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Asymptotic properties of the Lotka-Volterra competition and mutualism model under stochastic perturbations. 随机扰动下 Lotka-Volterra 竞争与互惠模型的渐近特性
Pub Date : 2024-03-15 DOI: 10.1093/imammb/dqae001
Leonid Shaikhet, Andrei Korobeinikov

Stochastically perturbed models, where the white noise type stochastic perturbations are proportional to the current system state, the most realistically describe real-life biosystems. However, such models essentially have no equilibrium states apart from one at the origin. This feature makes analysis of such models extremely difficult. Probably, the best result that can be found for such models is finding of accurate estimations of a region in the model phase space that serves as an attractor for model trajectories. In this paper, we consider a classical stochastically perturbed Lotka-Volterra model of competing or symbiotic populations, where the white noise type perturbations are proportional to the current system state. Using the direct Lyapunov method in a combination with a recently developed technique, we establish global asymptotic properties of this model. In order to do this, we, firstly, construct a Lyapunov function that is applicable to the both competing (and globally stable) and symbiotic deterministic Lotka-Volterra models. Then, applying this Lyapunov function to the stochastically perturbed model, we show that solutions with positive initial conditions converge to a certain compact region in the model phase space and oscillate around this region thereafter. The direct Lyapunov method allows to find estimates for this region. We also show that if the magnitude of the noise exceeds a certain critical level, then some or all species extinct via process of the stochastic stabilization ('stabilization by noise'). The approach applied in this paper allows to obtain necessary conditions for the extinction. Sufficient conditions for the extinction (that for this model occurs via the process that is known as the 'stochastic stabilization', or the 'stabilization by noise') are found applying the Khasminskii-type Lyapunov functions.

随机扰动模型,即白噪声类型的随机扰动与当前系统状态成正比,最真实地描述了现实生活中的生物系统。然而,除了原点的平衡状态外,这类模型基本上没有其他平衡状态。这一特点使得对这类模型的分析极为困难。对于这类模型来说,最好的结果可能就是找到模型相空间中作为模型轨迹吸引子的精确估计区域。在本文中,我们考虑了竞争或共生种群的经典随机扰动 Lotka-Volterra 模型,其中白噪声类型的扰动与当前系统状态成正比。我们利用直接李亚普诺夫方法,结合最近开发的一种技术,建立了该模型的全局渐近特性。为此,我们首先构建了一个适用于竞争(和全局稳定)和共生确定性 Lotka-Volterra 模型的 Lyapunov 函数。然后,我们将这个 Lyapunov 函数应用于随机扰动模型,结果表明,具有正初始条件的解会收敛到模型相空间中的某个紧凑区域,并在该区域附近振荡。直接利用 Lyapunov 方法可以对该区域进行估计。我们还证明,如果噪声的大小超过某个临界水平,那么通过随机稳定过程("噪声稳定"),部分或全部物种就会灭绝。本文采用的方法可以获得物种灭绝的必要条件。利用哈斯明斯基型李亚普诺夫函数,可以找到物种灭绝的充分条件(对该模型而言,物种灭绝是通过 "随机稳定 "或 "噪声稳定 "过程发生的)。
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引用次数: 0
Dosage optimization for reducing tumor burden using a phenotype-structured population model with a drug-resistance continuum. 利用具有耐药性连续体的表型结构群体模型优化剂量,减轻肿瘤负担。
Pub Date : 2024-03-15 DOI: 10.1093/imammb/dqae003
Lifeng Han, Osman N Yogurtcu, Marisabel Rodriguez Messan, Wencel Valega-Mackenzie, Ujwani Nukala, Hong Yang

Drug resistance is a significant obstacle to effective cancer treatment. To gain insights into how drug resistance develops, we adopted a concept called fitness landscape and employed a phenotype-structured population model by fitting to a set of experimental data on a drug used for ovarian cancer, olaparib. Our modeling approach allowed us to understand how a drug affects the fitness landscape and track the evolution of a population of cancer cells structured with a spectrum of drug resistance. We also incorporated pharmacokinetic (PK) modeling to identify the optimal dosages of the drug that could lead to long-term tumor reduction. We derived a formula that indicates that maximizing variation in plasma drug concentration over a dosing interval could be important in reducing drug resistance. Our findings suggest that it may be possible to achieve better treatment outcomes with a drug dose lower than the levels recommended by the drug label. Acknowledging the current limitations of our work, we believe that our approach, which combines modeling of both PK and drug resistance evolution, could contribute to a new direction for better designing drug treatment regimens to improve cancer treatment.

