需要DIBH进行BC的术后RT。
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引用次数: 0
Ectopic gastric mucosa in the submucosa of the stomach: A case report. 胃黏膜下层异位的胃黏膜:一例报告。
Pub Date : 2023-10-02 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12238
Jian-Hua Xi, Nai-Ying Sun, Wen-Jun Guo, Xing-Jie Yang

Under normal circumstances, gastric mucosa only exists within the stomach. However, in certain situations, gastric mucosal tissue may undergo ectopia, commonly occurring in the esophagus and intestine, with rare occurrences within the stomach itself. A comprehensive literature review was performed to understand the distinct characteristics of ectopic gastric mucosa (EGM) in the stomach and investigate a rare incident of this disease, providing an in-depth analysis of the clinical, histopathologic, and differential diagnostic findings. The case was a 47-year-old man with acid reflux, heartburn, abdominal distension, and diarrhea (5-10 times daily) for >10 years. A gastroscope indicated a submucosal protuberance lesion in the gastric body that felt hard with biopsy forceps. A well-defined nodule under the mucosal muscle was revealed microscopically, composed of epithelial elements and no atypia. Immunohistochemical staining demonstrated similar EGM expression patterns compared with normal gastric mucosa. The present case report highlights the importance of accurate EGM diagnosis and understanding.

在正常情况下,胃黏膜只存在于胃内。然而,在某些情况下,胃粘膜组织可能会发生异位,通常发生在食道和肠道,很少发生在胃内。进行了全面的文献综述,以了解胃异位胃粘膜(EGM)的独特特征,并调查这种疾病的罕见事件,对临床、组织病理学和鉴别诊断结果进行深入分析。病例是一名47岁的男性,有胃酸倒流、胃灼热、腹胀和腹泻(每天5-10次),持续时间>10年。胃镜显示胃体黏膜下突起病变,活检钳感觉很硬。显微镜下可见粘膜肌下清晰可见的结节,由上皮细胞组成,无异型性。免疫组织化学染色显示,与正常胃黏膜相比,EGM的表达模式相似。本病例报告强调了准确诊断和理解电描记图的重要性。
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引用次数: 0
Unraveling the protective mechanisms of Chuanfangyihao against acute lung injury: Insights from experimental validation. 川方益好对急性肺损伤保护作用机制的实验验证。
Pub Date : 2023-09-28 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12234
Hongfang Fu, Xiao Liang, Wanying Tan, Xiaoyu Hu

Chuanfangyihao (CFYH) is an effective treatment for acute lung injury (ALI) in clinical practice; however, its underlying mechanism of action remains unclear. Therefore, the aim of the present study was to elucidate the pharmacological mechanism of action of CFYH in ALI through experimental validation. First, a rat model of ALI was established using lipopolysaccharide (LPS). Next, the pathological changes in the lungs of the rats and the pathological damage were scored. The wet/dry weight ratios were measured, and ROS content was detected using flow cytometry. ELISA was used to examine IL-6, TNF-α, IL-1β, IL-18, and LDH levels. Immunohistochemistry was used to detect Beclin-1 and NLRP3 expression. Western blotting was performed to analyze the expression of HMGB1, RAGE, TLR4, NF-κB p65, AMPK, p-AMPK, mTOR, p-mTOR, Beclin-1, LC3-II/I, p62, Bcl-2, Bax, Caspase-3, Caspase-1, and GSDMD-NT. The mRNA levels of HMGB1, RAGE, AMPK, mTOR, and HIF-1α were determined using reverse transcription quantitative PCR. CFYH alleviated pulmonary edema and decreased the expression of IL-6, TNF-α, TLR4, NF-κB p65, HMGB1/RAGE, ROS, and HIF-1α. In addition, pretreatment with CFYH reversed ALI-induced programmed cell death. In conclusion, CFYH alleviates LPS-induced ALI, and these findings provide a preliminary clarification of the predominant mechanism of action of CFYH in ALI.

