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The Genetic Odyssey of Axolotl Regeneration: Insights and Innovations. Axolotl 再生的基因奥德赛:洞察与创新。
Pub Date : 2024-12-12 DOI: 10.1387/ijdb.240111yl
Muhammad Faisal, Afshan Mehreen, Deli Hays, Faiza Yaseen, Yujun Liang

The axolotl, a legendary creature with the potential to regenerate complex body parts, is positioned as a powerful model organism due to its extraordinary regenerative capabilities. Axolotl can undergo successful regeneration of multiple structures, providing us with the opportunity to understand the factors that exhibit altered activity between regenerative and non-regenerative animals. This comprehensive review will explore the mysteries of axolotl regeneration, from the initial cellular triggers to the intricate signaling cascades that guide this complex process. We will delve deeply into the multifaceted interplay of genes and factors, highlighting the key role of signaling pathways and the influence of epigenetic modifications (such as DNA methylation, histone modification, and miRNA regulation) during regeneration. Furthermore, we will discuss how axolotls defy the odds by showing remarkable resistance to cancer, offering insights into potential therapeutic strategies. However, that is not the end; we will also highlight how age might affect the regenerative power of this creature. We hope this review will help navigate the awe-inspiring realm of axolotl regeneration, advance our understanding of regenerative biology, and chart pathways for future investigations aimed at uncovering new therapeutic approaches.

蝾螈是一种传说中的生物,具有再生复杂身体部位的潜力,由于其非凡的再生能力,它被定位为一种强大的模式生物。蝾螈可以成功地进行多种结构的再生,这为我们提供了了解再生动物和非再生动物之间表现出不同活动的因素的机会。这篇全面的综述将探索美西螈再生的奥秘,从最初的细胞触发到引导这一复杂过程的复杂信号级联。我们将深入研究基因和因素的多方面相互作用,强调信号通路的关键作用和表观遗传修饰(如DNA甲基化、组蛋白修饰和miRNA调节)在再生过程中的影响。此外,我们将讨论蝾螈如何通过表现出非凡的抗癌能力来克服这种可能性,为潜在的治疗策略提供见解。然而,这还不是结束;我们还将强调年龄如何影响这种生物的再生能力。我们希望这篇综述将有助于引导令人敬畏的美西螈再生领域,推进我们对再生生物学的理解,并为未来旨在发现新的治疗方法的研究指明道路。
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引用次数: 0
Fibroblast Growth Factor 8 enhances the chondrogenesis of trunk neural crest cells: a possible gene regulatory network. 成纤维细胞生长因子8促进主干神经嵴细胞的软骨形成:一个可能的基因调控网络。
Pub Date : 2024-12-12 DOI: 10.1387/ijdb.240189gc
Raphaella Josino, Saloe Bispo, Bernardo Bonilauri, Bruno Dallagiovanna, Giordano Wosgrau Calloni

The neural crest (NC) is an embryonic cell population with high migratory capacity. It contributes to forming several organs and tissues, such as the craniofacial skeleton and the peripheral nervous system of vertebrates. Both pre-migratory and post-migratory NC cells are plastic, adopting multiple differentiation paths by responding to different inductive environmental signals. Cephalic neural crest cells (CNCCs) give rise to most of the cartilage and bone tissues in the head. On the other hand, the mesenchymal potential of trunk neural crest cells (TNCCs) is sparsely detected in some animal groups. The mesenchymal potential of TNCCs can be unveiled through specific environmental conditions of NC cultures. In this study, we present evidence that FGF8 treatment can foster increased chondrogenic differentiation of TNCCs, particularly during treatment at the migratory stage. Additionally, we conducted a transcriptomic analysis of TNCCs in the post-migratory stage, noting that exogenous FGF8 signaling can sustain multipotent status and, possibly, at the same time, a pro-cartilage regulatory gene network. Our results provide a more comprehensive understanding of the mechanisms underlying chondrogenic differentiation from TNCCs.

