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A biochemical and mechanical model of injury-induced intimal thickening 损伤性内膜增厚的生化和力学模型
Pub Date : 2017-03-01 DOI: 10.1093/imammb/dqv040
Pak-Wing Fok;Rebecca Sanft
In this paper, we investigate an axisymmetric model of intimal thickening using hyperelasticity theory. Our model describes the growth of the arterial intima due to cell proliferation which, in turn, is driven by the release of a cytokine such as platelet-derived growth factor (PDGF). With the growth rate tied to both local stress and the local concentration of PDGF, we derive a quadruple free boundary problem with different regions of the vessel wall characterized by different homeostatic stress. We compare our model predictions to rabbit and rodent models of atherosclerosis and find that in order to achieve the growth rates reported in the experiments, growth must be mainly cytokine induced rather than stress induced. Our model is also able to reproduce Glagov remodelling where, as a vessel becomes more diseased, the lumen expands before rapidly contracting.
本文用超弹性理论研究了一个轴对称的内膜增厚模型。我们的模型描述了由于细胞增殖而导致的动脉内膜生长,而细胞增殖反过来又由细胞因子(如血小板衍生生长因子(PDGF))的释放驱动。随着生长速率与局部应力和PDGF的局部浓度相关联,我们得到了一个四重自由边界问题,其中血管壁的不同区域具有不同的自稳态应力特征。我们将我们的模型预测与兔子和啮齿动物的动脉粥样硬化模型进行了比较,发现为了达到实验中报道的生长速度,生长必须主要由细胞因子诱导而不是应激诱导。我们的模型还能够重现格拉戈夫重构,当血管病变加重时,管腔在迅速收缩之前会扩张。
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引用次数: 14
The usage of a three-compartment model to investigate the metabolic differences between hepatic reductase null and wild-type mice 使用三室模型研究肝还原酶缺失小鼠和野生型小鼠之间的代谢差异
Pub Date : 2017-03-01 DOI: 10.1093/imammb/dqv029
Lydia Hill;Mark A. J. Chaplain;Roland Wolf;Yury Kapelyukh
The Cytochrome P450 (CYP) system is involved in 90% of the human body's interactions with xenobiotics and due to this, it has become an area of avid research including the creation of transgenic mice. This paper proposes a three-compartment model which is used to explain the drug metabolism in the Hepatic Reductase Null (HRN) mouse developed by the University of Dundee (Henderson, C. J., Otto, D. M. E., Carrie, D., Magnuson, M. A., McLaren, A. W., Rosewell, I. and Wolf, C. R. (2003) Inactivation of the hepatic cytochrome p450 system by conditional deletion of hepatic cytochrome p450 reductase. J. Biol. Chem. 278, 13480–13486). The model is compared with a two-compartment model using experimental data from studies using wild-type and HRN mice. This comparison allowed for metabolic differences between the two types of mice to be isolated. The three sets of drug data (Gefitinib, Midazolam and Thalidomide) showed that the transgenic mouse has a decreased rate of metabolism.
细胞色素P450 (CYP)系统参与了人体与外源药物90%的相互作用,正因为如此,它已成为一个热门的研究领域,包括转基因小鼠的创建。本文提出了一个三室模型,用于解释由邓迪大学(Henderson, c.j ., Otto, d.m.e ., Carrie, D., Magnuson, m.a ., McLaren, a.w ., Rosewell, I.和Wolf, c.r .(2003)通过肝细胞色素p450还原酶的条件缺失使肝细胞色素p450系统失活。生物。化学,278,13480-13486)。利用野生型和HRN小鼠研究的实验数据,将该模型与双室模型进行比较。这种比较可以分离出两种小鼠之间的代谢差异。三组药物数据(吉非替尼、咪达唑仑和沙利度胺)显示转基因小鼠的代谢率降低。
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引用次数: 2
A non-local model for cancer stem cells and the tumour growth paradox 癌症干细胞的非局部模型和肿瘤生长悖论
Pub Date : 2017-03-01 DOI: 10.1093/imammb/dqv037
I. Borsi;A. Fasano;M. Primicerio;T. Hillen
The tumour growth paradox refers to the observation that incomplete treatment of cancers can enhance their growth. As shown here and elsewhere, the existence of cancer stem cells (CSCs) can explain this effect. CSC are less sensitive to treatments, hence any stress applied to the tumour selects for CSC, thereby increasing the fitness of the tumour. In this paper, we use a mathematical model to understand the role of CSC in the progression of cancer. Our model is a rather general system of integro-differential equations for tumour growth and tumour spread. Such a model has never been analysed, and we prove results on local and global existence of solutions, their uniqueness and their boundedness. We show numerically that this model exhibits the tumour growth paradox for all parameters tested. This effect becomes more relevant for small renewal rate of the CSC.