耐药性是有效治疗癌症的一大障碍。为了深入了解耐药性是如何产生的,我们采用了一个名为 "适应性景观"(fitness landscape)的概念,并通过拟合一组卵巢癌药物奥拉帕利(Olaparib)的实验数据,采用了一种表型结构群体模型。我们的建模方法使我们能够了解药物是如何影响适应性景观的,并跟踪具有耐药性谱系结构的癌细胞群体的进化过程。我们还结合了药代动力学(PK)建模,以确定能够长期减少肿瘤的最佳药物剂量。我们推导出的公式表明,在给药间隔内使血浆药物浓度变化最大化对减少耐药性非常重要。我们的研究结果表明,用低于药物标签推荐水平的药物剂量可能会取得更好的治疗效果。尽管我们的工作目前还存在局限性,但我们相信,我们的方法结合了 PK 和耐药性演变的建模,可以为更好地设计药物治疗方案以改善癌症治疗提供新的方向。
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引用次数: 0
Impact of climate change on vegetation patterns in Altay Prefecture, China. 气候变化对中国阿勒泰地区植被格局的影响。
Pub Date : 2024-03-15 DOI: 10.1093/imammb/dqae002
Li Li, Yi-Zhi Pang, Gui-Quan Sun, Shigui Ruan

Altay Prefecture, a typical arid region in northwestern China, has experienced the climate transition from warming-drying to warming-wetting since 1980s and has attracted widespread attention. Nonetheless, it is still unclear how climate change has influenced the distribution of vegetation in this region. In this paper, a reaction-diffusion model of the climate-vegetation system is proposed to study the impact of climate change (precipitation, temperature and carbon dioxide concentration) on vegetation patterns in Altay Prefecture. Our results indicate that the tendency of vegetation growth in Altay Prefecture improved gradually from 1985 to 2010. Under the current climate conditions, the increase of precipitation results in the change of vegetation pattern structures, and eventually vegetation coverage tends to be uniform. Moreover, we found that there exists an optimal temperature where the spot vegetation pattern structure remains stable. Furthermore, the increase in carbon dioxide concentration induces vegetation pattern transition. Based on four climate change scenarios of the Coupled Model Intercomparison Project Phase 6 (CMIP6), we used the power law range (PLR) to predict the optimal scenario for the sustainable development of the vegetation ecosystem in Altay Prefecture.

阿勒泰地区是中国西北部典型的干旱地区,自 20 世纪 80 年代以来经历了从暖干型向暖湿型的气候转变,并引起了广泛关注。然而,气候变化对该地区植被分布的影响尚不明确。本文提出了一个气候-植被系统的反应-扩散模型,以研究气候变化(降水、温度和二氧化碳浓度)对阿勒泰地区植被格局的影响。研究结果表明,阿勒泰地区植被生长趋势在 1985 年至 2010 年间逐渐改善。在当前气候条件下,降水量的增加导致植被格局结构发生变化,最终植被覆盖趋于均匀。此外,我们还发现存在一个最佳温度,在该温度下,点状植被模式结构保持稳定。此外,二氧化碳浓度的增加也会引起植被格局的转变。基于耦合模式相互比较项目第六阶段(CMIP6)的四种气候变化情景,我们利用幂律范围(PLR)预测了阿勒泰地区植被生态系统可持续发展的最佳情景。
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引用次数: 0
Effects of vaccination on the two-strain transmission dynamics of COVID-19: Dougherty County, Georgia, USA, as a case study. 疫苗接种对COVID-19两株传播动态的影响:以美国乔治亚州多尔蒂县为例
Pub Date : 2023-12-15 DOI: 10.1093/imammb/dqad007
Buddhi Pantha, Jemal Mohammed-Awel, Naveen K Vaidya

