首页 > 最新文献

Research square最新文献

英文 中文
Characterizing the Impact of the Covid-19 Pandemic on Adults with Autosomal Dominant Polycystic Kidney Disease: A Cross-Sectional Study. Covid-19大流行对常染色体显性多囊肾成人患者的影响:一项横断面研究
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4406167/v1
Alok Shetty, Anthony Atalla, Charalett Diggs, Terry Watnick, Stephen Seliger

Background: The Covid-19 pandemic greatly affected those with chronic diseases, impacting healthcare access and healthcare seeking behaviors. The impact of the pandemic on adults with Autosomal Dominant Polycystic Kidney Disease (ADPKD) has not been investigated.

Methods: Participants were recruited from a cohort of 239 ADPKD patients enrolled in a longitudinal study at the University of Maryland. Patients on renal replacement therapy were excluded. N = 66 patients participated in a phone questionnaire from June 2022-December 2022 about ADPKD-related complications, concern about contracting Covid-19, healthcare-seeking behaviors, and telehealth utilization before and after March 2020.

Results: N = 34 (51.5%) of participants reported a positive Covid-19 test result and N = 29 (44%) expressed high concern of contracting Covid-19. Those who avoided medical care at least once (N = 17, 25.8%) had similar demographics and ADPKD severity to those who did not, but reported greater telehealth utilization (88.2% vs. 42.9%, p = 0.002), greater use of non-prescribed medication for Covid-19 treatment or prevention (35.3% vs. 8.2%, p = 0.01), and were more likely to contract Covid-19 (76.5% vs. 42.9%, p = 0.02). Among the N = 53 who reported very good or excellent ADPKD disease management pre-pandemic, N = 47(89%) reported no significant change during the pandemic.

Conclusions: In this highly educated, high-income cohort with a mean age of 46.1 years, most people reported well-managed ADPKD prior to the pandemic. This may explain why less than half of participants expressed high concern for contracting Covid-19. Overall, there was no significant pandemic-related decline in self-reported ADPKD management, like due to excellent access to, and uptake of, telehealth services. Notably, 1 in 4 participants reported healthcare avoidant behavior, the effect of which may only be seen years from now. Future studies should investigate potential impacts of avoidant behaviors, as well as expand investigation to a more diverse cohort whose care may not have been as easily transitioned to telehealth.