神经嵴(NC)是一种具有高度迁移能力的胚胎细胞群。它有助于形成几个器官和组织,如颅面骨骼和脊椎动物的周围神经系统。迁移前和迁移后的NC细胞都具有可塑性,通过响应不同的诱导环境信号而采取多种分化路径。头神经嵴细胞(CNCCs)产生了头部的大部分软骨和骨组织。另一方面,干神经嵴细胞(tncc)的间充质电位在一些动物群体中很少检测到。tncc的间充质潜能可以通过特定的NC培养环境条件来揭示。在这项研究中,我们提出证据表明,FGF8治疗可以促进tncc的软骨分化,特别是在迁移阶段的治疗期间。此外,我们对tncc的迁移后阶段进行了转录组学分析,注意到外源性FGF8信号可以维持多能状态,并且可能同时维持一个促软骨调节基因网络。我们的研究结果为tncc的软骨分化机制提供了更全面的理解。
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引用次数: 0
Cell number regulation occurs during the pre-gastrulation period of postimplantation development in double chimeric mouse embryos. 在双嵌合小鼠胚胎着床后发育的孕前期,细胞数量会发生调节。
Pub Date : 2024-12-12 DOI: 10.1387/ijdb.240138mm
Katarzyna Krawczyk, Magdalena Oślislok, Anna Gałązkiewicz, Marcin Szpila, Marek Maleszewski

Aggregates of two mouse embryos produce viable offspring of normal size, indicating that there are mechanisms in the embryo that can downregulate their size to the size of the corresponding normal (single) embryos. Very little is known about the mechanisms controlling compensation for increased preimplantation size. Also, it is still elusive when exactly during development chimeric embryos regulate their size. Here, we determined the exact period of size regulation in chimeras. Using a chimeric embryo produced by aggregating two 8-cell stage embryos, we revealed that size regulation initiates shortly after implantation (E5.5) and ends with the start of gastrulation (E7.5). Importantly, processes that regulate cell number in chimeric embryos do not disturb morphogenesis, so that the formation of the proamniotic cavity occurs in parallel with size regulation.

两个小鼠胚胎的聚集产生正常大小的可存活后代,表明胚胎中存在下调其大小到相应的正常(单个)胚胎大小的机制。我们对植入前尺寸增加的补偿机制知之甚少。此外,嵌合胚胎在发育过程中究竟何时调节其大小仍然是难以捉摸的。在这里,我们确定了嵌合体大小调节的确切时期。利用两个8细胞期胚胎聚集产生的嵌合胚胎,我们发现大小调节在着床后不久开始(E5.5),并在原肠胚形成开始时结束(E7.5)。重要的是,嵌合胚胎中调节细胞数量的过程不会干扰形态发生,因此羊膜前腔的形成与大小调节同时发生。
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引用次数: 0
Knock-in of a 3' UTR Stop Cassette into the Wnt4 locus increases mRNA expression and leads to ovarian cyst formation. 敲入 Wnt4 基因座的 3' UTR 终止盒可增加 mRNA 的表达并导致卵巢囊肿的形成。
Pub Date : 2024-11-04 DOI: 10.1387/ijdb.230211na
Nsrein Ali, Qi Xu, Renata Prunskaite-Hyyryläinen, Jingdong Shan, Seppo J Vainio

Wnt4 signaling is critical for mammalian female sex determination, in female reproductive organ development, in follicular and oocyte maturation, and in steroid hormone production. When Wnt4 function is impaired, female embryos undergo partial female to male sex-reversal. This phenotype is associated with the expression of a set of somatic genes that are typical for the male differentiation pathways such as those of the Leydig cells. Given the roles of the 3`untranslated region (3`UTR) in control of gene expression, we addressed whether a knock-in of a stop cassette to 3`END of the Wnt4 gene would impact female reproductive system development or function. The 3`UTRstop cassette indeed affected Wnt4 gene expression in vivo so that the respective mRNA was upregulated in the ovaries of a three month-old female. The homozygous Wnt4 3`UTRstop mice were noted to be leaner than their wild type (WT) littermate controls. Analysis of the ovarian follicular count at the age of three months revealed increased pre-antral but reduced ovarian corpus luteum follicular counts. Furthermore, two out of five of the homozygous female Wnt4 3`UTRstop mice had ovarian cysts, not noted in WT controls. RT-qPCR and in situ hybridization analysis depicted changes in the expression of a panel of genes which encode enzymes that mediate the synthesis of female steroid hormones or their receptors due to the Wnt4 3`UTRstop knock-in. Thus, female mice which had the homozygous construct exhibited elevated ovarian Wnt4 mRNA expression and the corresponding knock-in was associated with changes in ovarian development and folliculogenesis. Our data reinforce the conclusion that deregulated Wnt4 expression impacts female sex organogenesis, ovary development and function, and that the Wnt4 3`UTRstop knock-in mouse provides a model to explore in more detail the roles of Wnt4 signaling in the process.

