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The Role of NLRP3 Inflammasome in the Pathogenesis of Stevens-Johnson Syndrome/Toxic Epidermal Necrolysis. NLRP3 炎症球在史蒂文斯-约翰逊综合征/毒性表皮坏死溶解症发病机制中的作用
Pub Date : 2024-01-01 Epub Date: 2024-01-30 DOI: 10.18103/mra.v12i1.4939
Mallika Shekhar, Omer Iqbal, Adarsh Dharan, Hanin El-Khateeb, Kavya Jatavallabhula, Ping Bu, Charles Bouchard

Stevens Johnson Syndrome/Toxic Epidermal Necrolysis (SJS/TEN) are mainly drug-induced severe cutaneous adverse reactions with increased mortality. It also involves the eyes causing ocular surface disease leading to visual impairment and blindness. The role of NLRP3 Inflammasome in causing ocular surface disease and keratinocyte apoptosis is not fully explored. This study is focused on determining the role of NLRP3 Inflammasome in the pathogenesis of Stevens Johnson Syndrome/Toxic Epidermal Necrolysis. The NLRP3 Inflammasome plays a crucial role in the pathogenesis of Stevens Johnson Syndrome/Toxic Epidermal Necrolysis and may correlate with the degree of severity of skin detachment and ocular surface disease. This study looked at the expression of the NLRP3 Inflammasome in the skin of patients with biopsy confirm Stevens Johnson Syndrome/Toxic Epidermal Necrolysis compared to the lichen planus and normal controls by immunohistochemistry as well as observing the mitochondrial function of platelets challenged with plasma from patients with Stevens Johnson Syndrome/Toxic Epidermal Necrolysis and Normal Human Plasma using Agilent Seahorse XF Analyzer. Under a current, Loyola IRB approved protocol, 12 collected and archived unstained slides of skin and blood plasma samples from patients with biopsy confirmed Stevens Johnson Syndrome/Toxic Epidermal Necrolysis was used for this study. Immunohistochemical analysis was performed using anti-NLRP3 antibodies followed by imaging on a Delta Vision microscope. The precise roles of cytokines and chemokine receptors in severity of skin detachment has not been completely studied. The identification of the roles of NLRP3 in Stevens Johnson Syndrome/Toxic Epidermal Necrolysis would bridge the gaps in the basic understanding regarding the pathogenesis of this disease spectrum. NLRP3 Inflammasome is a potential therapeutic target and its inhibition by phytochemicals may be appropriate effective treatment strategies in the management of this condition.

史蒂文斯-约翰逊综合征/毒性表皮坏死溶解症(SJS/TEN)主要是由药物引起的严重皮肤不良反应,死亡率较高。它还会累及眼睛,引起眼表疾病,导致视力损伤和失明。NLRP3 炎症小体在引起眼表疾病和角质细胞凋亡中的作用尚未得到充分探讨。本研究的重点是确定 NLRP3 炎酶体在史蒂文斯-约翰逊综合征/毒性表皮坏死溶解症发病机制中的作用。NLRP3 炎症体在史蒂文斯-约翰逊综合征/毒性表皮坏死症的发病机制中起着至关重要的作用,可能与皮肤脱落和眼表疾病的严重程度相关。本研究通过免疫组化方法观察了活检证实的史蒂文斯-约翰逊综合征/毒性表皮坏死症患者皮肤中 NLRP3 炎症小体的表达情况,并与扁平苔藓和正常对照组进行了比较,还使用安捷伦海马 XF 分析仪观察了用史蒂文斯-约翰逊综合征/毒性表皮坏死症患者血浆和正常人血浆挑战血小板的线粒体功能。根据洛约拉研究所(Loyola IRB)批准的现行方案,本研究使用了从活检证实的史蒂文斯-约翰逊综合征/中毒性表皮坏死症患者身上采集并存档的 12 张未经染色的皮肤和血浆样本切片。使用抗 NLRP3 抗体进行免疫组化分析,然后在 Delta Vision 显微镜上成像。细胞因子和趋化因子受体在皮肤脱落严重程度中的确切作用尚未完全研究清楚。确定 NLRP3 在史蒂文斯-约翰逊综合征/毒性表皮坏死溶解症中的作用将弥补对该疾病谱发病机制的基本认识上的差距。NLRP3 炎症小体是一个潜在的治疗靶点,植物化学物质对它的抑制可能是治疗这种疾病的适当有效的治疗策略。
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引用次数: 0
Obstructive sleep apnea alters microRNA levels: Effects of continuous positive airway pressure. 阻塞性睡眠呼吸暂停会改变微RNA水平:持续气道正压的影响
Pub Date : 2024-01-01 DOI: 10.18103/mra.v12i1.4975
SarahRose Hall, Stephanie Samani, Amelia Churillo, Lisa Freeburg, Oren Cohen, Kavya Devarakonda, Samira Khan, Kurt G Barringhaus, Neomi Shah, Francis G Spinale