背景 Covid-19 大流行极大地影响了慢性病患者,影响了他们获得医疗服务和寻求医疗服务的行为。该流行病对常染色体显性遗传多囊肾病(ADPKD)成人患者的影响尚未进行调查。方法 从马里兰大学一项纵向研究的 239 名 ADPKD 患者中招募参与者。正在接受肾脏替代治疗的患者除外。N = 66 名患者参加了 2022 年 6 月至 2022 年 12 月的电话问卷调查,内容涉及 ADPKD 相关并发症、对感染 Covid-19 的担忧、2020 年 3 月前后的医疗保健寻求行为和远程医疗利用情况。结果 N = 34(51.5%)名参与者报告了阳性的 Covid-19 检测结果,N = 29(44%)名参与者表示非常担心感染 Covid-19。至少有一次避免就医的参与者(17 人,占 25.8%)与没有避免就医的参与者具有相似的人口统计学特征和 ADPKD 严重程度,但报告了更多的远程医疗使用率(88.2% 对 42.9%,p = 0.002),更多使用非处方药物治疗或预防 Covid-19 (35.3% 对 8.2%,p = 0.01),并且更有可能感染 Covid-19(76.5% 对 42.9%,p = 0.02)。在大流行前报告 ADPKD 疾病管理非常好或优秀的 N = 53 人中,有 N = 47 人(89%)报告在大流行期间没有显著变化。结论 在这个平均年龄为 46.1 岁、受过高等教育的高收入人群中,大多数人在大流行前都报告说 ADPKD 得到了很好的控制。这也许可以解释为什么只有不到一半的参与者对感染 Covid-19 表示高度担忧。总体而言,自我报告的 ADPKD 管理水平并没有出现与大流行相关的明显下降,这可能是由于远程医疗服务的便捷性和使用率很高。值得注意的是,每 4 位参与者中就有 1 位报告了逃避医疗保健的行为,其影响可能要在数年后才能显现出来。未来的研究应该调查回避行为的潜在影响,并将调查范围扩大到更多样化的人群,因为他们的医疗服务可能不容易过渡到远程医疗。
{"title":"Characterizing the Impact of the Covid-19 Pandemic on Adults with Autosomal Dominant Polycystic Kidney Disease: A Cross-Sectional Study.","authors":"Alok Shetty, Anthony Atalla, Charalett Diggs, Terry Watnick, Stephen Seliger","doi":"10.21203/rs.3.rs-4406167/v1","DOIUrl":"10.21203/rs.3.rs-4406167/v1","url":null,"abstract":"<p><strong>Background: </strong>The Covid-19 pandemic greatly affected those with chronic diseases, impacting healthcare access and healthcare seeking behaviors. The impact of the pandemic on adults with Autosomal Dominant Polycystic Kidney Disease (ADPKD) has not been investigated.</p><p><strong>Methods: </strong>Participants were recruited from a cohort of 239 ADPKD patients enrolled in a longitudinal study at the University of Maryland. Patients on renal replacement therapy were excluded. N = 66 patients participated in a phone questionnaire from June 2022-December 2022 about ADPKD-related complications, concern about contracting Covid-19, healthcare-seeking behaviors, and telehealth utilization before and after March 2020.</p><p><strong>Results: </strong>N = 34 (51.5%) of participants reported a positive Covid-19 test result and N = 29 (44%) expressed high concern of contracting Covid-19. Those who avoided medical care at least once (N = 17, 25.8%) had similar demographics and ADPKD severity to those who did not, but reported greater telehealth utilization (88.2% vs. 42.9%, p = 0.002), greater use of non-prescribed medication for Covid-19 treatment or prevention (35.3% vs. 8.2%, p = 0.01), and were more likely to contract Covid-19 (76.5% vs. 42.9%, p = 0.02). Among the N = 53 who reported very good or excellent ADPKD disease management pre-pandemic, N = 47(89%) reported no significant change during the pandemic.</p><p><strong>Conclusions: </strong>In this highly educated, high-income cohort with a mean age of 46.1 years, most people reported well-managed ADPKD prior to the pandemic. This may explain why less than half of participants expressed high concern for contracting Covid-19. Overall, there was no significant pandemic-related decline in self-reported ADPKD management, like due to excellent access to, and uptake of, telehealth services. Notably, 1 in 4 participants reported healthcare avoidant behavior, the effect of which may only be seen years from now. Future studies should investigate potential impacts of avoidant behaviors, as well as expand investigation to a more diverse cohort whose care may not have been as easily transitioned to telehealth.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177968/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence of Oropharyngeal Candidiasis and distribution of Candida species among People Living with Human Immunodeficiency Virus in Africa: a systematic review and meta-analysis. 非洲人类免疫缺陷病毒感染者口咽念珠菌病患病率和念珠菌种类分布:系统回顾和荟萃分析。
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4534730/v1
Benson Musinguzi, Ekwaro A Obuku, Alison Annet Kinengyere, Regina Ndagire, Andrew Baguma, Alex Mwesigwa, Herbert Itabangi, Gerald Mboowa, Obondo James Sande, Beatrice Achan

Background: The incidence of oropharyngeal candidiasis among people living with human immunodeficiency virus in Africa is on the rise. Oropharyngeal candidiasis is mainly caused by C.albicans; however, a shift in the etiology towards non-Candida albicans species is increasing. In addition, there are variations in the epidemiological distribution of Candida species causing oropharyngeal candidiasis among people living with human immunodeficiency virus in Africa.

Objective: This review aimed to determine the prevalence of oropharyngeal candidiasis and the distribution of Candida species among people living with human immunodeficiency virus in Africa.

Materials and methods: This systematic review protocol was registered in the base PROSPERO database prior to its conduct (CRD42021254473). The Preferred Reporting Items for Systematic Reviews and Meta-Analyses Protocol guidelines (PRISMA-P) were followed for this study. The PubMed, Scopus and EMBASE databases were searched to identify published studies published between 1st January 2000 and 8th October 2022. The eligible studies were included in the meta-analysis and analyzed using a random effects model. The risk of bias of the included studies was assessed using the Joanna Briggs Institute quality assessment tool for prevalence studies.

Results: The database search yielded 370 titles from PubMed (n=192), EMBASE (n=162) and SCOPUS (n=16). Fourteen studies with a total of 3,863 participants were included in the meta-analysis. The pooled prevalence of oropharyngeal candidiasis was 49.0% (95% CI: 37% - 62%). A total of 2,688 Candida isolates were reported; approximately 76.6% (n=2,060) were C. albicans, and 21.7% (n=582) were non-C. albicans. Among the non-Candida albicans species, C. glabrata was the most common isolate (29.6%), followed by C. tropicalis (27.7%), C. krusei (17.0%), C. parapsilosis (8.1%) and C. dubliniensis (5.2%). Out of 14 studies, 7 (50.0%) had a low risk of bias, 5 (35.7%) had a moderate risk of bias, and 2 (14.3%) had a high risk of bias.

Conclusion: Almost half of people living with HIV in Africa have oropharyngeal candidiasis, and C. albicans remains the most frequent cause of oropharyngeal candidiasis.