肿瘤生长悖论指的是对癌症的不完全治疗可以促进其生长的观察。正如这里和其他地方所显示的,癌症干细胞(CSCs)的存在可以解释这种效应。CSC对治疗不太敏感,因此任何施加于肿瘤的压力都会选择CSC,从而增加肿瘤的适应性。在本文中,我们使用一个数学模型来理解CSC在癌症进展中的作用。我们的模型是肿瘤生长和肿瘤扩散的一个相当一般的积分-微分方程组。这类模型从未被分析过,我们证明了解的局部和全局存在性、唯一性和有界性。我们在数值上表明,该模型显示了所有测试参数的肿瘤生长悖论。这种效应与CSC的小更新率更为相关。
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引用次数: 0
Uncovering the natural history of cancer from post-mortem cross-sectional diameters of hepatic metastases 从死后肝转移瘤的横切面直径揭示癌症的自然历史
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv026
Leonid Hanin;Jason Rose
We develop a mathematical and statistical methodology for estimation of important unobservable characteristics of the individual natural history of cancer from a sample of cross-sectional diameters of liver metastases measured at autopsy. Estimation of the natural history of cancer is based on a previously proposed stochastic model of cancer progression tailored to this type of observations. The model accounts for primary tumour growth, shedding of metastases, their selection, latency and growth in a given secondary site. The model was applied to the aforementioned data on 428 liver metastases detected in one untreated small cell lung cancer patient. Identifiable model parameters were estimated by the method of maximum likelihood and through minimizing the $L^{2}$ distance between theoretical and empirical cumulative distribution functions. The model with optimal parameters provided an excellent fit to the data. Results of data analysis support, if only indirectly, the hypothesis of the existence of stem-like cancer cells in the case of small cell lung carcinoma and point to the possibility of suppression of metastatic growth by a large primary tumour. They also lead to determination of the lower and upper bounds for the age of cancer onset and expected duration of metastatic latency. Finally, model-based inference on the patient's natural history of cancer allowed us to conclude that resection of the primary tumour would most likely not have had a curative effect.
我们开发了一种数学和统计方法,用于从尸检时测量的肝转移的横截面直径样本中估计癌症个体自然史的重要不可观察特征。对癌症自然历史的估计是基于先前提出的针对这种类型的观察量身定制的癌症进展的随机模型。该模型解释了原发肿瘤的生长、转移的脱落、它们的选择、潜伏期和在给定继发部位的生长。将该模型应用于上述数据,其中包括一名未经治疗的小细胞肺癌患者中检测到的428例肝转移。通过最大似然法和最小化理论和经验累积分布函数之间的距离来估计可识别的模型参数。采用最优参数的模型对数据具有很好的拟合效果。数据分析的结果间接支持了小细胞肺癌中存在干细胞样癌细胞的假设,并指出了大原发肿瘤抑制转移生长的可能性。它们还导致确定癌症发病年龄和转移潜伏期预期持续时间的下限和上限。最后,基于模型的推断患者的自然癌症病史使我们得出结论,切除原发肿瘤很可能没有疗效。
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引用次数: 7
A fluid dynamics multidimensional model of biofilm growth: stability, influence of environment and sensitivity 生物膜生长的流体动力学多维模型:稳定性、环境影响和敏感性
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv024
F. Clarelli;C. Di Russo;R. Natalini;M. Ribot
In this article, we study in detail the fluid dynamics system proposed in Clarelli et al. (2013, J. Math. Biol., 66, 1387–1408) to model the formation of cyanobacteria biofilms. After analysing the linear stability of the unique non-trivial equilibrium of the system, we introduce in the model the influence of light and temperature, which are two important factors for the development of a cyanobacteria biofilm. Since the values of the coefficients we use for our simulations are estimated through information found in the literature, some sensitivity and robustness analyses on these parameters are performed. All these elements enable us to control and to validate the model we have already derived and to present some numerical simulations in the 2D and the 3D cases.