Background: Obstructive sleep apnea (OSA) has been linked to cytokine-mediated chronic inflammatory states. Continuous positive airway pressure (CPAP) is an established therapy for OSA, but its effects on inflammation remain unclear. A recent study from our group identified soluble cytokine receptors altered in OSA patients and modified by CPAP adherence. However, the upstream regulatory pathways responsible for these shifts in proinflammatory cascades with OSA and CPAP therapy remained unknown. Accordingly, this study mapped OSA and CPAP-modulated soluble cytokine receptors to specific microRNAs and then tested the hypothesis that OSA and CPAP adherence shift cytokine-related microRNA expression profiles.

Study design: Plasma samples were collected from patients with OSA (n=50) at baseline and approximately 90 days after CPAP initiation and compared to referent control subjects (n=10). Patients with OSA were further divided into cohorts defined by adherence vs nonadherence to CPAP therapy. The microRNAs that mapped to soluble cytokine receptors of interest were subjected to quantitative polymerase chain reaction.

Results: At baseline, increased hsa-miR-15a-5p, hsa-miR-15b-5p, hsa-miR-16-5p, hsa-miR-195-5p, hsa-miR-424-5p, hsa-miR-223-3p, and hsa-miR-223-5p were observed in patients with OSA compared to controls (p<0.05). In CPAP adherent patients (n=22), hsa-miR233-3p and hsa-miR233-5p decreased at follow-up (p<0.05) whereas there was no change in miR levels from baseline in non-adherent CPAP patients (n=28). The miRs hsa-miR233-3p and hsa-miR233-5p mapped to both proinflammatory and innate immunity activation; the inflammasome.

Conclusion: A specific set of microRNAs, including hsa-miR233-3p and hsa-miR233-5p, may serve as a marker of inflammatory responses in patients with OSA, and be used to assess attenuation of inflammasome activation by CPAP.

背景:阻塞性睡眠呼吸暂停(OSA阻塞性睡眠呼吸暂停(OSA)与细胞因子介导的慢性炎症状态有关。持续气道正压(CPAP)是一种治疗 OSA 的成熟疗法,但其对炎症的影响仍不清楚。我们小组最近的一项研究发现,OSA 患者体内的可溶性细胞因子受体发生了改变,并因坚持使用 CPAP 而改变。然而,导致 OSA 和 CPAP 治疗引起的促炎症级联转变的上游调节途径仍然未知。因此,本研究将 OSA 和 CPAP 调节的可溶性细胞因子受体映射到特定的 microRNA,然后检验了 OSA 和 CPAP 依赖性改变细胞因子相关 microRNA 表达谱的假设:研究设计:在基线和开始使用 CPAP 约 90 天后收集 OSA 患者(50 人)的血浆样本,并与参考对照组(10 人)进行比较。根据是否坚持使用 CPAP 治疗,OSA 患者被进一步划分为不同的组群。对映射到相关可溶性细胞因子受体的微RNA进行定量聚合酶链反应:结果:与对照组相比,观察到 OSA 患者的 hsa-miR-15a-5p、hsa-miR-15b-5p、hsa-miR-16-5p、hsa-miR-195-5p、hsa-miR-424-5p、hsa-miR-223-3p 和 hsa-miR-223-5p 基线增加(p):包括 hsa-miR233-3p 和 hsa-miR233-5p 在内的一组特定 microRNA 可作为 OSA 患者炎症反应的标记物,并可用于评估 CPAP 对炎症小体激活的抑制作用。
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引用次数: 0
Considerations on Design and Analysis of External Control in Pediatric Oncology. 儿科肿瘤学外部控制设计与分析的考虑因素。
Pub Date : 2024-01-01 Epub Date: 2024-03-04 DOI: 10.18103/mra.v12i1.5088
Jingjing Ye, Haitao Pan, Gregory Reaman, Satrajit Roychoudhury, Chengxing Lu, Lindsay A Renfro, Yuan Ji, Rong Liu, Ying Yuan, Weidong Zhang

