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Integrated bioinformatics analysis and experimental validation reveals hub genes of rheumatoid arthritis. 综合生物信息学分析和实验验证揭示了类风湿性关节炎的中枢基因。
Pub Date : 2023-08-25 eCollection Date: 2023-10-01 DOI: 10.3892/etm.2023.12179
Kun Luo, Yumei Zhong, Yanding Guo, Jingwei Nie, Yimei Xu, Haiyan Zhou

Rheumatoid arthritis (RA) is an autoimmune disease characterized by systemic inflammation, especially synovitis, leading to joint damage. It is important to explore potential biomarkers and therapeutic targets to improve the clinical treatment of RA. However, the potential underlying mechanisms of action of available treatments for RA have not yet been fully elucidated. The present study investigated the potential biomarkers of RA and identified specific targets for therapeutic intervention. A comprehensive analysis was performed using mRNA files downloaded from the Gene Expression Omnibus. Differences in gene expression were analyzed and compared between the normal and RA groups. In addition, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment analyses were performed on differentially expressed genes (DEGs). A protein-protein interaction network, Molecular Complex Detection and cytoHubba network were evaluated to identify hub genes. Finally, using an experimental RA rat model induced by Freund's complete adjuvant (FCA), the expression of potential biomarkers or target genes in RA were verified through reverse transcription-quantitative PCR. The results of the mRNA dataset processing revealed 195 DEGs in patients with RA when compared with the healthy controls. Moreover, 10 hub genes were identified in patients with RA and four candidate mRNAs were identified, as follows: Discs large homolog-associated protein 5 (DLGAP5), kinesin family member 20A (KIF20A), maternal embryonic leucine zipper kinase (MELK) and nuclear division cycle 80 (NDC80). Finally, the bioinformatics analysis results were validated by quantifying the expression of the DLGAP5, KIF20A, MELK and NDC80 genes in the FCA-induced experimental RA rat model. The findings of the present study suggested that the treatment of RA may be successful through the inhibition of DLGAP5, KIF20A, MELK and NDC80 expression. Therefore, the targeting of these genes may result in more effective treatments for patients with RA.

类风湿性关节炎(RA)是一种自身免疫性疾病,其特征是全身炎症,尤其是滑膜炎,导致关节损伤。探索潜在的生物标志物和治疗靶点对提高RA的临床治疗具有重要意义。然而,现有治疗RA的潜在潜在潜在作用机制尚未完全阐明。本研究调查了RA的潜在生物标志物,并确定了治疗干预的特定靶点。使用从Gene Expression Omnibus下载的mRNA文件进行综合分析。分析并比较正常组和RA组之间基因表达的差异。此外,对差异表达基因(DEG)进行了基因本体论和京都基因和基因组百科全书途径富集分析。评估蛋白质-蛋白质相互作用网络、分子复合物检测和细胞Hubba网络以鉴定枢纽基因。最后,使用弗氏完全佐剂(FCA)诱导的实验性RA大鼠模型,通过逆转录定量PCR验证潜在生物标志物或靶基因在RA中的表达。mRNA数据集处理的结果显示,与健康对照组相比,RA患者中有195个DEG。此外,在RA患者中鉴定了10个枢纽基因,并鉴定了4个候选mRNAs,如下:Discs大同源物相关蛋白5(DLGAP5)、驱动蛋白家族成员20A(KIF20A)、母体胚胎亮氨酸拉链激酶(MELK)和核分裂周期80(NDC80)。最后,通过量化DLGAP5、KIF20A、MELK和NDC80基因在FCA诱导的实验性RA大鼠模型中的表达,验证了生物信息学分析结果。本研究结果表明,通过抑制DLGAP5、KIF20A、MELK和NDC80的表达,RA的治疗可能是成功的。因此,靶向这些基因可能会为RA患者带来更有效的治疗。
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引用次数: 0
Detection of N‑glycoprotein associated with IgA nephropathy in urine as a potential diagnostic biomarker using glycosylated proteomic analysis. 使用糖基化蛋白质组分析检测尿液中与IgA肾病相关的N-糖蛋白作为潜在的诊断生物标志物。
Pub Date : 2023-08-23 eCollection Date: 2023-10-01 DOI: 10.3892/etm.2023.12177
Junjie Liu, Liuguo Wu, Hongjing Gu, Miaomiao Lu, Jiong Zhang, Hongli Zhou