Wnt4 信号对哺乳动物的雌性性别决定、雌性生殖器官发育、卵泡和卵母细胞成熟以及类固醇激素分泌至关重要。当 Wnt4 功能受损时,雌性胚胎会发生部分雌性到雄性的性别逆转。这种表型与一系列体细胞基因的表达有关,这些基因是典型的雄性分化途径,如Leydig细胞的基因。鉴于3`非翻译区(3`UTR)在控制基因表达方面的作用,我们研究了在Wnt4基因的3`END敲入终止盒是否会影响女性生殖系统的发育或功能。3`UTR终止盒确实影响了Wnt4基因在体内的表达,从而使相应的mRNA在三个月大的雌性卵巢中上调。同卵Wnt4 3`UTRstop小鼠比野生型(WT)同卵对照小鼠瘦小。对三个月大的卵巢卵泡数的分析表明,卵巢前黄体卵泡数增加,但卵巢黄体卵泡数减少。此外,在五只同源Wnt4 3`UTRstop雌性小鼠中,有两只出现了卵巢囊肿,而WT对照组则没有这种现象。RT-qPCR 和原位杂交分析显示,由于 Wnt4 3`UTRstop 基因敲入,一组编码介导雌性类固醇激素或其受体合成的酶的基因的表达发生了变化。因此,同源构建的雌性小鼠卵巢Wnt4 mRNA表达升高,相应的基因敲入与卵巢发育和卵泡生成的变化有关。我们的数据进一步证实了Wnt4表达失调会影响雌性器官的发生、卵巢的发育和功能,而Wnt4 3`UTRstop基因敲入小鼠为更详细地探讨Wnt4信号在这一过程中的作用提供了一个模型。
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引用次数: 0
Epigenetic and transcriptional regulation of neuron phenotype. 神经元表型的表观遗传和转录调控。
Pub Date : 2024-08-21 DOI: 10.1387/ijdb.230204ka
Kaia Achim

Understanding the structure and function of cells is central to cell biology and physiology. The ability to control cell function may benefit biomedicine, such as cell-replacement therapy or regeneration. If structure defines function and cells are composed of water, lipids, small metabolites, nucleic acids, and proteins, of which the latter are largely encoded by the DNA present in the same cell, then one may assume that the cell types and variation in cellular phenotypes are shaped by differential gene expression. Cells of the same cell type maintain a similar composition. In this review, I will discuss the epigenetic and transcription regulation mechanisms guiding cell fate- specific gene expression in developing neural cells. Differentiation involves processes of cell-fate selection, commitment and maturation, which are not necessarily coupled.

了解细胞的结构和功能是细胞生物学和生理学的核心。控制细胞功能的能力可能有益于生物医学,如细胞替代疗法或再生。如果说结构决定功能,细胞由水、脂质、小分子代谢物、核酸和蛋白质组成,而后者主要由存在于同一细胞中的 DNA 编码,那么我们可以认为,细胞类型和细胞表型的变化是由不同的基因表达形成的。同一细胞类型的细胞保持着相似的组成。在这篇综述中,我将讨论在发育中的神经细胞中引导细胞命运特异性基因表达的表观遗传和转录调控机制。分化涉及细胞命运选择、承诺和成熟过程,这些过程并不一定相互关联。
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引用次数: 0
Histological characterisation of the horn bud region in 58 day old bovine fetuses. 58 天牛胎儿角芽区的组织学特征。
Pub Date : 2024-08-14 DOI: 10.1387/ijdb.240040ja
Johanna E Aldersey, Tong Chen, Kiro Petrovski, John L Williams, Cynthia D K Bottema