川方一号在临床上是治疗急性肺损伤的有效药物;然而,其潜在的作用机制仍不清楚。因此,本研究的目的是通过实验验证CFYH对ALI的药理作用机制。首先,用脂多糖(LPS)建立大鼠ALI模型。接下来,对大鼠肺部的病理变化和病理损伤进行评分。测量湿重/干重比,并使用流式细胞术检测ROS含量。ELISA法检测IL-6、TNF-α、IL-1β、IL-18和LDH水平。免疫组化检测Beclin-1和NLRP3的表达。进行蛋白质印迹以分析HMGB1、RAGE、TLR4、NF-κB p65、AMPK、p-AMPK、mTOR、p-mTOR、Beclin-1、LC3-II/I、p62、Bcl-2、Bax、Caspase-3、Caspase-1和GSDMD-NT的表达。使用逆转录定量PCR测定HMGB1、RAGE、AMPK、mTOR和HIF-1α的mRNA水平。CFYH减轻肺水肿,降低IL-6、TNF-α、TLR4、NF-κB p65、HMGB1/RAGE、ROS和HIF-1α的表达。此外,CFYH预处理逆转了ALI诱导的程序性细胞死亡。总之,CFYH减轻LPS诱导的ALI,这些发现为CFYH在ALI中的主要作用机制提供了初步的阐明。
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引用次数: 0
Transcriptomics and metabolomics study in mouse kidney of the molecular mechanism underlying energy metabolism response to hypoxic stress in highland areas. 转录组学和代谢组学研究高原地区低氧应激下能量代谢反应的分子机制。
Pub Date : 2023-09-28 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12232
Yujie Gao, Qifu Long, Hui Yang, Ying Hu, Yuzhen Xu, Chaoqun Tang, Cunlin Gu, Sheng Yong

Exposure to hypoxia disrupts energy metabolism and induces inflammation. However, the pathways and mechanisms underlying energy metabolism disorders caused by hypoxic conditions remain unclear. In the present study, a hypoxic animal model was created and transcriptomic and non-targeted metabolomics techniques were applied to further investigate the pathways and mechanisms of hypoxia exposure that disrupt energy metabolism. Transcriptome results showed that 3,007 genes were significantly differentially expressed under hypoxic exposure, and Gene Ontology annotation analysis and Kyoto Encyclopaedia of Genes and Genomes (KEGG) enrichment analysis showed that the differentially expressed genes (DEGs) were mainly involved in energy metabolism and were significantly enriched in the tricarboxylic acid (TCA) cycle and oxidative phosphorylation (OXPHOS) pathway. The DEGs IDH3A, SUCLA2, and MDH2 in the TCA cycle and the DEGs NDUFA3, NDUFS7, UQCRC1, CYC1 and UQCRFS1 in the OXPHOS pathway were validated using mRNA and protein expression, and the results showed downregulation. The results of non-targeted metabolomics showed that 365 significant differential metabolites were identified under plateau hypoxia stress. KEGG enrichment analysis showed that the differential metabolites were mainly enriched in metabolic processes, such as energy, nucleotide and amino acid metabolism. Hypoxia exposure disrupted the TCA cycle and reduced the synthesis of amino acids and nucleotides by decreasing the concentration of cis-aconitate, α-ketoglutarate, NADH, NADPH and that of most amino acids, purines, and pyrimidines. Bioinformatics analysis was used to identify inflammatory genes related to hypoxia exposure and some of them were selected for verification. It was shown that the mRNA and protein expression levels of IL1B, IL12B, S100A8 and S100A9 in kidney tissues were upregulated under hypoxic exposure. The results suggest that hypoxia exposure inhibits the TCA cycle and the OXPHOS signalling pathway by inhibiting IDH3A, SUCLA2, MDH2, NDUFFA3, NDUFS7, UQCRC1, CYC1 and UQCRFS1, thereby suppressing energy metabolism, inducing amino acid and nucleotide deficiency and promoting inflammation, ultimately leading to kidney damage.

暴露在低氧环境中会破坏能量代谢并引发炎症。然而,低氧条件引起的能量代谢紊乱的途径和机制尚不清楚。在本研究中,建立了缺氧动物模型,并应用转录组学和非靶向代谢组学技术进一步研究缺氧暴露破坏能量代谢的途径和机制。转录组结果显示,3007个基因在低氧暴露下显著差异表达,基因本体论注释分析和京都基因与基因组百科全书(KEGG)富集分析表明,差异表达基因(DEGs)主要参与能量代谢,并在三羧酸(TCA)循环和氧化磷酸化(OXPHOS)途径中显著富集。使用mRNA和蛋白质表达验证了TCA循环中的DEG IDH3A、SUCLA2和MDH2以及OXPHOS途径中的DEGs NDUFA3、NDUFS7、UQCRC1、CYC1和UQCRFS1,结果显示下调。非靶向代谢组学结果显示,在高原缺氧胁迫下,共鉴定出365种显著的差异代谢产物。KEGG富集分析表明,差异代谢产物主要富集在能量、核苷酸和氨基酸代谢等代谢过程中。低氧暴露通过降低顺乌头酸、α-酮戊二酸、NADH、NADPH以及大多数氨基酸、嘌呤和嘧啶的浓度,破坏了TCA循环,并减少了氨基酸和核苷酸的合成。生物信息学分析用于鉴定与缺氧暴露相关的炎症基因,并选择其中一些进行验证。结果表明,在低氧暴露下,肾组织中IL1B、IL12B、S100A8和S100A9的mRNA和蛋白表达水平上调。结果表明,缺氧暴露通过抑制IDH3A、SUCLA2、MDH2、NDUFA3、NDUFS7、UQCRC1、CYC1和UQCRFS1来抑制TCA循环和OXPHOS信号通路,从而抑制能量代谢,诱导氨基酸和核苷酸缺乏并促进炎症,最终导致肾损伤。
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引用次数: 0
Integrin β5 is an independent prognostic marker for intrahepatic cholangiocarcinoma in a Chinese population. 整合素β5是中国人群肝内胆管癌的独立预后标志物。
Pub Date : 2023-09-28 eCollection Date: 2023-11-01 DOI: 10.3892/etm.2023.12231
Lixing Ma, Kang Song, Jinfeng Zang

