{"title":"tidylda: An R Package for Latent Dirichlet Allocation\u0000Using ‘tidyverse’ Conventions","authors":"Tommy Jones","doi":"10.21105/joss.06800","DOIUrl":"https://doi.org/10.21105/joss.06800","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"35 17","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141804145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"mathlib: A Scala package for readable, verifiable and\u0000sustainable simulations of formal theory","authors":"Mark Blokpoel","doi":"10.21105/joss.06049","DOIUrl":"https://doi.org/10.21105/joss.06049","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"105 11","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141802305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
T. Sipkens, Ramin Dastanpour, Una Trivanovic, Hamed Nikookar, S. Rogak
{"title":"atems: Analysis tools for TEM images of carbonaceous\u0000particles","authors":"T. Sipkens, Ramin Dastanpour, Una Trivanovic, Hamed Nikookar, S. Rogak","doi":"10.21105/joss.06416","DOIUrl":"https://doi.org/10.21105/joss.06416","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"42 22","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141805611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tarmo Nurmi, Arash Badie-Modiri, Corinna Coupette, Mikko Kivelä
{"title":"pymnet: A Python Library for Multilayer\u0000Networks","authors":"Tarmo Nurmi, Arash Badie-Modiri, Corinna Coupette, Mikko Kivelä","doi":"10.21105/joss.06930","DOIUrl":"https://doi.org/10.21105/joss.06930","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"28 12","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141808756","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ole-Christian Galbo Engstrøm, E. Dreier, Birthe Pontoppidan Møller Jespersen, Kim Steenstrup Pedersen
{"title":"IKPLS: Improved Kernel Partial Least Squares and Fast\u0000Cross-Validation Algorithms for Python with CPU and GPU Implementations\u0000Using NumPy and JAX","authors":"Ole-Christian Galbo Engstrøm, E. Dreier, Birthe Pontoppidan Møller Jespersen, Kim Steenstrup Pedersen","doi":"10.21105/joss.06533","DOIUrl":"https://doi.org/10.21105/joss.06533","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"137 39","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141810895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B. Baumeier, Jens Wehner, N. Renaud, F. Z. Ruiz, Rene Halver, Pranav Madhikar, Ruben Gerritsen, G. Tirimbò, Javier Sijen, David Rosenberger, Joshua S. Brown, Vivek Sundaram, Jakub Krajniak, Marvin P Bernhardt, Christoph Junghans
{"title":"VOTCA: multiscale frameworks for quantum and classical\u0000simulations in soft matter","authors":"B. Baumeier, Jens Wehner, N. Renaud, F. Z. Ruiz, Rene Halver, Pranav Madhikar, Ruben Gerritsen, G. Tirimbò, Javier Sijen, David Rosenberger, Joshua S. Brown, Vivek Sundaram, Jakub Krajniak, Marvin P Bernhardt, Christoph Junghans","doi":"10.21105/joss.06864","DOIUrl":"https://doi.org/10.21105/joss.06864","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"121 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141812065","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Elipot, Philippe Miron, Milan Curcic, Kevin Santana, Rick Lumpkin
{"title":"Clouddrift: a Python package to accelerate the use of\u0000Lagrangian data for atmospheric, oceanic, and climate sciences","authors":"S. Elipot, Philippe Miron, Milan Curcic, Kevin Santana, Rick Lumpkin","doi":"10.21105/joss.06742","DOIUrl":"https://doi.org/10.21105/joss.06742","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"35 19","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141813962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
R. P. C. Coelho, A. F. C. Alves, T. M. N. Pires, F. M. A. Pires
{"title":"piglot: an Open-source Package for Derivative-free\u0000Optimisation of Numerical Responses","authors":"R. P. C. Coelho, A. F. C. Alves, T. M. N. Pires, F. M. A. Pires","doi":"10.21105/joss.06652","DOIUrl":"https://doi.org/10.21105/joss.06652","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"117 4","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141811781","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The nonlinear Schrödinger equation (NLSE) is a general nonlinear equation used to model the propagation of light in nonlinear media. This equation is mathematically isomorphic to the Gross-Pitaevskii equation (GPE) (Pitaevskij & Stringari, 2016) describing the evolution of cold atomic ensembles. Recently, the growing field of quantum fluids of light (Carusotto & Ciuti, 2013) has proven a fruitful testbed for several fundamental quantum and classical phenomena such as superfluidity (Michel et al., 2018) or turbulence (Baker-Rasooli et al., 2023). Providing a flexible, modern and performant framework to solve these equations is crucial to model realistic experimental scenarios.
{"title":"NLSE: A Python package to solve the nonlinear\u0000Schrödinger equation","authors":"Tangui Aladjidi, C. Piekarski, Q. Glorieux","doi":"10.21105/joss.06607","DOIUrl":"https://doi.org/10.21105/joss.06607","url":null,"abstract":"The nonlinear Schrödinger equation (NLSE) is a general nonlinear equation used to model the propagation of light in nonlinear media. This equation is mathematically isomorphic to the Gross-Pitaevskii equation (GPE) (Pitaevskij & Stringari, 2016) describing the evolution of cold atomic ensembles. Recently, the growing field of quantum fluids of light (Carusotto & Ciuti, 2013) has proven a fruitful testbed for several fundamental quantum and classical phenomena such as superfluidity (Michel et al., 2018) or turbulence (Baker-Rasooli et al., 2023). Providing a flexible, modern and performant framework to solve these equations is crucial to model realistic experimental scenarios.","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"31 17","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141814288","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. Stcherbinine, Y. Langevin, John Carter, M. Vincendon, Y. Leseigneur, O. Barraud
{"title":"OMEGA-Py: Python Tools for OMEGA Data","authors":"A. Stcherbinine, Y. Langevin, John Carter, M. Vincendon, Y. Leseigneur, O. Barraud","doi":"10.21105/joss.06566","DOIUrl":"https://doi.org/10.21105/joss.06566","url":null,"abstract":"","PeriodicalId":94101,"journal":{"name":"Journal of open source software","volume":"29 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141819497","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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