The presence of horns in domestic ruminants, such as cattle, sheep and goats, has financial and welfare implications. The genetic interactions that lead to horn development are not known. Hornless, or polled, cattle occur naturally. The known causative DNA variants (Celtic, Friesian, Mongolian and Guarani) are in intergenic regions on bovine chromosome 1, but their functions are not known. It is thought that horns may be derived from cranial neural crest stem cells and the POLLED variants disrupt the migration or proliferation of these cells. Relaxin family peptide receptor 2 (RXFP2) is more highly expressed in developing horns in cattle compared to nearby skin and has been shown to play a role in horn development in sheep. However, the role of RXFP2 in horn formation is not understood. Histological analyses of cranial tissues from homozygous horned and polled cattle fetuses at day 58 of development was carried out to determine the differences in the structure of the horn bud region. Condensed cells were only observed in the horn bud mesenchyme of horned fetuses and could be the progenitor horn cells. The distribution of neural crest markers (SOX10 and NGFR) and RXFP2 between horned and polled tissues by immunohistochemistry was also analysed. However, SOX10 and NGFR were not detected in the condensed cells, and therefore, these cells are either not derived from the neural crest, or have differentiated and no longer express neural crest markers. SOX10 and NGFR were detected in the peripheral nerves, while RXFP2 was detected in peripheral nerves and in the horn bud epidermis. Previous research has shown that RXFP2 variants are associated with horn phenotypes in cattle an sheep. Therefore, the RXFP2 variants may affect the development of the epidermis or peripheral nerves in the horn bud.

牛、绵羊和山羊等家养反刍动物长角对经济和福利都有影响。导致角发育的基因相互作用尚不清楚。无角牛或花粉牛是自然出现的。已知的致病 DNA 变体(凯尔特、弗里斯兰、蒙古和瓜拉尼)位于牛 1 号染色体的基因间区域,但其功能尚不清楚。据认为,牛角可能来自颅神经嵴干细胞,而 POLLED 变异会破坏这些细胞的迁移或增殖。与附近的皮肤相比,松弛素家族肽受体 2(RXFP2)在牛角发育过程中的表达量更高,并且已被证明在绵羊的角发育过程中发挥作用。然而,RXFP2 在牛角形成过程中的作用尚不清楚。为了确定牛角芽区域结构的差异,我们对发育第 58 天的同卵牛角胎和花粉胎的颅骨组织进行了组织学分析。只有在有角胎儿的角芽间质中观察到凝集细胞,它们可能是原角细胞。免疫组化还分析了神经嵴标记物(SOX10和NGFR)和RXFP2在有角胎儿和花粉胎儿组织中的分布。然而,在凝聚细胞中没有检测到 SOX10 和 NGFR,因此这些细胞要么不是来自神经嵴,要么已经分化,不再表达神经嵴标记。在外周神经中检测到了 SOX10 和 NGFR,而在外周神经和角芽表皮中检测到了 RXFP2。先前的研究表明,RXFP2 变体与牛和羊的角表型有关。因此,RXFP2 变体可能会影响角芽表皮或周围神经的发育。
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引用次数: 0
Genetic targeting of lymphatic endothelial cells in mice: current strategies and future perspectives. 小鼠淋巴内皮细胞的基因靶向:当前策略与未来展望。
Pub Date : 2024-08-12 DOI: 10.1387/ijdb.230215tm
Hans Schoofs, Taija Mäkinen

Lymphatic vessels within different organs have diverse developmental origins, depend on different growth factor signaling pathways for their development and maintenance, and display notable tissue-specific adaptations that contribute to their roles in normal physiology and in various diseases. Functional studies on the lymphatic vasculature rely extensively on the use of mouse models that allow selective gene targeting of lymphatic endothelial cells (LECs). Here, we discuss LEC diversity and provide an overview of some of the commonly used LEC-specific inducible Cre lines and induction protocols, outlining essential experimental parameters and their implications. We describe optimized treatment regimens for embryonic, postnatal and adult LECs, efficiently targeting organs that are commonly studied in lymphatic vascular research, such as the mesentery and skin. We further highlight the anticipated outcomes and limitations associated with each induction scheme and mouse line. The proposed protocols serve as recommendations for laboratories initiating studies involving targeting of the lymphatic vasculature, and aim to promote uniformity in lineage tracing and functional studies within the lymphatic vascular field.