The emergence of multiple strains of SARS-COV-2 has made it complicated to predict and control the COVID-19 pandemic. Although some vaccines have been effective in reducing the severity of the disease, these vaccines are designed for a specific strain of the virus and are usually less effective for other strains. In addition, the waning of vaccine-induced immunity, reinfection of recovered people, and incomplete vaccination are challenging to the vaccination program. In this study, we developed a detailed model to describe the multi-strain transmission dynamics of COVID-19 under vaccination. We implemented our model to examine the impact of inter-strain transmission competition under vaccination on the critical outbreak indicators: hospitalized cases, undiagnosed cases, basic reproduction numbers, and the overtake-time by a new strain to the existing strain. In particular, our results on the dependence of the overtake-time on vaccination rates, progression-to-infectious rate, and relative transmission rates provide helpful information for managing a pandemic with circulating two strains. Furthermore, our results suggest that a reduction in the relative transmission rates and a decrease in vaccination dropout rates or an increase in vaccination rates help keep the reproduction number of both strains below unity and keep the number of hospitalized cases and undiagnosed cases at their lowest levels. Moreover, our analysis shows that the second and booster-dose vaccinations are useful for further reducing the reproduction number.

多种SARS-COV-2毒株的出现,给COVID-19大流行的预测和控制带来了困难。虽然有些疫苗在降低疾病严重程度方面有效,但这些疫苗是针对特定病毒株设计的,通常对其他病毒株效果较差。此外,疫苗引起的免疫力下降、康复者的再感染以及疫苗接种不完全都是疫苗接种计划面临的挑战。在这项研究中,我们建立了一个详细的模型来描述疫苗接种下COVID-19的多株传播动力学。我们实施了我们的模型来检验疫苗接种下菌株间传播竞争对关键暴发指标的影响:住院病例、未诊断病例、基本繁殖数和新菌株对现有菌株的超越时间。特别是,我们的研究结果表明,疫苗接种率、进展到传染率和相对传播率对接管时间的依赖性为管理两种病毒流行的大流行提供了有用的信息。此外,我们的研究结果表明,相对传播率的降低和疫苗辍接率的降低或疫苗接种率的增加有助于使两种菌株的繁殖数量保持在统一以下,并使住院病例和未确诊病例数保持在最低水平。此外,我们的分析表明,第二剂和加强剂疫苗对进一步减少繁殖数量是有用的。
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引用次数: 0
Which airways should we treat? Structure-function relationships and estimation of the singular input modes from the forward model alone. 我们应该治疗哪种呼吸道?结构-函数关系以及仅从正向模型对奇异输入模式的估计。
Pub Date : 2023-12-15 DOI: 10.1093/imammb/dqad006
Graham M Donovan

Structure-function relationships occur throughout the sciences. Motivated by optimization of such systems, we develop a framework for estimating the input modes from the singular value decomposition from the action of the forward operator alone. These can then be used to determine the input (structure) changes, which induce the largest output (function) changes. The accuracy of the estimate is determined by reference to the method of snapshots. The proposed method is demonstrated on several example problems, and finally used to approximate the optimal airway treatment set for a problem in respiratory physiology.

结构-功能关系贯穿于整个科学领域。受此类系统优化的启发,我们开发了一个框架,用于从单独的前向算子的动作的奇异值分解中估计输入模式。然后,这些可以用于确定引起最大输出(函数)变化的输入(结构)变化。估计的准确性是通过参考快照方法来确定的。所提出的方法在几个示例问题上进行了演示,并最终用于近似呼吸生理学问题的最佳气道治疗集。
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引用次数: 0
Pattern formation and travelling waves in a multiphase moving boundary model of tumour growth. 肿瘤生长多相移动边界模型的模式形成和行波。
Pub Date : 2023-12-15 DOI: 10.1093/imammb/dqad008
Jacob M Jepson, Reuben D O'Dea, John Billingham, Nabil T Fadai

We employ the multiphase, moving boundary model of Byrne et al. (2003, Appl. Math. Lett., 16, 567-573) that describes the evolution of a motile, viscous tumour cell phase and an inviscid extracellular liquid phase. This model comprises two partial differential equations that govern the cell volume fraction and the cell velocity, together with a moving boundary condition for the tumour edge, and here we characterize and analyse its travelling-wave and pattern-forming behaviour. Numerical simulations of the model indicate that patterned solutions can be obtained, which correspond to multiple regions of high cell density separated by regions of low cell density. In other parameter regimes, solutions of the model can develop into a forward- or backward-moving travelling wave, corresponding to tumour growth or extinction, respectively. A travelling-wave analysis allows us to find the corresponding wave speed, as well as criteria for the growth or extinction of the tumour. Furthermore, a stability analysis of these travelling-wave solutions provides us with criteria for the occurrence of patterned solutions. Finally, we discuss how the initial cell distribution, as well as parameters related to cellular motion and cell-liquid drag, control the qualitative features of patterned solutions.