The aim of the present study was to elucidate the potential diagnostic value of urinary N-glycoprotein in patients with IgA nephropathy (IgAN) using mass spectrometry (MS). All procedures were performed between June 2021 and June 2023 at Guangan People's Hospital (Guangan, China). Fresh mid-morning fasting midstream urine samples were collected from a total of 30 patients with IgAN and 30 sex- and age-matched healthy volunteers. Data acquired from 6 participants are available through ProteomeXchange with the identifier PXD041151. By comparison between the IgAN group (n=3) and healthy controls (n=3) and selection criteria of P<0.05 and |log fold-change|>2, a total of 11 upregulated and 22 downregulated glycoproteins in patients with IgAN were identified. The results of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses suggested that glycoproteins are involved in various functions, such as the regulation of cell growth, cell adhesion, cellular component organization and protein binding, as well as multiple pathways, including p53, Notch and mTOR signaling pathways. The urine levels of afamin were further measured by ELISA in a validation cohort to assess the diagnostic performance of the single indicator model. In conclusion, MS-based proteomics of urinary glycoproteins may be an alternative option for diagnosing patients with IgAN. Biomarkers of IgAN may include, but are not limited to, CCL25, PD-L1, HLA-DRB1, IL7RD and WDR82. In addition, the levels of urinary AFM indicators are of diagnostic value for IgAN.

本研究的目的是用质谱法(MS)阐明尿N-糖蛋白对IgA肾病(IgAN)患者的潜在诊断价值。所有手术均于2021年6月至2023年6月在广安人民医院(中国广安)进行。从总共30名IgAN患者和30名性别和年龄匹配的健康志愿者身上采集了新鲜的上午禁食中期尿液样本。从6名参与者获得的数据可通过ProteomeXchange获得,标识符为PXD041151。通过比较IgAN组(n=3)和健康对照组(n=3)以及P2的选择标准,在IgAN患者中共鉴定出11种上调和22种下调的糖蛋白。基因本体论(GO)和京都基因与基因组百科全书(KEGG)的分析结果表明,糖蛋白参与多种功能,如调节细胞生长、细胞粘附、细胞成分组织和蛋白质结合,以及多种途径,包括p53、Notch和mTOR信号通路。在一个验证队列中,通过ELISA进一步测量尿液中的阿法明水平,以评估单指标模型的诊断性能。总之,基于MS的尿糖蛋白蛋白质组学可能是诊断IgAN患者的替代选择。IgAN的生物标志物可以包括但不限于CCL25、PD-L1、HLA-DRB1、IL7RD和WDR82。此外,尿液AFM指标水平对IgAN具有诊断价值。
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引用次数: 0
Treatment with sivelestat sodium of acute respiratory distress syndrome induced by chemical pneumonitis: A report of three cases. 西韦司他钠治疗化学性肺炎引起的急性呼吸窘迫综合征(附3例报告)。
Pub Date : 2023-08-22 eCollection Date: 2023-10-01 DOI: 10.3892/etm.2023.12175
Liang Jing, Xi Peng, Dayong Li, Yusen Qin, Yaqin Song, Wei Zhu

Inhalation of acid fumes and aspiration of liquid substances or gastric contents may not initiate dyspnea within several hours after exposure but may result in delayed onset of alveolar edema. The present report presents three cases of inhalation or aspiration of chemical substances that resulted in acute respiratory distress syndrome (ARDS). Due to different underlying reasons, three patients developed ARDS resulting from chemical pneumonitis and pulmonary infection. From patients with dyspnea, dry rales could be heard in both lungs, with <92% percutaneous oxygen saturation at room air. All patients were treated using a high-flow nasal cannula and sivelestat sodium. Oxygenation gradually improved and the patients were discharged without adverse events. These cases suggest that early treatment with sivelestat sodium may improve the clinical outcomes of patients with ARDS.