不同器官内的淋巴管具有不同的发育起源,其发育和维持依赖于不同的生长因子信号通路,并显示出明显的组织特异性适应,这有助于它们在正常生理和各种疾病中发挥作用。淋巴管的功能研究广泛依赖于小鼠模型的使用,这种模型允许选择性基因靶向淋巴管内皮细胞(LEC)。在此,我们将讨论淋巴管内皮细胞的多样性,并概述一些常用的淋巴管内皮细胞特异性诱导 Cre 株系和诱导方案,概述基本的实验参数及其影响。我们介绍了针对胚胎、出生后和成年 LEC 的优化治疗方案,有效地针对淋巴管研究中常用的器官,如肠系膜和皮肤。我们进一步强调了与每种诱导方案和小鼠品系相关的预期结果和局限性。建议的方案可作为实验室启动淋巴管靶向研究的推荐方案,旨在促进淋巴管领域的品系追踪和功能研究的统一性。
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引用次数: 0
Origin and Development of Interstitial Cells of Cajal. 卡贾尔间质细胞的起源与发展
Pub Date : 2024-08-12 DOI: 10.1387/ijdb.240057ar
Tara Sweet, Christeen M Abraham, Adam Rich

The digestive tract is a series of organs with specific functions and specialized anatomy. Each organ is organized similarly with concentric layers of epithelial, connective, smooth muscle, and neural tissues. Interstitial cells of Cajal (ICC) are distributed in smooth muscle layers and contribute to the organization of repetitive and rhythmic smooth muscle contractions. Understanding ICC development is critical to understanding gastrointestinal motility patterns. Experiments determining ICC origin and development in mice, chicken, and humans are described, as well as what is known in the zebrafish. At least six types of ICC in the digestive tract have been described and ICC heterogeneity in adult tissues is reviewed. Factors required for ICC development and for maintenance of ICC subclasses are described. This review is suitable for those new to ICC development and physiology, especially those focused on using zebrafish and other model systems.

消化道是一系列具有特殊功能和专门解剖结构的器官。每个器官都有类似的上皮组织、结缔组织、平滑肌和神经组织的同心层。卡贾尔间质细胞(ICC)分布在平滑肌层中,有助于组织平滑肌的重复性和节律性收缩。了解 ICC 的发育对了解胃肠道运动模式至关重要。本文介绍了确定小鼠、鸡和人类 ICC 起源和发育的实验,以及对斑马鱼的了解。已描述了消化道中至少六种类型的 ICC,并回顾了成体组织中 ICC 的异质性。文中还描述了 ICC 发育和维持 ICC 亚类所需的因素。这篇综述适合那些刚接触 ICC 发育和生理学的人,尤其是那些专注于使用斑马鱼和其他模型系统的人。
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引用次数: 0
Expression analysis of thg1l during Xenopus laevis development. thg1l在爪蟾发育过程中的表达分析。
Pub Date : 2024-07-15 DOI: 10.1387/ijdb.240033ma
Davide Martini, Chiara De Cesari, Matteo Digregorio, Alessia Muscò, Guido Giudetti, Martina Giannaccini, Massimiliano Andreazzoli

The tRNA-histidine guanylyltransferase 1-like (THG1L), also known as induced in high glucose-1 (IHG-1), encodes for an essential mitochondria-associated protein highly conserved throughout evolution, that catalyses the 3'-5' addition of a guanine to the 5'-end of tRNA-histidine (tRNAHis). Previous data indicated that THG1L plays a crucial role in the regulation of mitochondrial biogenesis and dynamics, in ATP production, and is critically involved in the modulation of apoptosis, cell-cycle progression and survival, as well as in cellular stress responses and redox homeostasis. Dysregulations of THG1L expression play a central role in various pathologies, including nephropathies, and neurodevelopmental disorders often characterized by developmental delay and cerebellar ataxia. Despite the essential role of THG1L, little is known about its expression during vertebrate development. Herein, we examined the detailed spatio-temporal expression of this gene in the developing Xenopus laevis. Our results show that thg1l is maternally inherited and its temporal expression suggests a role during the earliest stages of embryogenesis. Spatially, thg1l mRNA localizes in the ectoderm and marginal zone mesoderm during early stages of development. Then, at tadpole stages, thg1l transcripts mostly localise in neural crests and their derivatives, somites, developing kidney and central nervous system, therefore largely coinciding with territories displaying intense energy metabolism during organogenesis in Xenopus.