我们采用了[5]的多相移动边界模型,该模型描述了一个移动的、粘性的肿瘤细胞期和一个不粘性的细胞外液相的演变。该模型包括两个控制细胞体积分数和细胞速度的偏微分方程,以及肿瘤边缘的移动边界条件,在这里我们描述和分析了其行波和模式形成行为。数值模拟结果表明,该模型可以得到图形化的解,该解对应于由低细胞密度区域隔开的多个高细胞密度区域。在其他参数条件下,模型的解可以发展成向前或向后移动的行波,分别对应于肿瘤的生长或消失。行波分析使我们能够找到相应的波速,以及肿瘤生长或消失的标准。此外,对这些行波解的稳定性分析为我们提供了出现图案解的判据。最后,我们讨论了初始细胞分布,以及与细胞运动和细胞-液阻力相关的参数,如何控制图案溶液的定性特征。
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引用次数: 0
Lumped parameter models for two-ventricle and healthy and failing extracardiac Fontan circulations 双心室、健康和衰竭心外循环的集总参数模型
Pub Date : 2021-09-01 DOI: 10.1093/imammb/dqab012
Matthew G Doyle;Marina Chugunova;S Lucy Roche;James P Keener
Fontan circulations are surgical strategies to treat infants born with single ventricle physiology. Clinical and mathematical definitions of Fontan failure are lacking, and understanding is needed of parameters indicative of declining physiologies. Our objective is to develop lumped parameter models of two-ventricle and single-ventricle circulations. These models, their mathematical formulations and a proof of existence of periodic solutions are presented. Sensitivity analyses are performed to identify key parameters. Systemic venous and systolic left ventricular compliances and systemic capillary and pulmonary venous resistances are identified as key parameters. Our models serve as a framework to study the differences between two-ventricle and single-ventricle physiologies and healthy and failing Fontan circulations.
Fontan循环是治疗出生时具有单心室生理学的婴儿的外科策略。Fontan衰竭缺乏临床和数学定义,需要了解指示生理机能下降的参数。我们的目标是建立双心室和单心室循环的集中参数模型。给出了这些模型、它们的数学公式以及周期解存在性的证明。进行敏感性分析以确定关键参数。系统静脉和收缩左心室顺应性以及系统毛细血管和肺静脉阻力被确定为关键参数。我们的模型作为研究双心室和单心室生理学与健康和衰竭Fontan循环之间差异的框架。
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引用次数: 1
Synchronization in epidemic growth and the impossibility of selective containment 流行病增长的同步性和选择性遏制的不可能性
Pub Date : 2021-09-01 DOI: 10.1093/imammb/dqab013
Jan C Budich;Emil J Bergholtz
Containment, aiming to prevent the epidemic stage of community-spreading altogether, and mitigation, aiming to merely ‘flatten the curve’ of a wide-ranged outbreak, constitute two qualitatively different approaches to combating an epidemic through non-pharmaceutical interventions. Here, we study a simple model of epidemic dynamics separating the population into two groups, namely a low-risk group and a high-risk group, for which different strategies are pursued. Due to synchronization effects, we find that maintaining a slower epidemic growth behaviour for the high-risk group is unstable against any finite coupling between the two groups. More precisely, the density of infected individuals in the two groups qualitatively evolves very similarly, apart from a small time delay and an overall scaling factor quantifying the coupling between the groups. Hence, selective containment of the epidemic in a targeted (high-risk) group is practically impossible whenever the surrounding society implements a mitigated community-spreading. We relate our general findings to the ongoing COVID-19 pandemic.
旨在完全防止社区传播的流行病阶段的遏制和旨在仅仅“拉平”大范围疫情的缓解,构成了通过非药物干预对抗流行病的两种性质不同的方法。在这里,我们研究了一个简单的流行病动力学模型,将人群分为两组,即低风险组和高风险组,并采取不同的策略。由于同步效应,我们发现,对于两组之间的任何有限耦合,高危人群保持较慢的流行病增长行为都是不稳定的。更准确地说,除了一个小的时间延迟和量化两组之间耦合的总体比例因子外,两组中感染者的密度在质量上的演变非常相似。因此,只要周围社会采取缓解社区传播的措施,就不可能在有针对性的(高风险)群体中选择性地控制疫情。我们将我们的总体调查结果与正在进行的新冠肺炎大流行联系起来。
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引用次数: 0
Accurate numerical simulation of electrodiffusion and water movement in brain tissue 脑组织中电扩散和水运动的精确数值模拟
Pub Date : 2021-09-01 DOI: 10.1093/imammb/dqab016