Pediatric cancer consists of a diverse group of rare diseases. Due to limited patient populations, standard randomized and controlled trials are often infeasible. As a result, single-arm trials are common in pediatric oncology and the use of external controls is often desirable or necessary to help generate actionable evidence and contextualize trial results. In this paper, we illustrate unique features in pediatric oncology clinical trials and describe their impact on the use of external controls. Various types of relevant external control data sources are described in terms of their utility and drawbacks. Statistical methodologies and design implications with external control are discussed. Two recent case studies using external controls to support pediatric oncology drug development are described in detail.

儿童癌症由多种罕见疾病组成。由于患者人数有限,标准的随机对照试验往往不可行。因此,单臂试验在儿科肿瘤学中很常见,而使用外部对照往往是可取或必要的,以帮助产生可操作的证据并将试验结果具体化。在本文中,我们将说明儿科肿瘤临床试验的独特之处,并描述其对使用外部对照的影响。本文介绍了各类相关外部对照数据源的效用和缺点。还讨论了外部对照的统计方法和设计影响。详细介绍了最近两个使用外部对照支持儿科肿瘤药物开发的案例研究。
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引用次数: 0
Food Insecurity in the Rural South in the Wake of the COVID-19 Pandemic. COVID-19 大流行后南方农村地区的粮食不安全问题。
Pub Date : 2023-12-01 Epub Date: 2023-12-26 DOI: 10.18103/mra.v11i12.4593
Lorraine C Taylor, Seronda A Robinson, Irene A Doherty, Akeylah C Giles, Brooke E Bauer, William Pilkington

Food insecurity in rural communities in the Southern US continues to grow, especially in the wake of the COVID-19 pandemic. Understanding the characteristics of food-insecure individuals and families in this region is critical for developing creative strategies for eliminating this health disparity issue. A food insecurity survey was given to attendees at food-security events held in several counties in one Southern US state. A descriptive analysis of food insecurity in this region is presented, and recommendations for addressing food insecurity among underserved and disadvantaged populations are suggested.

美国南部农村社区的粮食不安全状况持续恶化,尤其是在 COVID-19 大流行之后。了解该地区粮食无保障个人和家庭的特征对于制定消除这一健康差异问题的创新战略至关重要。在美国南部一个州的几个县举行的食品安全活动中,向与会者发放了食品不安全调查问卷。报告对该地区的粮食不安全状况进行了描述性分析,并就如何解决服务不足和弱势群体的粮食不安全问题提出了建议。
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引用次数: 0
Did a small thermosensitive intron contribute to the temperate adaptation of Drosophila melanogaster? 一个小的热敏内含子是否有助于黑腹果蝇的温带适应?
Pub Date : 2023-11-01 DOI: 10.18103/mra.v11i11.4624
Isaac Edery

