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Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission. 受体和新陈代谢对咖啡因防止酒精诱导刺激间叶多巴胺传导能力的影响。
Pub Date : 2024-06-11 DOI: 10.21203/rs.3.rs-4289552/v1
Riccardo Maccioni, Valentina Bassareo, Giuseppe Talani, Simone Zuffa, Yasin El Abiead, Irene Lorrai, Tomoya Kawamura, Sofia Pantis, Roberta Puliga, Romina Vargiu, Daniele Lecca, Paolo Enrico, Alessandra Peana, Laura Dazzi, Pieter C Dorrestein, Pietro Paolo Sanna, Enrico Sanna, Elio Acquas

The consumption of alcohol and caffeine affects the lives of billions of individuals worldwide. Although recent evidence indicates that caffeine impairs the reinforcing properties of alcohol, a characterization of its effects on alcohol-stimulated mesolimbic dopamine (DA) function was lacking. Acting as the pro-drug of salsolinol, alcohol excites DA neurons in the posterior ventral tegmental area (pVTA) and increases DA release in the nucleus accumbens shell (AcbSh). Here we show that caffeine, via antagonistic activity on A2A adenosine receptors (A2AR), prevents alcohol-dependent activation of mesolimbic DA function as assessed, in-vivo, by brain microdialysis of AcbSh DA and, in-vitro, by electrophysiological recordings of pVTA DA neuronal firing. Accordingly, while the A1R antagonist DPCPX fails to prevent the effects of alcohol on DA function, both caffeine and the A2AR antagonist SCH 58261 prevent alcohol-dependent pVTA generation of salsolinol and increase in AcbSh DA in-vivo, as well as alcohol-dependent excitation of pVTA DA neurons in-vitro. However, caffeine also prevents direct salsolinol- and morphine-stimulated DA function, suggesting that it can exert these inhibitory effects also independently from affecting alcohol-induced salsolinol formation or bioavailability. Finally, untargeted metabolomics of the pVTA showcases that caffeine antagonizes alcohol-mediated effects on molecules (e.g. phosphatidylcholines, fatty amides, carnitines) involved in lipid signaling and energy metabolism, which could represent an additional salsolinol-independent mechanism of caffeine in impairing alcohol-mediated stimulation of mesolimbic DA transmission. In conclusion, the outcomes of this study strengthen the potential of caffeine, as well as of A2AR antagonists, for future development of preventive/therapeutic strategies for alcohol use disorder.

酒精和咖啡因的消费影响着全球数十亿人的生活。尽管最近有证据表明咖啡因会削弱酒精的强化作用,但却缺乏咖啡因对酒精刺激的间叶多巴胺(DA)功能的影响特征。酒精作为salsolinol的原药,可兴奋后腹侧被盖区(pVTA)的DA神经元,并增加核团外壳(AcbSh)的DA释放。在这里,我们展示了咖啡因通过对 A2A 腺苷受体(A2AR)的拮抗作用,阻止了酒精对间叶 DA 功能的依赖性激活,这种激活在体内是通过对 AcbSh DA 的脑微量透析评估的,在体外是通过对 pVTA DA 神经元发射的电生理记录评估的。因此,虽然A1R拮抗剂DPCPX不能阻止酒精对DA功能的影响,但咖啡因和A2AR拮抗剂SCH 58261都能阻止酒精依赖性体内pVTA产生salsolinol和AcbSh DA增加,以及酒精依赖性体外pVTA DA神经元兴奋。然而,咖啡因也能阻止直接的鲨烯醇和吗啡刺激的DA功能,这表明咖啡因也能发挥这些抑制作用,而不影响酒精诱导的鲨烯醇的形成或生物利用度。最后,pVTA 的非靶向代谢组学研究表明,咖啡因能拮抗酒精介导的对脂质信号转导和能量代谢相关分子(如磷脂酰胆碱、脂肪酰胺、肉毒碱)的影响,这可能代表咖啡因在损害酒精介导的刺激间叶 DA 传递方面的另一种与香豆素醇无关的机制。总之,这项研究的结果增强了咖啡因和 A2AR 拮抗剂在未来开发酒精使用障碍的预防/治疗策略方面的潜力。
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引用次数: 0
Variants in the Kallikrein Gene Family and Hypermobile Ehlers-Danlos Syndrome. Kallikrein 基因家族变异与高移动性埃勒斯-丹洛斯综合症
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4547888/v1
Cortney Gensemer, Tyler Beck, Lilong Guo, Taylor Petrucci, Jordan Morningstar, Isabelle Kornblau, Kathryn Byerly, Rachel Biggs, Amy Weintraub, Kelsey Moore, Natalie Koren, Victoria Daylor, Christina Hastings, Emily Oberlies, Ella R Zientara, Elsie Devey, Sarah Dooley, Kristina Stayer, Roman Fenner, Katherine Singleton, Sofia Luzbetak, Deatra Bear, Rebecca Byrd, Julianna Weninger, Erika Bistran, Gyda Beeson, Joshua Kerns, Molly Griggs, Charlotte Griggs, Madalyn Osterhaus, Emily Fleck, Jillian Schnaudigel, Shaina Butler, Sydney Severance, Wiley Kendall, Joe R Delaney, Daniel P Judge, Peng Chen, Hai Yao, Jan Guz, Alexander Awgulewitsch, Steven A Kautz, Rupak Mukherjee, Robert Price, Fraser Henderson, Steven Shapiro, Clair A Francomano, Jason C Kovacic, Mark Lavallee, Sunil Patel, Takiy-Eddine Berrandou, Susan A Slaugenhaupt, David Milan, Amy R Kontorovich, Nabila Bouatia-Naji, Russell A Norris

Hypermobile Ehlers-Danlos syndrome (hEDS) is a common heritable connective tissue disorder that lacks a known genetic etiology. To identify genetic contributions to hEDS, whole exome sequencing was performed on families and a cohort of sporadic hEDS patients. A missense variant in Kallikrein-15 (KLK15 p. Gly226Asp), segregated with disease in two families and genetic burden analyses of 197 sporadic hEDS patients revealed enrichment of variants within the Kallikrein gene family. To validate pathogenicity, the variant identified in familial studies was used to generate knock-in mice. Consistent with our clinical cohort, Klk15 G224D/+ mice displayed structural and functional connective tissue defects within multiple organ systems. These findings support Kallikrein gene variants in the pathogenesis of hEDS and represent an important step towards earlier diagnosis and better clinical outcomes.