Ada J Ellingsrud;Nicolas Boullé;Patrick E Farrell;Marie E Rognes
Mathematical modelling of ionic electrodiffusion and water movement is emerging as a powerful avenue of investigation to provide a new physiological insight into brain homeostasis. However, in order to provide solid answers and resolve controversies, the accuracy of the predictions is essential. Ionic electrodiffusion models typically comprise non-trivial systems of non-linear and highly coupled partial and ordinary differential equations that govern phenomena on disparate time scales. Here, we study numerical challenges related to approximating these systems. We consider a homogenized model for electrodiffusion and osmosis in brain tissue and present and evaluate different associated finite element-based splitting schemes in terms of their numerical properties, including accuracy, convergence and computational efficiency for both idealized scenarios and for the physiologically relevant setting of cortical spreading depression (CSD). We find that the schemes display optimal convergence rates in space for problems with smooth manufactured solutions. However, the physiological CSD setting is challenging: we find that the accurate computation of CSD wave characteristics (wave speed and wave width) requires a very fine spatial and fine temporal resolution.
离子电扩散和水运动的数学建模正在成为一种强有力的研究途径,为大脑内稳态提供了新的生理学见解。然而,为了提供可靠的答案和解决争议,预测的准确性至关重要。离子电扩散模型通常包括非线性和高度耦合的偏微分方程和常微分方程的非平凡系统,这些系统控制着不同时间尺度上的现象。在这里,我们研究与近似这些系统相关的数值挑战。我们考虑了脑组织中电扩散和渗透的均质模型,并根据其数值特性提出并评估了不同相关的基于有限元的分裂方案,包括理想化场景和皮层扩散抑制(CSD)生理相关设置的准确性、收敛性和计算效率。我们发现,对于具有光滑制造解的问题,这些方案在空间上显示出最优的收敛速率。然而,生理CSD设置具有挑战性:我们发现CSD波特征(波速和波宽)的精确计算需要非常精细的空间和时间分辨率。
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引用次数: 5
Diffusion of dermatological irritant in drying laundered cloth 皮肤刺激物在干洗布中的扩散
Pub Date : 2021-09-01 DOI: 10.1093/imammb/dqab014
P Broadbridge;B S Tilley
Sodium dodecyl sulphate (SDS), a commonly used laundry surfactant, has been known to cause some damage to epithelial cells in skin. Further, independent experiments have shown that a single laundry wash with rinsing leaves a residue of around 10% of the chemicals used in a wash cycle. A realistic nonlinear system of partial differential equations is developed for coupled water and solute transport through a drying porous medium when the solute has a mobile state (monomers) as well as an immobile state (micelles). An accurate finite difference scheme is developed and tested against known exact solutions of the nonlinear porous medium equation for transport of water and against known conservation laws. It shows that at the end of atmosphere-controlled stage 1 of drying when little water remains, the concentration of SDS near the drying surface, where it may contact skin, is commonly an order of magnitude higher than its initial value. The problem is exacerbated by successive regular wash cycles and by higher evaporation rates in electronic dryers. The numerical solutions show the partitioning between the two phases of SDS.
十二烷基硫酸钠(SDS)是一种常用的洗衣表面活性剂,已知会对皮肤上皮细胞造成一些损伤。此外,独立的实验表明,一次漂洗的衣物洗涤会留下洗涤循环中使用的化学品的约10%的残留物。当溶质具有流动状态(单体)和不动状态(胶束)时,为水和溶质在干燥多孔介质中的耦合传输建立了一个现实的非线性偏微分方程组。针对水输运非线性多孔介质方程的已知精确解和已知守恒定律,开发并测试了一种精确的有限差分格式。研究表明,在大气控制的干燥阶段1结束时,当残留的水很少时,干燥表面附近SDS的浓度通常比其初始值高一个数量级,SDS可能接触皮肤。连续的定期洗涤循环和电子干燥器中较高的蒸发率加剧了这个问题。数值解显示了SDS两相之间的划分。
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引用次数: 0
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Mathematical medicine and biology : a journal of the IMA
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