Drosophila melanogaster was first used for research in the early 1900's by scientists located in the northeastern corridor of the United States, gaining prominence with the establishment of the famous "fly room" by Thomas Hunt Morgan at Columbia University circa1908. Several reasons for using D. melanogaster in research are well known; easy and inexpensive to breed, short lifespan, amongst others. But why was this insect species flourishing in a temperate northeast region of the New World during the late 1800's when they originated in the tropical forests of sub-Saharan Africa millions of years ago? The purpose of this review is to provide an overview of the experimental underpinnings for a temperature sensitive mechanism that likely contributed to the rather unique ability of Drosophila melanogaster to successfully colonize temperate regions on a global scale. It also furnishes an interesting historical insight into how ancestral genetics serendipitously held the keys to the journey of D. melanogaster becoming such a popular research organism. While numerous papers have been published detailing different aspects of the work, this is the first comprehensive review. Herein, I discuss the discovery of a small thermosensitive intron in D. melanogaster (termed dmpi8) that controls midday siesta levels. Like many day-active animals, Drosophila exhibits a robust genetically based midday siesta that is protective in warm climates. Yet long bouts of daytime inactivity might be counterproductive in temperate climates, especially since daylength in these regions is shorter during the cooler months. Evidence discussed in this review strongly indicates that targeting of dmpi8 splicing efficiency by natural selection enhanced the ability of D. melanogaster to scale daytime sleep levels commensurate with a wide range of local climates. Surprisingly, dmpi8 splicing regulates midday siesta levels in trans by controlling the expression of a nearby anti-siesta gene called daywake. The "fortuitous" genetic arrangement of a thermosensitive intron in proximity to an anti-siesta gene might have contributed to the cosmopolitan nature of D. melanogaster and its historical journey in becoming a popular research organism.

20 世纪初,美国东北部走廊的科学家首次将黑腹果蝇用于研究,1908 年左右,哥伦比亚大学的托马斯-亨特-摩根(Thomas Hunt Morgan)建立了著名的 "蝇室",黑腹果蝇由此开始崭露头角。将黑腹蝇用于研究的几个原因众所周知:易于繁殖、成本低廉、寿命短等等。但是,为什么这种昆虫在数百万年前起源于撒哈拉以南非洲的热带森林,而在 19 世纪晚期却在新大陆东北部的温带地区繁衍生息呢?这篇综述的目的是概述温度敏感机制的实验基础,这种机制很可能促成了黑腹果蝇在全球范围内成功定居温带地区的独特能力。它还提供了一个有趣的历史洞察,让我们了解祖先的遗传学是如何偶然地掌握了黑腹果蝇成为如此受欢迎的研究生物的关键。虽然已经有许多论文详细介绍了这项工作的各个方面,但这是第一篇全面的综述。在本文中,我将讨论在黑腹蝇中发现的一个控制正午午睡水平的小型热敏感内含子(称为dmpi8)。与许多白天活动的动物一样,果蝇表现出一种基于基因的强健的午睡,在温暖的气候条件下具有保护作用。然而,在温带气候条件下,长时间的白天不活动可能会适得其反,尤其是因为这些地区在较凉爽的月份里昼长较短。本综述中讨论的证据有力地表明,自然选择对dmpi8剪接效率的靶向作用增强了黑腹蝇在广泛的当地气候条件下调节白天睡眠水平的能力。令人惊讶的是,dmpi8的剪接通过控制附近一个名为 "daywake "的抗午睡基因的表达,反式调节了中午的午睡水平。热敏感内含子与抗午睡基因邻近的 "偶然 "基因排列,可能有助于黑腹蝇的世界性及其成为流行研究生物的历史进程。
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引用次数: 0
The Challenges to Advancing Induced Pluripotent Stem Cell-Dependent Cell Replacement Therapy. 推进依赖诱导多能干细胞的细胞替代疗法所面临的挑战。
Pub Date : 2023-11-01 Epub Date: 2023-11-29 DOI: 10.18103/mra.v11i11.4784
Alan B Moy, Anant Kamath, Sara Ternes, Jay Kamath

Induced pluripotent stem cells (iPSC) represent a potentially exciting regenerative-medicine cell therapy for several chronic conditions such as macular degeneration, soft tissue and orthopedic conditions, cardiopulmonary disease, cancer, neurodegenerative disorders and metabolic disorders. The field of iPSC therapeutics currently exists at an early stage of development. There are several important stakeholders that include academia, industry, regulatory agencies, financial institutions and patients who are committed to advance the field. Yet, unlike more established therapeutic modalities like small and large molecules, iPSC therapies pose significant unique challenges with respect to safety, potency, genetic stability, immunogenicity, tumorgenicity, cell reproducibility, scalability and engraftment. The aim of this review article is to highlight the unique technical challenges that need to be addressed before iPSC technology can be fully realized as a cell replacement therapy. Additionally, this manuscript offers some potential solutions and identifies areas of focus that should be considered in order for the iPSC field to achieve its promise. The scope of this article covers the following areas: (1) the impact of different iPSC reprogramming methods on immunogenicity and tumorigenicity; (2) the effect of genetic instability on cell reproducibility and differentiation; (3) the role of growth factors and post-translational modification on differentiation and cell scalability; (4) the potential use of gene editing in improving iPSC differentiation; (5) the advantages and disadvantages between autologous and allogeneic cell therapy; (6) the regulatory considerations in developing a viable and reproducible cell product; and (7) the impact of local tissue inflammation on cell engraftment and cell viability.