高移动性埃勒斯-丹洛斯综合征(hEDS)是一种常见的遗传性结缔组织疾病,缺乏已知的遗传病因。为了确定遗传因素对 hEDS 的影响,对家族和散发性 hEDS 患者队列进行了全外显子组测序。在两个家族中,Kallikrein-15(KLK15 p. Gly226Asp)中的一个错义变体与疾病发生分离,对197名散发性hEDS患者进行的遗传负荷分析显示,Kallikrein基因家族中的变体富集。为了验证致病性,我们利用在家族研究中发现的变体来产生基因敲入小鼠。与我们的临床队列一致,Klk15 G224D/+ 小鼠在多个器官系统中表现出结缔组织结构和功能缺陷。这些研究结果支持了 Kallikrein 基因变异在 hEDS 发病机制中的作用,是朝着更早的诊断和更好的临床结果迈出的重要一步。
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引用次数: 0
Rapid Development of a Registry to Accelerate COVID-19 Vaccine Clinical Trials. 快速开发注册系统,加快 COVID-19 疫苗临床试验。
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4397271/v1
Neil F Abernethy, Kylie McCloskey, Meg Trahey, Laurie Rinn, Gail B Broder, Michele Andrasik, Rebecca Laborde, Daniel McGhan, Scott Spendolini, Senthil Marimuthu, Adam Kanzmeier, Jayson Hanes, James Kublin

Background: The unprecedented scientific response to the SARS-Cov-2 pandemic in 2020 required the rapid development and activation of extensive clinical trial networks to study vaccines and therapeutics. The COVID-19 Prevention Network (CoVPN) coordinated hundreds of sites conducting phase 2 and 3 clinical trials of vaccines and antibody therapeutics. To facilitate these clinical trials, the CoVPN Volunteer Screening Registry (VSR) was created to collect volunteer information at scale, identify volunteers at risk of COVID-19 who met enrollment criteria, distribute candidates across clinical trial sites, and enable monitoring of volunteering and enrollment progress.

Methods: We developed a secure database to support three primary web-based interfaces: a national volunteer questionnaire intake form, a clinical trial site portal, and an Administrative Portal. The Site Portal supported filters based on volunteer attributes, visual analytics, enrollment status tracking, geographic search, and clinical risk prediction. The Administrative Portal supported oversight and development with pre-specified reports aggregated by geography, trial, and trial site; charts of volunteer rates over time; volunteer risk score calculation; and dynamic, user-defined reports.

Findings: Over 650,000 volunteers joined the VSR, and 1094 users were trained to utilize the system. The VSR played a key role in recruitment for the Moderna, Oxford-AstraZeneca, Janssen, and Novavax vaccine clinical trials, provided support to the Pfizer and Sanofi vaccine and prophylactic antibody clinical trials, and enhanced the diversity of trial participants. Clinical trial sites selected 166,729 volunteer records for follow-up screening, and of these 47·7% represented groups prioritized for increased enrollment. Despite the unprecedented urgency of its development, the system maintained 99·99% uptime.

Interpretation: The success of the VSR demonstrates that information tools can be rapidly yet safely developed through a public-private partnership and integrated into a distributed and accelerated clinical trial setting. We further summarize the requirements, design, and development of the system, and discuss lessons learned for future pandemic preparedness.

背景 2020 年,针对 SARS-Cov-2 大流行采取了前所未有的科学应对措施,这要求迅速开发和启动广泛的临床试验网络,以研究疫苗和疗法。COVID-19 预防网络(CoVPN)协调了数百个站点开展疫苗和抗体疗法的 2 期和 3 期临床试验。为了促进这些临床试验,我们创建了 CoVPN 志愿者筛选注册表 (VSR),以大规模收集志愿者信息、识别符合注册标准的 COVID-19 高危志愿者、在各临床试验点分发候选者,并监控志愿服务和注册进度。方法 我们开发了一个安全数据库,以支持三个主要的网络界面:全国志愿者问卷接收表、临床试验机构门户网站和管理门户网站。临床试验机构门户网站支持基于志愿者属性的过滤器、可视化分析、注册状态跟踪、地理搜索和临床风险预测。行政门户网站支持监督和开发,提供按地域、试验和试验场地汇总的预先指定报告;随时间变化的志愿者比率图表;志愿者风险评分计算;以及用户自定义的动态报告。研究结果 65 万多名志愿者加入了 VSR,1094 名用户接受了系统使用培训。VSR 在 Moderna、Oxford-AstraZeneca、Janssen 和 Novavax 疫苗临床试验的招募中发挥了关键作用,为辉瑞和赛诺菲的疫苗和预防性抗体临床试验提供了支持,并增强了试验参与者的多样性。临床试验基地选择了 166729 份志愿者记录进行跟踪筛查,其中 47%-7% 代表了优先增加注册人数的群体。尽管开发工作空前紧迫,但系统仍保持了 99-99% 的正常运行时间。释义 VSR 的成功表明,可以通过公私合作的方式快速安全地开发信息工具,并将其整合到分布式加速临床试验环境中。我们进一步总结了该系统的要求、设计和开发,并讨论了为未来大流行病防备工作吸取的经验教训。
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引用次数: 0
Setting a research agenda for examining early risk for elevated cognitive disengagement syndrome symptoms using data from the ABCD cohort. 制定研究议程,利用 ABCD 队列的数据研究认知脱离综合征症状升高的早期风险。
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4468007/v1
Kelsey K Wiggs, Taryn E Cook, Isha Lodhawala, Emma N Cleary, Kimberly Yolton, Stephen P Becker

Background: Little research has examined early life risk for symptoms of cognitive disengagement syndrome (CDS) despite a well-established literature regarding co-occurring outcomes (e.g., attention-deficit/hyperactivity disorder). The current study estimated bivariate associations between early life risk factors and CDS in a large and representative sample of U.S. children.