本文详细研究了Clarelli et al. (2013, J. Math.)提出的流体动力学系统。医学杂志。(生物工程学报,66,1387-1408)来模拟蓝藻生物膜的形成。在分析了系统唯一非平凡平衡的线性稳定性后,我们在模型中引入了光和温度的影响,这是蓝藻生物膜发展的两个重要因素。由于我们用于模拟的系数值是通过文献中的信息估计的,因此对这些参数进行了一些敏感性和鲁棒性分析。所有这些元素使我们能够控制和验证我们已经导出的模型,并在2D和3D情况下提供一些数值模拟。
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引用次数: 16
On the influence of an equatorial cerclage on closure of posterior retinal detachment 赤道环扎术对后视网膜脱离闭合的影响
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv028
Peinan Ge;William J. Bottega;Jonathan L. Prenner;Howard F. Fine
A mechanics-based mathematical model of an eye possessing a posterior retinal detachment is presented for the case where an encircling scleral buckle (a cerclage) is sutured around the equator of the eye. The mechanical behaviour of the retina and the globe, both before and after applying the cerclage, is studied. An energy formulation yields the self-consistent equations of equilibrium and boundary conditions of the ocular system, and analytical solutions are established for the scleral buckle, for the globe and for the detached segment of the retina. Results of numerical simulations based on the solutions unveil characteristic behaviour of the ocular system, and demonstrate the influence of the scleral buckle, as well as of the pressure difference between the vitreous cavity and the subretinal space, on the deformation of the eye and on closing the region of retinal detachment. The results indicate that a scleral buckle encircling the equator, normally used for closing retinal tears and associated retinal detachments in the immediate vicinity of the buckle, can have a marked influence on bringing the detached segment of neurosensory retina back into contact with the retinal pigment epithelium, even for detachments at the posterior of the eye.
一个力学为基础的数学模型的眼睛具有后视网膜脱离的情况下,包膜扣(环)被缝合在赤道周围的眼睛。研究了应用环扎前后视网膜和眼球的力学行为。能量公式产生了眼系统平衡和边界条件的自洽方程,并为巩膜扣、眼球和视网膜分离段建立了解析解。基于这些解决方案的数值模拟结果揭示了眼系统的特征行为,并证明了巩膜扣以及玻璃体腔和视网膜下间隙之间的压力差对眼睛变形和视网膜脱离区域闭合的影响。结果表明,环绕赤道的巩膜扣通常用于闭合视网膜撕裂和紧靠该扣的相关视网膜脱离,可显著影响神经感觉视网膜的脱离部分与视网膜色素上皮的接触,甚至对于眼睛后部的脱离也是如此。
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引用次数: 4
Allee effects in tritrophic food chains: some insights in pest biological control 营养食物链中的狭缝效应:害虫生物防治的一些见解
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv027
Michel Iskin da S. Costa;Lucas dos Anjos
Release of natural enemies to control pest populations is a common strategy in biological control. However, its effectiveness is supposed to be impaired, among other factors, by Allee effects in the biological control agent and by the fact that introduced pest natural enemies interact with some native species of the ecosystem. In this work, we devise a tritrophic food chain model where the assumptions previously raised are proved correct when a hyperpredator attacks the introduced pest natural enemy by a functional response type 2 or 3. Moreover, success of pest control is shown to be related to the release of large amounts (i.e., inundative releases) of natural enemies.