诱导多能干细胞(iPSC)是一种潜在的再生医学细胞疗法,可治疗多种慢性疾病,如黄斑变性、软组织和骨科疾病、心肺疾病、癌症、神经退行性疾病和代谢性疾病。iPSC 疗法目前处于早期发展阶段。包括学术界、工业界、监管机构、金融机构和患者在内的多个重要利益相关者都致力于推动这一领域的发展。然而,与小分子和大分子等更成熟的治疗模式不同,iPSC 疗法在安全性、有效性、遗传稳定性、免疫原性、肿瘤遗传性、细胞可重复性、可扩展性和移植性等方面面临着巨大的独特挑战。这篇综述文章旨在强调在 iPSC 技术完全实现细胞替代疗法之前需要解决的独特技术挑战。此外,本文还提供了一些潜在的解决方案,并确定了 iPSC 领域实现其承诺所应考虑的重点领域。本文的研究范围包括以下几个方面:(1) 不同 iPSC 重编程方法对免疫原性和致瘤性的影响;(2) 遗传不稳定性对细胞可重复性和分化的影响;(3) 生长因子和翻译后修饰对分化和细胞可扩展性的作用;(4) 基因编辑在改善 iPSC 分化方面的潜在用途;(5) 自体细胞疗法和异体细胞疗法的优缺点;(6) 在开发可行且可重复的细胞产品方面的监管考虑因素;以及 (7) 局部组织炎症对细胞移植和细胞活力的影响。
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引用次数: 0
An Ultra-Brief Proxy Measure for Early Mental and Substance Use Disorders and Suicide Risk Case Detection at the Community and Household Level: An Efficient and Feasible Clinical and Population-level Service Needs Screening Tool. 在社区和家庭层面进行早期精神和药物使用障碍及自杀风险病例检测的超简易替代测量法:一种高效可行的临床和人群服务需求筛查工具。
Pub Date : 2023-10-01 Epub Date: 2024-01-11 DOI: 10.18103/mra.v11i10.4381
Melissa A Stockton, Ernesha Webb Mazinyo, Lungelwa Mlanjeni, Kwanda Nogemane, Nondumiso Ngcelwane, Annika C Sweetland, Cale Basaraba, Charl Bezuidenhout, Griffin Sansbury, Kathryn L Lovero, Maria Lídia Gouveia, Palmira Fortunato Dos Santos, Paulino Feliciano, Wilza Fumo, Antonio Suleman, Maria A Oquendo, Christoffel Grobler, Melanie M Wall, Phumza Nobatyi, Andrew Medina-Marino, Milton L Wainberg