Methods: We conducted secondary analyses of baseline data from the Adolescent Brain Cognitive Development (ABCD) study (N = 8,096 children, 9-10 years old). Birthing parents reported early life risk factors on a developmental history questionnaire, including parental, prenatal, delivery and birth, and developmental milestone information. They also completed the Child Behavior Checklist, which includes a CDS subscale that was dichotomized to estimate the odds of elevated CDS symptoms (i.e., T-score > 70) in children related to risk indices.

Results: We observed significantly elevated odds of CDS related to parental risk factors (i.e., unplanned pregnancy, pregnancy awareness after 6 weeks, teenage parenthood), birthing parent illnesses in pregnancy (i.e., severe nausea, proteinuria, pre-eclampsia/toxemia, severe anemia, urinary tract infection), pregnancy complications (i.e., bleeding), prenatal substance exposures (i.e., prescription medication, tobacco, illicit drugs), delivery and birth risk factors (i.e., child blue at delivery, child not breathing, jaundice, incubation after delivery), and late motor and speech milestones in children.

Conclusions: Several early-life risk factors were associated with elevated odds of CDS at ages 9-10 years; study design prevents the determination of causality. Further investigation is warranted regarding early life origins of CDS with priority given to risk indices that have upstream commonalities (i.e., that restrict fetal growth, nutrients, and oxygen).

背景:尽管有关认知脱离综合症(CDS)并发症(如注意力缺陷/多动障碍)的文献已广为流传,但很少有研究对认知脱离综合症(CDS)症状的早期生活风险进行调查。本研究通过大量具有代表性的美国儿童样本,估计了早期生活风险因素与认知脱离综合症之间的二元关联:我们对青少年大脑认知发展(ABCD)研究的基线数据(8,096 名 9-10 岁儿童)进行了二次分析。分娩父母在发育史问卷中报告了早期生活风险因素,包括父母、产前、分娩和出生以及发育里程碑信息。他们还填写了儿童行为检查表,其中包括一个 CDS 子量表,该子量表被二分法化,以估计与风险指数相关的儿童 CDS 症状升高(即 T- 分值 > 70)的几率:结果:我们观察到,与父母风险因素(即计划外怀孕、6 周后才意识到怀孕、未成年父母)、父母孕期疾病(即严重恶心、蛋白尿、先兆子痫/毒血症、严重贫血、尿路感染)、妊娠并发症(即、出血)、产前药物接触(即处方药、烟草、非法药物)、分娩和出生风险因素(即分娩时婴儿面色发青、婴儿没有呼吸、黄疸、产后潜伏期)以及儿童运动和语言发育迟缓:一些早期生活风险因素与 9-10 岁儿童 CDS 的几率升高有关;研究设计妨碍了因果关系的确定。有必要进一步调查 CDS 的早期起源,优先考虑具有上游共性(即限制胎儿生长、营养和氧气)的风险指数。
{"title":"Setting a research agenda for examining early risk for elevated cognitive disengagement syndrome symptoms using data from the ABCD cohort.","authors":"Kelsey K Wiggs, Taryn E Cook, Isha Lodhawala, Emma N Cleary, Kimberly Yolton, Stephen P Becker","doi":"10.21203/rs.3.rs-4468007/v1","DOIUrl":"10.21203/rs.3.rs-4468007/v1","url":null,"abstract":"<p><strong>Background: </strong>Little research has examined early life risk for symptoms of cognitive disengagement syndrome (CDS) despite a well-established literature regarding co-occurring outcomes (e.g., attention-deficit/hyperactivity disorder). The current study estimated bivariate associations between early life risk factors and CDS in a large and representative sample of U.S. children.</p><p><strong>Methods: </strong>We conducted secondary analyses of baseline data from the Adolescent Brain Cognitive Development (ABCD) study (N = 8,096 children, 9-10 years old). Birthing parents reported early life risk factors on a developmental history questionnaire, including parental, prenatal, delivery and birth, and developmental milestone information. They also completed the Child Behavior Checklist, which includes a CDS subscale that was dichotomized to estimate the odds of elevated CDS symptoms (i.e., <i>T</i>-score > 70) in children related to risk indices.</p><p><strong>Results: </strong>We observed significantly elevated odds of CDS related to parental risk factors (i.e., unplanned pregnancy, pregnancy awareness after 6 weeks, teenage parenthood), birthing parent illnesses in pregnancy (i.e., severe nausea, proteinuria, pre-eclampsia/toxemia, severe anemia, urinary tract infection), pregnancy complications (i.e., bleeding), prenatal substance exposures (i.e., prescription medication, tobacco, illicit drugs), delivery and birth risk factors (i.e., child blue at delivery, child not breathing, jaundice, incubation after delivery), and late motor and speech milestones in children.</p><p><strong>Conclusions: </strong>Several early-life risk factors were associated with elevated odds of CDS at ages 9-10 years; study design prevents the determination of causality. Further investigation is warranted regarding early life origins of CDS with priority given to risk indices that have upstream commonalities (i.e., that restrict fetal growth, nutrients, and oxygen).</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11213211/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141474333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differences in the DNA Methylome of T cells in Adults With Asthma of Varying Severity. 不同严重程度的成人哮喘患者 T 细胞 DNA 甲基组的差异。
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4476948/v1
Yixuan Liao, Raymond Cavalcante, Jonathan Waller, Furong Deng, Anne Scruggs, Yvonne Huang, Ulus Atasoy, Yahong Chen, Steven Huang

Background: DNA methylation plays a critical role in asthma development, but differences in DNA methylation among adults with varying asthma severity or asthma endotypes are less well-defined.