释放天敌控制害虫种群是生物防治的常用策略。然而,除其他因素外,生物防治剂的Allee效应以及引入的害虫天敌与生态系统的一些本地物种相互作用可能会削弱其有效性。在这项工作中,我们设计了一个三营养食物链模型,其中当超级捕食者通过功能反应类型2或3攻击引入的害虫天敌时,先前提出的假设被证明是正确的。此外,虫害防治的成功与大量释放天敌(即淹没性释放)有关。
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引用次数: 3
Effective equations for anisotropic glioma spread with proliferation: a multiscale approach and comparisons with previous settings 各向异性胶质瘤扩散与增殖的有效方程:多尺度方法和与先前设置的比较
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv030
Christian Engwer;Alexander Hunt;Christina Surulescu
Glioma is a common type of primary brain tumour, with a strongly invasive potential, often exhibiting non-uniform, highly irregular growth. This makes it difficult to assess the degree of extent of the tumour, hence bringing about a supplementary challenge for the treatment. It is therefore necessary to understand the migratory behaviour of glioma in greater detail. In this paper, we propose a multiscale model for glioma growth and migration. Our model couples the microscale dynamics (reduced to the binding of surface receptors to the surrounding tissue) with a kinetic transport equation for the cell density on the mesoscopic level of individual cells. On the latter scale, we also include the proliferation of tumour cells via effects of interaction with the tissue. An adequate parabolic scaling yields a convection–diffusion–reaction equation, for which the coefficients can be explicitly determined from the information about the tissue obtained by diffusion tensor imaging (DTI). Numerical simulations relying on DTI measurements confirm the biological findings that glioma spread along white matter tracts.
胶质瘤是一种常见的原发性脑肿瘤,具有很强的侵袭性,通常表现为不均匀、高度不规则的生长。这使得很难评估肿瘤的程度,因此给治疗带来了补充挑战。因此,有必要更详细地了解胶质瘤的迁移行为。本文提出了胶质瘤生长和迁移的多尺度模型。我们的模型将微观尺度动力学(减少到表面受体与周围组织的结合)与单个细胞介观水平上的细胞密度动力学运输方程耦合在一起。在后一种尺度上,我们还包括肿瘤细胞通过与组织相互作用的影响而增殖。充分的抛物标度产生对流-扩散-反应方程,其系数可以根据扩散张量成像(DTI)获得的组织信息显式确定。依靠DTI测量的数值模拟证实了神经胶质瘤沿白质束扩散的生物学发现。
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引用次数: 36
A Green's function method for simulation of time-dependent solute transport and reaction in realistic microvascular geometries 模拟微血管几何中随时间变化的溶质输运和反应的格林函数方法
Pub Date : 2016-12-01 DOI: 10.1093/imammb/dqv031
Timothy W. Secomb
A novel theoretical method is presented for simulating the spatially resolved convective and diffusive transport of reacting solutes between microvascular networks and the surrounding tissues. The method allows for efficient computational solution of problems involving convection and non-linear binding of solutes in blood flowing through microvascular networks with realistic 3D geometries, coupled with transvascular exchange and diffusion and reaction in the surrounding tissue space. The method is based on a Green's function approach, in which the solute concentration distribution in the tissue is expressed as a sum of fields generated by time-varying distributions of discrete sources and sinks. As an example of the application of the method, the washout of an inert diffusible tracer substance from a tissue region perfused by a network of microvessels is simulated, showing its dependence on the solute's transvascular permeability and tissue diffusivity. Exponential decay of the washout concentration is predicted, with rate constants that are about 10-30% lower than the rate constants for a tissue cylinder model with the same vessel length, vessel surface area and blood flow rate per tissue volume.
提出了一种新的理论方法来模拟反应溶质在微血管网络和周围组织之间的空间分辨对流和扩散输运。该方法可以有效地计算解决血液中溶质的对流和非线性结合问题,这些问题包括通过微血管网络流动的溶质,具有真实的3D几何形状,以及周围组织空间的跨血管交换、扩散和反应。该方法基于格林函数方法,其中组织中的溶质浓度分布表示为由离散源和汇的时变分布产生的场的总和。作为该方法应用的一个例子,模拟了惰性扩散示踪物质从微血管网络灌注的组织区域的冲洗,显示了其依赖于溶质的跨血管渗透性和组织扩散性。预测水洗浓度呈指数衰减,其速率常数比具有相同血管长度、血管表面积和单位组织体积血流量的组织圆柱体模型的速率常数低约10-30%。
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引用次数: 23
Back matter 背景材料
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引用次数: 0
期刊
Mathematical medicine and biology : a journal of the IMA
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