Valid mental and substance use disorders and suicide risk screening tools are needed for community case finding of individuals who may not otherwise seek care. We evaluated the Proxy Mental Wellness Tool-3 (mwTool-3-proxy) a three-item screener that asks about the mental health of another adult, against a diagnostic gold standard in Mozambique and South Africa. The mwTool-3-proxy adapts the three items of the Mental Wellness Tool-3, developed in Mozambique using Mini International Neuropsychiatric Interview diagnoses as the criterion standard, regression modeling and expert consultation to determine the best three items for identifying any mental disorder. The Mental Wellness Tool-3 has been validated in South Africa, Spain and the United States, and is being validated in three countries in the Asia-Pacific and Israel. Pairs of adults in South Africa and Mozambique at primary and tertiary healthcare facilities were separately screened with the mwTool-3-proxy and diagnosed using the Mini International Neuropsychiatric Interview. We calculated the sensitivities and specificities for predicting any mental and/or substance use disorder and suicide risk among the proxy individual. We performed additional analyses restricted to respondents who were relatives of one another and who lived in the same household. The prevalence of any Mini International Neuropsychiatric Interview-diagnosed disorder among the 229 pairs in both countries was 35.6% (38.5% in Mozambique; 32.9% in South Africa). The pooled sensitivity of the mwTool-3-proxy for identifying any disorder among the proxy individual was 73.01 (95%CI: 65.5-79.65) - 70.24 (95%CI: 59.27-79.73) in Mozambique and 80.00 (95%CI 69.17-88.35) in South Africa. The mwTool-3-proxy is a culturally-relevant, ultra-brief valid measure that can improve mental and substance use disorders and suicide risk case detection with strong sensitivity at the community and household level and offer a means to efficiently and feasibly collect clinical and population-level service needs data.

社区需要有效的精神和药物使用障碍及自杀风险筛查工具来发现那些可能不会寻求治疗的人。我们在莫桑比克和南非对照诊断黄金标准,评估了 "代理心理健康工具-3"(mwTool-3-proxy)这一包含三个项目的筛查工具,以了解另一个成年人的心理健康状况。mwTool-3-proxy 采用了莫桑比克开发的 Mental Wellness Tool-3 的三个项目,以迷你国际神经精神病学访谈诊断为标准,通过回归建模和专家咨询来确定识别任何精神障碍的最佳三个项目。心理健康工具-3 已在南非、西班牙和美国得到验证,目前正在亚太地区的三个国家和以色列进行验证。在南非和莫桑比克的初级和三级医疗机构中,我们分别使用 mwTool-3 代理工具对两对成年人进行了筛查,并使用小型国际神经精神病学访谈进行了诊断。我们计算了预测任何精神和/或药物使用障碍以及代理个体自杀风险的敏感性和特异性。我们还进行了其他分析,仅限于互为亲属且居住在同一家庭的受访者。在这两个国家的 229 对受访者中,经迷你国际神经精神访谈确诊的任何精神障碍的患病率为 35.6%(莫桑比克为 38.5%;南非为 32.9%)。在莫桑比克,mwTool-3-proxy 对确定代理个体是否患有任何疾病的汇总灵敏度为 73.01(95%CI:65.5-79.65)--70.24(95%CI:59.27-79.73),在南非为 80.00(95%CI:69.17-88.35)。mwTool-3-proxy 是一种与文化相关的超简短有效测量方法,可以在社区和家庭层面提高精神和药物使用障碍以及自杀风险病例检测的灵敏度,并为高效、可行地收集临床和人口层面的服务需求数据提供了一种手段。
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引用次数: 0
Invited Expert Opinion- Bioinformatic and Limitation Directives to Help Adopt Genetic Addiction Risk Screening and Identify Preaddictive Reward Dysregulation: Required Analytic Evidence to Induce Dopamine Homeostatsis. 受邀专家意见-生物信息学和限制指令,以帮助采用遗传成瘾风险筛查和识别预先奖励失调:诱导多巴胺稳态所需的分析证据。
Pub Date : 2023-09-14 DOI: 10.18103/mra.v11i8.4211
Kenneth Blum, Mark S Gold, Jean Lud Cadet, Marjorie C Gondre-Lewis, Thomas McLaughlin, Eric R Braverman, Igor Elman, B Paul Carney, Rene Cortese, Tomilowo Abijo, Debasis Bagchi, John Giordano, Catherine A Dennen, David Baron, Panayotis K Thanos, Diwanshu Soni, Milan T Makale, Miles Makale, Kevin T Murphy, Nicole Jafari, Keerthy Sunder, Foojan Zeine, Mauro Ceccanti, Abdalla Bowirrat, Rajendra D Badgaiyan
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引用次数: 0
Personalized Immunotherapy of Patients: Defining by Single-cell RNA-seq with Artificial Intelligence. 患者的个性化免疫治疗:用人工智能通过单细胞RNA-seq进行定义。
Pub Date : 2023-08-01 Epub Date: 2023-08-30 DOI: 10.18103/mra.v11i8.4293
Biaoru Li