Objective: To examine how DNA methylomic patterns differ among adults with asthma based on asthma severity and airway inflammation.

Methods: Peripheral blood T cells from 35 adults with asthma in Beijing, China were serially collected over time (130 samples total) and analyzed for global DNA methylation using the Illumina MethylationEPIC Array. Differential methylation was compared among subjects with varying airway inflammation and severity, as measured by fraction of exhaled nitric oxide, forced expiratory volume in one second (FEV1), and Asthma Control Test (ACT) scores.

Results: Significant differences in DNA methylation were noted among subjects with different degrees of airway inflammation and asthma severity. These differences in DNA methylation were annotated to genes that were enriched in pathways related to asthma or T cell function and included gene ontology categories related to MHC class II assembly, T cell activation, interleukin (IL)-1, and IL-12. Genes related to P450 drug metabolism, glutathione metabolism, and developmental pathways were also differentially methylated in comparisons between subjects with high vs low FEV1 and ACT. Notable genes that were differentially methylated based on asthma severity included RUNX3, several members of the HLA family, AGT, PTPRC, PTPRJ, and several genes downstream of the JAK2 and TNF signaling pathway.

Conclusion: These findings demonstrate how adults with asthma of varying severity possess differences in peripheral blood T cell DNA methylation that contribute to the phenotype and severity of their overall disease.

背景 DNA 甲基化在哮喘发病过程中起着至关重要的作用,但不同哮喘严重程度或哮喘内型的成人之间 DNA 甲基化的差异还不太明确。目的 研究成人哮喘患者的 DNA 甲基化模式在哮喘严重程度和气道炎症的基础上有何不同。方法 连续采集中国北京 35 名成人哮喘患者的外周血 T 细胞(共 130 个样本),并使用 Illumina MethylationEPIC 阵列对其进行全局 DNA 甲基化分析。比较了不同气道炎症和严重程度的受试者之间的甲基化差异,以呼气一氧化氮分数、一秒钟用力呼气容积(FEV1)和哮喘控制测试(ACT)评分来衡量。结果 不同气道炎症程度和哮喘严重程度的受试者的 DNA 甲基化存在显著差异。DNA甲基化的这些差异被注释为富集在与哮喘或T细胞功能相关通路中的基因,包括与MHC II类组装、T细胞活化、白细胞介素(IL)-1和IL-12相关的基因本体论类别。与 P450 药物代谢、谷胱甘肽代谢和发育途径相关的基因在 FEV1 和 ACT 值高与低的受试者之间也存在甲基化差异。根据哮喘严重程度发生不同甲基化的基因包括 RUNX3、HLA 家族的几个成员、AGT、PTPRC、PTPRJ 以及 JAK2 和 TNF 信号通路下游的几个基因。结论 这些研究结果表明,不同严重程度的成人哮喘患者的外周血 T 细胞 DNA 甲基化存在差异,而这种差异会导致其整体疾病的表型和严重程度。
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引用次数: 0
GestaltMatcher Database - A global reference for facial phenotypic variability in rare human diseases. GestaltMatcher 数据库 - 罕见人类疾病面部表型变异的全球参考资料。
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4438861/v1
Hellen Lesmann, Alexander Hustinx, Shahida Moosa, Hannah Klinkhammer, Elaine Marchi, Pilar Caro, Ibrahim M Abdelrazek, Jean Tori Pantel, Merle Ten Hagen, Meow-Keong Thong, Rifhan Azwani Binti Mazlan, Sok Kun Tae, Tom Kamphans, Wolfgang Meiswinkel, Jing-Mei Li, Behnam Javanmardi, Alexej Knaus, Annette Uwineza, Cordula Knopp, Tinatin Tkemaladze, Miriam Elbracht, Larissa Mattern, Rami Abou Jamra, Clara Velmans, Vincent Strehlow, Maureen Jacob, Angela Peron, Cristina Dias, Beatriz Carvalho Nunes, Thainá Vilella, Isabel Furquim Pinheiro, Chong Ae Kim, Maria Isabel Melaragno, Hannah Weiland, Sophia Kaptain, Karolina Chwiałkowska, Miroslaw Kwasniewski, Ramy Saad, Sarah Wiethoff, Himanshu Goel, Clara Tang, Anna Hau, Tahsin Stefan Barakat, Przemysław Panek, Amira Nabil, Julia Suh, Frederik Braun, Israel Gomy, Luisa Averdunk, Ekanem Ekure, Gaber Bergant, Borut Peterlin, Claudio Graziano, Nagwa Gaboon, Moisés Fiesco-Roa, Alessandro Mauro Spinelli, Nina-Maria Wilpert, Prasit Phowthongkum, Nergis Güzel, Tobias B Haack, Rana Bitar, Andreas Tzschach, Agusti Rodriguez-Palmero, Theresa Brunet, Sabine Rudnik-Schöneborn, Silvina Noemi Contreras-Capetillo, Ava Oberlack, Carole Samango-Sprouse, Teresa Sadeghin, Margaret Olaya, Konrad Platzer, Artem Borovikov, Franziska Schnabel, Lara Heuft, Vera Herrmann, Renske Oegema, Nour Elkhateeb, Sheetal Kumar, Katalin Komlosi, Khoushoua Mohamed, Silvia Kalantari, Fabio Sirchia, Antonio F Martinez-Monseny, Matthias Höller, Louiza Toutouna, Amal Mohamed, Amaia Lasa-Aranzasti, John A Sayer, Nadja Ehmke, Magdalena Danyel, Henrike Sczakiel, Sarina Schwartzmann, Felix Boschann, Max Zhao, Ronja Adam, Lara Einicke, Denise Horn, Kee Seang Chew, Choy Chen Kam, Miray Karakoyun, Ben Pode-Shakked, Aviva Eliyahu, Rachel Rock, Teresa Carrion, Odelia Chorin, Yuri A Zarate, Marcelo Martinez Conti, Mert Karakaya, Moon Ley Tung, Bharatendu Chandra, Arjan Bouman, Aime Lumaka, Naveed Wasif, Marwan Shinawi, Patrick R Blackburn, Tianyun Wang, Tim Niehues, Axel Schmidt, Regina Rita Roth, Dagmar Wieczorek, Ping Hu, Rebekah L Waikel, Suzanna E Ledgister Hanchard, Gehad Elmakkawy, Sylvia Safwat, Frédéric Ebstein, Elke Krüger, Sébastien Küry, Stéphane Bézieau, Annabelle Arlt, Eric Olinger, Felix Marbach, Dong Li, Lucie Dupuis, Roberto Mendoza-Londono, Sofia Douzgou Houge, Denisa Weis, Brian Hon-Yin Chung, Christopher C Y Mak, Hülya Kayserili, Nursel Elcioglu, Ayca Aykut, Peli Özlem Şimşek-Kiper, Nina Bögershausen, Bernd Wollnik, Heidi Beate Bentzen, Ingo Kurth, Christian Netzer, Aleksandra Jezela-Stanek, Koen Devriendt, Karen W Gripp, Martin Mücke, Alain Verloes, Christian P Schaaf, Christoffer Nellåker, Benjamin D Solomon, Markus M Nöthen, Ebtesam Abdalla, Gholson J Lyon, Peter M Krawitz, Tzung-Chien Hsieh