Intrahepatic cholangiocarcinoma (ICC) is the second most common primary liver tumor and a major cause of cancer mortality worldwide. Integrin β5 (ITGB5) is considered to be involved in the intercellular signal transduction and regulation of tumorigenesis and development. The present study investigated the association between ITGB5 expression levels and the prognosis of ICC, as well as the effects of ITGB5 on the proliferation and invasion of ICC cells. RNA-sequencing transcriptomic profiling data of ICC samples were retrieved from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) databases. Tissue specimens from patients with ICC treated at Taizhou People's Hospital were collected and the ITGB5 expression levels were evaluated using immunohistochemical staining. The biological function of ITGB5 in ICC was investigated using Gene Ontology (GO), Gene Set Enrichment Analysis (GSEA) and in vitro experiments using HuCCT1 cells. After knocking down ITGB5 expression, cell proliferation was detected using Cell Counting Kit-8 assay, while cell invasion was assessed using Transwell assays. According to TCGA dataset, ITGB5 was highly expressed in ICC; however, there was no significant difference in prognosis between patients with high and low ITGB5 expression levels. High expression of ITGB5 was present in the tissues of patients with ICC from the GEO database, which was associated with poor prognosis. Survival analyses of the clinical data obtained in the present study revealed that high expression levels of ITGB5 in patients with ICC were associated with a reduced overall survival. GO and GSEA indicated that genes associated with ITGB5 were enriched in the extracellular matrix-receptor interaction and focal adhesion signaling pathways. Silencing ITGB5 inhibited the proliferation and invasion of ICC cells. In conclusion, ITGB5 may act as an essential regulator of ICC development and progression by influencing the proliferation and invasion of ICC cells. However, future studies with larger sample sizes are required to validate the role of ITGB5 in the prognosis of patients with ICC.

肝内胆管癌(ICC)是第二常见的原发性肝癌,也是全球癌症死亡的主要原因。整合素β5(ITGB5)被认为参与细胞间信号转导和肿瘤发生发展的调控。本研究探讨了ITGB5表达水平与ICC预后的关系,以及ITGB5对ICC细胞增殖和侵袭的影响。从癌症基因组图谱(TCGA)和基因表达综合(GEO)数据库检索ICC样本的RNA序列转录组分析数据。采集台州市人民医院ICC患者的组织标本,用免疫组织化学方法检测ITGB5的表达水平。采用基因本体论(GO)、基因集富集分析(GSEA)和HuCCT1细胞体外实验研究了ITGB5在ICC中的生物学功能。在敲低ITGB5表达后,使用细胞计数试剂盒-8测定法检测细胞增殖,同时使用Transwell测定法评估细胞侵袭。根据TCGA数据集,ITGB5在ICC中高度表达;然而,ITGB5表达水平高和低的患者的预后没有显著差异。来自GEO数据库的ICC患者组织中存在ITGB5的高表达,这与不良预后有关。本研究中获得的临床数据的生存分析显示,ICC患者中ITGB5的高表达水平与总生存率降低有关。GO和GSEA表明,与ITGB5相关的基因在细胞外基质受体相互作用和局灶性粘附信号通路中富集。沉默ITGB5抑制ICC细胞的增殖和侵袭。总之,ITGB5可能通过影响ICC细胞的增殖和侵袭而成为ICC发展和进展的重要调节因子。然而,未来需要更大样本量的研究来验证ITGB5在ICC患者预后中的作用。
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引用次数: 0
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Experimental and therapeutic medicine
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