吸入酸性烟雾和吸入液体物质或胃内容物可能不会在暴露后数小时内引发呼吸困难,但可能导致肺泡水肿的延迟发作。本报告介绍了三例吸入或吸入化学物质导致急性呼吸窘迫综合征(ARDS)的病例。由于不同的潜在原因,三名患者因化学性肺炎和肺部感染而出现ARDS。呼吸困难患者的双肺均可听到干啰音
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引用次数: 0
Effects and mechanism of Rictor interference in podocyte injury induced by high glucose. Rictor干预对高糖诱导足细胞损伤的作用及机制。
Pub Date : 2023-08-22 eCollection Date: 2023-10-01 DOI: 10.3892/etm.2023.12172
Yan Zeng, Changbin Xiong, Yinxiang Chen, Chunyun Yang, Qiuyue Li

Rapamycin-insensitive companion of mTOR (Rictor) is a critical effector of mTOR protein complex 2 (mTORC2). The aim of the present study was to investigate the effect of Rictor in the mTORC2 signaling pathway in high glucose (HG)-induced diabetic podocyte injury by silencing the expression of Rictor. In the present study, mouse podocytes were treated with glucose (150 mM) and mannitol (200 mM), the Rictor gene was silenced using small interfering RNA (siRNA). Apoptosis was detected by flow cytometry, whereas podocyte cytoskeletal protein expression was detected by western blotting (WB) and immunofluorescence staining. The results demonstrated that, compared with that in the control group, the podocyte apoptotic rate was significantly increased in the mannitol group (negative group) and the groups that were treated with glucose (model groups). The podocyte apoptotic rate in the model + Rictor siRNA group was significantly decreased compared with that in the negative, model and the model glucose + siRNA negative control (NC) groups. WB indicated that the protein expression levels of podocalyxin and synaptopodin were reduced in the model and model + siRNA NC groups compared with those in the normal control and negative groups. Additionally, the protein expression levels of α-smooth muscle actin (α-SMA) and P-AKT/AKT were increased in the model and model + siRNA NC groups compared with the those in control and negative groups. Compared with those the model and model + siRNA NC groups, the protein expression levels of podocalyxin and synaptopodin were increased, whilst those of the α-SMA and P-AKT/AKT proteins were decreased, in the model + Rictor siRNA group. Results from immunofluorescence analysis were basically consistent with those of WB. Therefore, results of the present study suggest that silencing of the Rictor gene may reduce the damage to podocytes induced by HG, such that the Rictor/mTORC2 signaling pathway may be involved in the remodeling of podocyte actin cytoskeletal in diabetes.

雷帕霉素不敏感的mTOR伴侣(Rictor)是mTOR蛋白复合物2(mTORC2)的关键效应子。本研究的目的是通过沉默Rictor的表达来研究Rictor在高糖(HG)诱导的糖尿病足细胞损伤中的mTORC2信号通路中的作用。在本研究中,用葡萄糖(150mM)和甘露醇(200mM)处理小鼠足细胞,使用小干扰RNA(siRNA)沉默Rictor基因。流式细胞术检测细胞凋亡,免疫荧光染色检测足细胞骨架蛋白表达。结果表明,与对照组相比,甘露醇组(阴性组)和葡萄糖治疗组(模型组)的足细胞凋亡率显著增加。与阴性、模型和模型葡萄糖+siRNA阴性对照组(NC)相比,模型+Rictor siRNA组的足细胞凋亡率显著降低。WB表明,与正常对照组和阴性组相比,模型组和模型+siRNA NC组的足角蛋白和突触足蛋白的蛋白表达水平降低。此外,与对照组和阴性组相比,模型组和模型+siRNA-NC组的α-平滑肌肌动蛋白(α-SMA)和P-AKT/AKT的蛋白表达水平增加。与模型组和模型+siRNA-NC组相比,在模型+Rictor siRNA组中,足角蛋白和突触足蛋白的蛋白表达水平增加,而α-SMA和P-AKT/AKT蛋白的表达水平降低。免疫荧光分析结果与WB结果基本一致。因此,本研究的结果表明,Rictor基因的沉默可以减少HG对足细胞的损伤,因此Rictor/mTORC2信号通路可能参与糖尿病足细胞肌动蛋白细胞骨架的重塑。
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引用次数: 0
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Experimental and therapeutic medicine
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