The most important factor that complicates the work of dysmorphologists is the significant phenotypic variability of the human face. Next-Generation Phenotyping (NGP) tools that assist clinicians with recognizing characteristic syndromic patterns are particularly challenged when confronted with patients from populations different from their training data. To that end, we systematically analyzed the impact of genetic ancestry on facial dysmorphism. For that purpose, we established the GestaltMatcher Database (GMDB) as a reference dataset for medical images of patients with rare genetic disorders from around the world. We collected 10,980 frontal facial images - more than a quarter previously unpublished - from 8,346 patients, representing 581 rare disorders. Although the predominant ancestry is still European (67%), data from underrepresented populations have been increased considerably via global collaborations (19% Asian and 7% African). This includes previously unpublished reports for more than 40% of the African patients. The NGP analysis on this diverse dataset revealed characteristic performance differences depending on the composition of training and test sets corresponding to genetic relatedness. For clinical use of NGP, incorporating non-European patients resulted in a profound enhancement of GestaltMatcher performance. The top-5 accuracy rate increased by +11.29%. Importantly, this improvement in delineating the correct disorder from a facial portrait was achieved without decreasing the performance on European patients. By design, GMDB complies with the FAIR principles by rendering the curated medical data findable, accessible, interoperable, and reusable. This means GMDB can also serve as data for training and benchmarking. In summary, our study on facial dysmorphism on a global sample revealed a considerable cross ancestral phenotypic variability confounding NGP that should be counteracted by international efforts for increasing data diversity. GMDB will serve as a vital reference database for clinicians and a transparent training set for advancing NGP technology.

使畸形学家的工作复杂化的最重要因素是人类面部的显著表型变异。下一代表型分析(NGP)工具可帮助临床医生识别特征性综合征模式,但在面对与训练数据不同人群的患者时,这些工具尤其面临挑战。为此,我们系统分析了遗传血统对面部畸形的影响。为此,我们建立了 GestaltMatcher 数据库(GMDB),作为全球罕见遗传疾病患者医学图像的参考数据集。我们收集了来自 8346 名患者的 10980 张面部正面图像,其中超过四分之一之前未曾公开发表过,代表了 581 种罕见疾病。虽然主要血统仍是欧洲人(67%),但通过全球合作,来自代表性不足人群的数据已大大增加(19% 亚洲人和 7% 非洲人)。其中包括 40% 以上的非洲患者此前未发表的报告。对这一多样化数据集进行的 NGP 分析表明,根据与遗传相关性相对应的训练集和测试集的组成不同,其性能也存在明显差异。在 NGP 的临床应用中,纳入非欧洲患者可显著提高 GestaltMatcher 的性能。前五名的准确率提高了 11.29%。重要的是,这种从面部肖像中划分出正确疾病的改进并没有降低欧裔患者的性能。在设计上,GMDB 遵循 FAIR 原则,使整理后的医疗数据可查找、可访问、可互操作和可重复使用。这意味着 GMDB 也可以作为培训和基准测试的数据。总之,我们对全球样本面部畸形的研究揭示了相当大的跨祖先表型变异性对 NGP 的干扰,国际社会应努力提高数据的多样性以抵消这种干扰。全球面部畸形数据库将成为临床医生的重要参考数据库,也是促进 NGP 技术发展的透明培训集。
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Next-Generation Phenotyping (NGP) tools that assist clinicians with recognizing characteristic syndromic patterns are particularly challenged when confronted with patients from populations different from their training data. To that end, we systematically analyzed the impact of genetic ancestry on facial dysmorphism. For that purpose, we established the GestaltMatcher Database (GMDB) as a reference dataset for medical images of patients with rare genetic disorders from around the world. We collected 10,980 frontal facial images - more than a quarter previously unpublished - from 8,346 patients, representing 581 rare disorders. Although the predominant ancestry is still European (67%), data from underrepresented populations have been increased considerably via global collaborations (19% Asian and 7% African). This includes previously unpublished reports for more than 40% of the African patients. The NGP analysis on this diverse dataset revealed characteristic performance differences depending on the composition of training and test sets corresponding to genetic relatedness. For clinical use of NGP, incorporating non-European patients resulted in a profound enhancement of GestaltMatcher performance. The top-5 accuracy rate increased by +11.29%. Importantly, this improvement in delineating the correct disorder from a facial portrait was achieved without decreasing the performance on European patients. By design, GMDB complies with the FAIR principles by rendering the curated medical data findable, accessible, interoperable, and reusable. This means GMDB can also serve as data for training and benchmarking. In summary, our study on facial dysmorphism on a global sample revealed a considerable cross ancestral phenotypic variability confounding NGP that should be counteracted by international efforts for increasing data diversity. GMDB will serve as a vital reference database for clinicians and a transparent training set for advancing NGP technology.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11188141/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141433747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Patient and Parent Knowledge, Understanding, and Concerns After a New Diagnosis of Ehlers Danlos Syndrome. 埃勒斯-丹洛斯综合症新诊断后患者和家长的知识、理解和担忧。
Pub Date : 2024-06-10 DOI: 10.21203/rs.3.rs-4433259/v1
Jordan T Jones, Lora L Black, William R Black