Immunotherapy, including immune cell therapy and targeted therapy, is gradually developed through the ongoing discovery of molecular compounds or immune cells. Choosing the best one or the best combination of target compounds and immune-cell therapy is a challenge for clinical scientists and clinicians. We have found variable efficacy individually after tumor-infiltrating lymphocyte (TIL) therapy, and now TILs have been discovered in a group of heterogeneous immune cells. To select the best immunotherapy for each patient, we started to study TIL genomics, including single-cell mRNA differential display from TIL published in 2007 and single-cell RNA-seq from TIL published in 2013, set up TIL quantitative network in 2015, researched machine-learning model for immune therapy in 2022. These manual reports single-cell RNA-seq data combined with machine learning to evaluate the optimal compounds and immune cells for individual patients. The machine-learning model, one of artificial intelligence, can estimate targeting genomic variance from single-cell RNA-seq so that they can cover thirteen kinds of immune cell therapies and ongoing FDA-approved targeted therapies such as PD1 inhibitors, PDL1 inhibitors, and CTLA4 inhibitors, as well as other different treatments such as HDACI or DNMT1 inhibitors, FDA-approved drugs. Moreover, also cover Phase-1, Phase-2, Phase-3, and Phase-4 of clinical trials, such as TIL, CAR T-cells, TCR T-cells. Single-cell RNA-seq with an Artificial intelligence estimation system is much better than our published models from microarrays or just cell therapy. The medical goal is to address three issues in clinical immunotherapy: the increase of efficacy; the decrease of adverse effects and the decrease of the cost in clinical applications.

免疫治疗,包括免疫细胞治疗和靶向治疗,是通过不断发现分子化合物或免疫细胞而逐渐发展起来的。选择最佳的一种或靶化合物与免疫细胞治疗的最佳组合对临床科学家和临床医生来说是一项挑战。我们发现,在肿瘤浸润性淋巴细胞(TIL)治疗后,个体疗效各不相同,现在在一组异质性免疫细胞中发现了TIL。为了为每位患者选择最佳的免疫疗法,我们开始研究TIL基因组学,包括2007年发表的TIL单细胞mRNA差异显示和2013年发表的TIL单细胞RNA-seq,2015年建立了TIL定量网络,2022年研究了免疫治疗的机器学习模型。这些手册报告了单细胞RNA-seq数据与机器学习相结合,以评估个体患者的最佳化合物和免疫细胞。机器学习模型是人工智能的一种,可以从单细胞RNA-seq中估计靶向基因组的差异,从而涵盖13种免疫细胞疗法和正在进行的FDA批准的靶向疗法,如PD1抑制剂、PDL1抑制剂和CTLA4抑制剂,以及其他不同的治疗方法,如HDACI或DNMT1抑制剂,FDA批准的药物。此外,还涵盖临床试验的1期、2期、3期和4期,如TIL、CAR T细胞、TCR T细胞。带有人工智能估计系统的单细胞RNA-seq比我们发表的微阵列或细胞治疗模型要好得多。医学目标是解决临床免疫治疗中的三个问题:提高疗效;临床应用中不良反应的减少和成本的降低。
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引用次数: 0
Ubiquitous Colonic Ileal Metaplasia Consistent with the Diagnosis of Crohn's Colitis among Indeterminate Colitis Cohorts. 在不确定性结肠炎队列中,普遍存在的结肠Ileal变性与克罗恩结肠炎的诊断一致。
Pub Date : 2023-08-01 Epub Date: 2023-07-27 DOI: 10.18103/mra.v11i8.4188
William A Breaux, Maya A Bragg, Amosy E M'Koma

Background: Inadequate differentiated diagnostic features of predominantly colonic inflammatory bowel diseases i.e., ulcerative colitis and Crohn's colitis, may lead to inexact diagnosis of "indeterminate colitis". About 15% of indeterminate colitis patients are diagnosed at colonoscopy, in colonic biopsies, and/or at colectomy. Managing outcomes of indeterminate colitis, given its unpredictable clinical presentation, depends on future diagnosis of colitis, Crohn's colitis or ulcerative colitis.