tRNA-histidine guanylyltransferase 1-like (THG1L),又称高糖诱导-1 (IHG-1),编码一种在整个进化过程中高度保守的重要线粒体相关蛋白,它能催化鸟嘌呤在 tRNA-histidine (tRNAHis)的 5'-5' 端进行 3'-5' 添加。以前的数据表明,THG1L 在线粒体生物生成和动态调控、ATP 生成中发挥着关键作用,并在细胞凋亡、细胞周期进展和存活调控以及细胞应激反应和氧化还原平衡中发挥着重要作用。THG1L 表达失调在各种病症中起着核心作用,包括肾病和通常以发育迟缓和小脑共济失调为特征的神经发育疾病。尽管THG1L起着至关重要的作用,但人们对其在脊椎动物发育过程中的表达却知之甚少。在此,我们研究了该基因在发育中的爪蟾中的详细时空表达。我们的研究结果表明,thg1l 是母性遗传的,它在时间上的表达表明它在胚胎发生的最早期阶段发挥作用。在空间上,thg1l mRNA 在发育早期定位于外胚层和边缘区中胚层。然后,在蝌蚪阶段,thg1l转录本主要定位于神经嵴及其衍生物、体节、发育中的肾脏和中枢神经系统,因此在很大程度上与章鱼器官形成过程中能量代谢旺盛的区域相吻合。
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引用次数: 0
Coenocystic oogenesis - modification of or deviation from the germ cell cyst paradigm? 同囊卵生--是对生殖细胞囊范式的修正还是偏离?
Pub Date : 2024-07-09 DOI: 10.1387/ijdb.240064mk
Malgorzata Kloc

Invertebrate and vertebrate species have many unusual cellular structures, such as long- or short-lived cell-in-cell structures and coenocytes. Coenocytes (often incorrectly described as syncytia) are multinuclear cells derived, unlike syncytia, not from the fusion of multiple cells but from multiple nuclear divisions without cytokinesis. An example of a somatic coenocyte is the coenocytic blastoderm in Drosophila. An astonishing property of coenocytes is the ability to differentiate the nuclei sharing a common cytoplasm into different subpopulations with different fate trajectories. An example of a germline coenocyte is the oogenic precursor of appendicularian tunicates, which shares many features with the somatic coenocyte of Drosophila. The germline coenocyte (coenocyst) is quite an unexpected structure because in most animals, including Drosophila, Xenopus, and mice, oogenesis proceeds within a group (cyst, nest) of sibling cells (cystocytes) connected by the intercellular bridges (ring canals, RCs) derived from multiple divisions with incomplete cytokinesis of a progenitor cell called the cystoblast. Here, I discuss the differences and similarities between cystocyte-based and coenocyst-based oogenesis, and the resemblance of coenocystic oogenesis to coenocytic somatic blastoderm in Drosophila. I also describe cell-in-cell structures that although not mechanistically, cytologically, or molecularly connected to somatic or germline coenocytes, are both unorthodox and intriguing cytological phenomena rarely covered by scientific literature.

无脊椎动物和脊椎动物有许多不寻常的细胞结构,例如长寿或短寿的细胞内结构和同源细胞。同源细胞(通常被错误地描述为合胞体)是多核细胞,与合胞体不同,它不是由多个细胞融合而成,而是由多个没有细胞分裂的核分裂而成。果蝇的合核胚层就是体细胞合核的一个例子。同源细胞的一个惊人特性是能够将具有共同细胞质的细胞核分化成具有不同命运轨迹的不同亚群。生殖系同源细胞的一个例子是阑尾鳞茎类动物的卵原前体,它与果蝇的体细胞同源细胞有许多共同之处。生殖同源细胞(同源囊胚)是一种非常出人意料的结构,因为在大多数动物(包括果蝇、爪蟾和小鼠)中,卵子发生都是在同胞细胞(囊胚)群(囊肿、巢)内进行的,同胞细胞由细胞间桥(环管、RC)连接,环管是由一种叫做囊胚细胞的原代细胞在细胞分裂不完全的情况下多次分裂产生的。在这里,我将讨论基于囊胚的卵子发生与基于同源囊胚的卵子发生之间的异同,以及同源囊胚的卵子发生与果蝇同源体细胞胚泡的相似性。我还描述了细胞内结构,虽然这些结构与体细胞或生殖细胞在机械学、细胞学或分子学上没有联系,但它们都是科学文献中很少涉及的非正统和有趣的细胞学现象。
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引用次数: 0
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