Introduction: After diagnosis of Ehlers Danlos Syndrome (EDS), it is unclear what information patients and parents need and understand about EDS. The objective of this study is to characterize patient and parent knowledge and concerns about EDS after a diagnosis of EDS is made to determine patient and parent concerns and identify barriers that cause discomfort with the diagnosis.

Methods: A convenience sample of patient and parent dyads were recruited after new diagnosis of EDS. Patients and parents completed questionnaires that assessed knowledge, comfort, and barriers of EDS before and after diagnosis, EDS education materials accessed, and additional clinical needs and concerns.

Results: Seventy-two dyads completed the survey.

Conclusion: Many respondents actively seek information on the diagnosis and management of EDS. Parents and patients look for information about EDS differently. Parents have more concerns after diagnosis and both want well-constructed, empirically supported educational materials delivered via multiple modalities, which makes clinical guidelines more essential.

导言:埃勒斯-丹洛斯综合征(EDS)确诊后,患者和家长需要了解哪些有关 EDS 的信息尚不清楚。本研究的目的是了解患者和家长在确诊 EDS 后对 EDS 的了解程度和关注点,以确定患者和家长的关注点,并找出导致对诊断感到不适的障碍。研究方法:在新诊断出 EDS 后,对患者和家长进行抽样调查。患者和家长填写调查问卷,评估诊断前后对 EDS 的了解程度、舒适度和障碍、获得的 EDS 教育材料以及额外的临床需求和担忧。结果:72对夫妇完成了调查。结论许多受访者积极寻求有关 EDS 诊断和管理的信息。家长和患者寻找 EDS 信息的方式不同。家长在确诊后有更多的顾虑,他们都希望通过多种方式获得结构合理、有实证支持的教育材料,这使得临床指南变得更加重要。
{"title":"Patient and Parent Knowledge, Understanding, and Concerns After a New Diagnosis of Ehlers Danlos Syndrome.","authors":"Jordan T Jones, Lora L Black, William R Black","doi":"10.21203/rs.3.rs-4433259/v1","DOIUrl":"10.21203/rs.3.rs-4433259/v1","url":null,"abstract":"<p><strong>Introduction: </strong>After diagnosis of Ehlers Danlos Syndrome (EDS), it is unclear what information patients and parents need and understand about EDS. The objective of this study is to characterize patient and parent knowledge and concerns about EDS after a diagnosis of EDS is made to determine patient and parent concerns and identify barriers that cause discomfort with the diagnosis.</p><p><strong>Methods: </strong>A convenience sample of patient and parent dyads were recruited after new diagnosis of EDS. Patients and parents completed questionnaires that assessed knowledge, comfort, and barriers of EDS before and after diagnosis, EDS education materials accessed, and additional clinical needs and concerns.</p><p><strong>Results: </strong>Seventy-two dyads completed the survey.</p><p><strong>Conclusion: </strong>Many respondents actively seek information on the diagnosis and management of EDS. Parents and patients look for information about EDS differently. Parents have more concerns after diagnosis and both want well-constructed, empirically supported educational materials delivered via multiple modalities, which makes clinical guidelines more essential.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11213229/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141474371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Peripheral endotoxin exposure in mice activates crosstalk between phagocytes in the brain and periphery. 小鼠暴露于外周内毒素会激活大脑和外周吞噬细胞之间的串联。
Pub Date : 2024-06-07 DOI: 10.21203/rs.3.rs-4478250/v1
Jake Boles, Oihane Uriarte Huarte, Malú Gámez Tansey

Background: Inflammation is a central process of many neurological diseases, and a growing number of studies suggest that non-brain-resident immune cells may contribute to this neuroinflammation. However, the unique contributions of specific immune cell subsets to neuroinflammation are presently unknown, and it is unclear how communication between brain-resident and non-resident immune cells underlies peripheral immune cell involvement in neuroinflammation.

Methods: In this study, we employed the well-established model of lipopolysaccharide (LPS)-induced neuroinflammation and captured brain-resident and non-resident immune cells from the brain and its vasculature by magnetically enriching cell suspensions from the non-perfused brain for CD45 + cells. Then, we identified immune subtype-specific neuroinflammatory processes using single-cell genomics and predicted the crosstalk between immune cell subtypes by analyzing the simultaneous expression of ligands and receptors.