Objective: Overview the diagnostic efficacy of ectopic colonic ileal metaplasia and human α-defens 5 (DEFA5 alias HD5) for accurate delineation of indeterminate colitis into authentic Crohn's colitis and/ or ulcerative colitis.

Design: We describe a targeted protein for potentially differentiating indeterminate colitis into an accurate clinical subtype diagnosis of inflammatory bowel diseases i.e., ulcerative colitis and Crohn's colitis.

Patients: Twenty-one patients with the clinically inexact diagnosis of indeterminate colitis were followed, reassessed and data analyzed.

Main outcome measures: We observed that (i) some patients had their original diagnosis changed from indeterminate colitis to either ulcerative colitis or Crohn's colitis; and (ii) human α-defensin 5 is aberrantly overexpressed in Crohn's colitis.

Results: Fifteen of the twenty-one (71.4%) patients with indeterminate colitis had their inconclusive diagnosis changed; nine patients changed to ulcerative colitis and six to Crohn's colitis. In human colon surgical samples, Human α-defensin-5 was significantly upregulated in Crohn's colitis. In addition, Human α-defensin 5 processing enzyme, matrix metalloptotease-7 was inversely expressed compared to Human α- Defensin 5.

Limitation: Due to the sequence homology of the α-defensin class of proteins, preceding efforts to raise antibodies (Abs) against DEFA5 have limitations to produce adequate specificity. The Abs used in previous assays recognizes the α-defensins, active α-defensins 5 and inactive pro- α-defensins 5. Monoclonal antibodies (mAbs) to determine specificity and sensitivity of α-defensins 5, which is diagnostic of CC disease, and NOT other α-defensins is the limitation to overcome.

Conclusion: It is feasible to differentiate ulcerative colitis from Crohn's colitis among patients with inexact diagnosis of indeterminate colitis using Human α-defensin 5 as a molecular biosignature delineator.

背景:以结肠炎症性肠病为主的疾病,即溃疡性结肠炎和克罗恩氏结肠炎的鉴别诊断特征不足,可能导致“不确定结肠炎”的诊断不准确。大约15%的不确定结肠炎患者在结肠镜检查、结肠活检和/或结肠切除术中被诊断。鉴于其不可预测的临床表现,不确定结肠炎的治疗结果取决于未来对结肠炎、克罗恩氏结肠炎或溃疡性结肠炎的诊断。目的:综述异位结肠回肠化生和人α-防御素5(DEFA5别名HD5)在准确区分不确定结肠炎为真正的克罗恩氏结肠炎和/或溃疡性结肠炎方面的诊断效果。设计:我们描述了一种靶向蛋白,用于潜在地将不确定的结肠炎区分为炎症性肠病(即溃疡性结肠炎和克罗恩氏结肠炎)的准确临床亚型诊断。患者:对21例临床诊断不准确的不确定结肠炎患者进行随访、重新评估和数据分析。主要结果指标:我们观察到(i)一些患者的原始诊断从不确定性结肠炎变为溃疡性结肠炎或克罗恩氏结肠炎;和(ii)人α-防御素5在克罗恩结肠炎中异常过表达。结果:21例不确定型结肠炎患者中,15例(71.4%)的不确定诊断发生了变化;9例为溃疡性结肠炎,6例为克罗恩氏结肠炎。在人类结肠手术样本中,人类α-防御素-5在克罗恩结肠炎中显著上调。此外,与人类α-防御素5相比,人类α-国防素5加工酶基质金属蛋白酶-7表达相反。限制:由于α-防御蛋白类蛋白质的序列同源性,先前针对DEFA5产生抗体(Abs)的努力在产生足够的特异性方面存在限制。先前测定中使用的Abs识别α-防御素、活性α-防御蛋白5和非活性前α-防御肽5。单克隆抗体(mAbs)确定α-防御素5的特异性和敏感性是需要克服的局限性,α-防御蛋白5是CC疾病的诊断,而不是其他α-防御肽。结论:用人α-防御素5作为分子生物学标记物,在诊断不确定结肠炎的患者中区分溃疡性结肠炎和克罗恩氏结肠炎是可行的。
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