Results: We observed a greater abundance of peripheral phagocytes associated with the brain in this model of neuroinflammation, and report that these professional phagocytes activated similar transcriptional profiles to microglia during LPS-induced neuroinflammation. And, we observed that the probable crosstalk between microglia and peripheral phagocytes was activated in this model while homotypic microglial communication was likely to be decreased.

Conclusions: Our novel findings reveal that microglia signaling to non-brain-resident peripheral phagocytes is preferentially triggered by peripheral inflammation, which is associated with brain infiltration of peripheral cells. Overall, our study supports the involvement of peripheral immune cells in neuroinflammation and suggests several possible molecular signaling pathways between microglia and peripheral cells that may facilitate central-peripheral crosstalk during inflammation. Examining these molecular mediators in human disease and other rodent models may reveal novel targets that modify brain health, especially in comorbidities characterized by peripheral inflammation.

背景 炎症是许多神经系统疾病的核心过程,越来越多的研究表明,非脑驻留免疫细胞可能会导致这种神经炎症。然而,目前尚不清楚特定免疫细胞亚群对神经炎症的独特贡献,也不清楚脑驻留免疫细胞和非脑驻留免疫细胞之间的交流如何成为外周免疫细胞参与神经炎症的基础。方法 在这项研究中,我们采用了成熟的脂多糖(LPS)诱导神经炎症模型,通过磁性富集非灌注脑细胞悬浮液中的 CD45 + 细胞,从脑及其血管中捕获脑驻留和非驻留免疫细胞。然后,我们利用单细胞基因组学鉴定了免疫亚型特异性神经炎症过程,并通过分析配体和受体的同时表达预测了免疫细胞亚型之间的相互影响。结果 我们观察到,在这种神经炎症模型中,与大脑相关的外周吞噬细胞数量更多,并报告说,在 LPS 诱导的神经炎症过程中,这些专业吞噬细胞激活了与小胶质细胞类似的转录谱。而且,我们观察到,在该模型中,小胶质细胞与外周吞噬细胞之间的串联可能被激活,而同型小胶质细胞的交流可能减少。结论 我们的新发现揭示了小胶质细胞向非脑驻留外周吞噬细胞发出信号是由外周炎症优先触发的,而外周炎症与外周细胞的脑浸润有关。总之,我们的研究支持外周免疫细胞参与神经炎症,并提出了小胶质细胞和外周细胞之间可能存在的几种分子信号通路,这些通路可能会在炎症期间促进中枢-外周串联。在人类疾病和其他啮齿类动物模型中研究这些分子介质可能会发现改变大脑健康的新靶点,尤其是以外周炎症为特征的合并症。
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引用次数: 0
Crossroads of Choice: A qualitative study of the factors influencing decisions to transition from sex work among women engaged in sex work in Southern Uganda. 选择的十字路口:关于影响乌干达南部从事性工作的妇女决定从性工作转型的因素的定性研究。
Pub Date : 2024-06-07 DOI: 10.21203/rs.3.rs-4468785/v1
Jennifer Nattabi, Ozge Sensoy Bahar, Josephine Nabayinda, Proscovia Nabunya, Joshua Kiyingi, Samuel Kizito, Flavia Namuwonge, Edward Nsubuga, Susan S Witte, Fred M Ssewamala

Background: Women Engaged in commercial Sex Work (WESW) are exposed to behavioral, biological, and structural factors that exacerbate their risk to HIV infection and other sexually transmitted infections. While commercial sex work may appear voluntary, WESW are more likely to be constrained to selling sex due to limited viable alternatives. To effectively support this vulnerable group of women, it is critical to understand factors that facilitate and impede their decisions to transition from sex work into other careers or jobs. The current study explored women's decision to transition from sex work into other careers or jobs.

Methods: Semi-structured in-depth interviews were conducted with 53 WESW aged 20-47 enrolled within a larger study-Kyaterekera study, a randomized clinical trial (N = 542) implemented in 19 HIV hotspots in the Southern region of Uganda. Participants were selected based on their intervention attendance (high/medium/low attendance). The interviews were conducted in Luganda the widely spoken language in the study area to explore the factors influencing women's decisions to from transition from sex work to other jobs or careers. The main interview question used for this study was, "What are some of the factors that may influence whether you would transition from sex work to other jobs or vocations?". All interviews were audio-recorded, transcribed verbatim and translated into English. Thematic analysis in Dedoose software was used to analyze the data.

Results: Participants reported three primary types of decisions, including considering leaving sex work, deciding to leave, and continuing sex work. The emerging themes from the interviews were categorized into individual and structural level facilitators and barriers to leave sex work. Individual level factors included issues of stigma, discrimination, and aging as factors that facilitated women's decision to leave sex work. At the structural level, factors which include interpersonal stigma and discrimination (from immediate family and community members), physical and sexual violence and income related factors were identified as facilitators and barriers to leaving sex work.

Conclusion: Our study highlights the complex decision-making processes among WESW as they navigate transitions to alternative jobs or careers. By advocating for multifaceted interventions and policies tailored to the diverse challenges faced by WESW, our study contributes to a more informed approach to supporting their transition out of sex work.

背景从事商业性工作的女性(WESW)面临着行为、生物和结构性因素的影响,这些因素加剧了她们感染 HIV 和其他性传播疾病的风险。虽然商业性性工作看似自愿,但由于可行的替代方式有限,从事商业性性工作的女性更有可能被迫从事性交易。为了有效地支持这一弱势女性群体,了解促进和阻碍她们决定从性工作过渡到其他职业或工作的因素至关重要。本研究探讨了妇女从性工作过渡到其他职业或工作的决定。该研究是一项随机临床试验(N = 542),在乌干达南部地区的 19 个艾滋病热点地区实施。参与者是根据其干预出席率(高/中/低出席率)选出的。访谈以研究地区广泛使用的语言卢干达语进行,以探讨影响妇女决定从性工作过渡到其他工作或职业的因素。本研究使用的主要访谈问题是:"有哪些因素可能会影响您是否会从性工作过渡到其他工作或职业?所有访谈均进行了录音、逐字记录并翻译成英文。使用 Dedoose 软件对数据进行主题分析。结果 参与者报告了三种主要的决定类型,包括考虑离开性工作、决定离开和继续从事性工作。访谈中新出现的主题可分为个人和结构层面的因素,以及离开性工作的障碍。个人层面的因素包括污名化、歧视和老龄化等问题,这些都是促使妇女决定离开性工作的因素。在结构层面,包括人与人之间的污名化和歧视(来自直系亲属和社区成员)、身体暴力和性暴力以及与收入有关的因素被确定为离开性工作的促进因素和障碍。结论 我们的研究强调了女性经济和社会工作者在向其他工作或职业过渡时的复杂决策过程。通过倡导针对女性经济和社会工作者所面临的各种挑战而量身定制的多方面干预措施和政策,我们的研究有助于采用更明智的方法来支持她们摆脱性工作。
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引用次数: 0
Midkine Attenuates Aβ Fibril Assembly and AmyloidPlaque Formation. Midkine 可减轻 Aβ 纤维的聚集和淀粉样斑块的形成
Pub Date : 2024-06-07 DOI: 10.21203/rs.3.rs-4361125/v1
Junmin Peng, Masihuz Zaman, Shu Yang, Ya Huang, Jay Yarbro, Zhen Wang, Danting Liu, Hadeer Soliman, Alex Hemphill, Sarah Harvey, Shondra Pruett-Miller, Valerie Stewart, Ajay Tanwar, Ravi Kalathur, Christy Grace, Martin Turk, Sagar Chittori, Yun Jiao, Zhiping Wu, Anthony High, Xusheng Wang, Geidy Serrano, Thomas Beach, Gang Yu, Yang Yang, Ping-Chung Chen

Proteomic profiling of Alzheimer's disease (AD) brains has identified numerous understudied proteins, including midkine (MDK), that are highly upregulated and correlated with Aβ since the early disease stage, but their roles in disease progression are not fully understood. Here we present that MDK attenuates Aβ assembly and influences amyloid formation in the 5xFAD amyloidosis mouse model. MDK protein mitigates fibril formation of both Aβ40 and Aβ42 peptides in Thioflavin T fluorescence assay, circular dichroism, negative stain electron microscopy, and NMR analysis. Knockout of Mdkgene in 5xFAD increases amyloid formation and microglial activation. Further comprehensive mass spectrometry-based profiling of whole proteome and aggregated proteome in these mouse models indicates significant accumulation of Aβ and Aβ-correlated proteins, along with microglial components. Thus, our structural and mouse model studies reveal a protective role of MDK in counteracting amyloid pathology in Alzheimer's disease.

对阿尔茨海默病(AD)大脑进行的蛋白质组学分析发现了许多未被充分研究的蛋白质,包括midkine(MDK),这些蛋白质自疾病早期就高度上调并与Aβ相关,但它们在疾病进展中的作用尚未完全明了。在这里,我们发现在 5xFAD 淀粉样变性小鼠模型中,MDK 可减轻 Aβ 的组装并影响淀粉样蛋白的形成。在硫黄素 T 荧光测定、圆二色法、负染色电子显微镜和核磁共振分析中,MDK 蛋白可减轻 Aβ40 和 Aβ42 肽的纤维形成。在 5xFAD 中敲除 Mdk 基因会增加淀粉样蛋白的形成和小胶质细胞的活化。在这些小鼠模型中,基于质谱的全蛋白质组和聚集蛋白质组的进一步综合分析表明,Aβ和Aβ相关蛋白以及小胶质细胞成分显著积累。因此,我们的结构和小鼠模型研究揭示了 MDK 在抵消阿尔茨海默病淀粉样病理中的保护作用。
{"title":"Midkine Attenuates Aβ Fibril Assembly and AmyloidPlaque Formation.","authors":"Junmin Peng, Masihuz Zaman, Shu Yang, Ya Huang, Jay Yarbro, Zhen Wang, Danting Liu, Hadeer Soliman, Alex Hemphill, Sarah Harvey, Shondra Pruett-Miller, Valerie Stewart, Ajay Tanwar, Ravi Kalathur, Christy Grace, Martin Turk, Sagar Chittori, Yun Jiao, Zhiping Wu, Anthony High, Xusheng Wang, Geidy Serrano, Thomas Beach, Gang Yu, Yang Yang, Ping-Chung Chen","doi":"10.21203/rs.3.rs-4361125/v1","DOIUrl":"10.21203/rs.3.rs-4361125/v1","url":null,"abstract":"<p><p>Proteomic profiling of Alzheimer's disease (AD) brains has identified numerous understudied proteins, including midkine (MDK), that are highly upregulated and correlated with Aβ since the early disease stage, but their roles in disease progression are not fully understood. Here we present that MDK attenuates Aβ assembly and influences amyloid formation in the 5xFAD amyloidosis mouse model. MDK protein mitigates fibril formation of both Aβ40 and Aβ42 peptides in Thioflavin T fluorescence assay, circular dichroism, negative stain electron microscopy, and NMR analysis. Knockout of <i>Mdk</i>gene in 5xFAD increases amyloid formation and microglial activation. Further comprehensive mass spectrometry-based profiling of whole proteome and aggregated proteome in these mouse models indicates significant accumulation of Aβ and Aβ-correlated proteins, along with microglial components. Thus, our structural and mouse model studies reveal a protective role of MDK in counteracting amyloid pathology in Alzheimer's disease.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177971/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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