背景:在非洲,人类免疫缺陷病毒感染者口咽念珠菌病的发病率呈上升趋势。口咽念珠菌病主要由白色念珠菌引起,但病因正逐渐转向非白色念珠菌。此外,在非洲人体免疫缺陷病毒感染者中,引起口咽念珠菌病的念珠菌种类在流行病学分布上存在差异。目的:本综述旨在确定非洲人类免疫缺陷病毒感染者中口咽念珠菌病的发病率和念珠菌菌种的分布情况。材料与方法:本系统综述方案在实施前已在 PROSPERO 基础数据库中注册(CRD42021254473)。本研究遵循《系统综述和元分析首选报告项目协议》(PRISMA-P)指南。研究人员检索了 PubMed、Scopus 和 EMBASE 数据库,以确定 2000 年 1 月 1 日至 2022 年 10 月 8 日期间发表的研究。符合条件的研究被纳入荟萃分析,并采用随机效应模型进行分析。采用乔安娜-布里格斯研究所的流行病学研究质量评估工具对纳入研究的偏倚风险进行了评估。结果通过数据库检索,从 PubMed(192 篇)、EMBASE(162 篇)和 SCOPUS(16 篇)中获得了 370 个标题。荟萃分析纳入了 14 项研究,共有 3,863 名参与者。口咽念珠菌病的合计患病率为 49.0%(95% CI:37% - 62%)。共报告了 2,688 株念珠菌分离物,其中约 76.6%(n=2,060)为白念珠菌,21.7%(n=582)为非白念珠菌。在非白色念珠菌物种中,最常见的分离物是格拉布氏念珠菌(29.6%),其次是热带念珠菌(27.7%)、克鲁塞念珠菌(17.0%)、副丝状念珠菌(8.1%)和杜布里尼念珠菌(5.2%)。在14项研究中,7项(50.0%)存在低偏倚风险,5项(35.7%)存在中度偏倚风险,2项(14.3%)存在高度偏倚风险。结论:非洲近一半的艾滋病毒感染者患有口咽念珠菌病,白念珠菌仍是口咽念珠菌病最常见的病因。
{"title":"Prevalence of Oropharyngeal Candidiasis and distribution of <i>Candida</i> species among People Living with Human Immunodeficiency Virus in Africa: a systematic review and meta-analysis.","authors":"Benson Musinguzi, Ekwaro A Obuku, Alison Annet Kinengyere, Regina Ndagire, Andrew Baguma, Alex Mwesigwa, Herbert Itabangi, Gerald Mboowa, Obondo James Sande, Beatrice Achan","doi":"10.21203/rs.3.rs-4534730/v1","DOIUrl":"10.21203/rs.3.rs-4534730/v1","url":null,"abstract":"<p><strong>Background: </strong>The incidence of oropharyngeal candidiasis among people living with human immunodeficiency virus in Africa is on the rise. Oropharyngeal candidiasis is mainly caused by <i>C.albicans</i>; however, a shift in the etiology towards non-<i>Candida albicans</i> species is increasing. In addition, there are variations in the epidemiological distribution of <i>Candida</i> species causing oropharyngeal candidiasis among people living with human immunodeficiency virus in Africa.</p><p><strong>Objective: </strong>This review aimed to determine the prevalence of oropharyngeal candidiasis and the distribution of <i>Candida</i> species among people living with human immunodeficiency virus in Africa.</p><p><strong>Materials and methods: </strong>This systematic review protocol was registered in the base PROSPERO database prior to its conduct (CRD42021254473). The Preferred Reporting Items for Systematic Reviews and Meta-Analyses Protocol guidelines (PRISMA-P) were followed for this study. The PubMed, Scopus and EMBASE databases were searched to identify published studies published between 1<sup>st</sup> January 2000 and 8<sup>th</sup> October 2022. The eligible studies were included in the meta-analysis and analyzed using a random effects model. The risk of bias of the included studies was assessed using the Joanna Briggs Institute quality assessment tool for prevalence studies.</p><p><strong>Results: </strong>The database search yielded 370 titles from PubMed (n=192), EMBASE (n=162) and SCOPUS (n=16). Fourteen studies with a total of 3,863 participants were included in the meta-analysis. The pooled prevalence of oropharyngeal candidiasis was 49.0% (95% CI: 37% - 62%). A total of 2,688 <i>Candida</i> isolates were reported; approximately 76.6% (n=2,060) were <i>C. albicans</i>, and 21.7% (n=582) were non-<i>C. albicans</i>. Among the non-<i>Candida albicans</i> species, <i>C</i>. <i>glabrata</i> was the most common isolate (29.6%), followed by <i>C</i>. <i>tropicalis</i> (27.7%), <i>C</i>. <i>krusei</i> (17.0%), <i>C</i>. <i>parapsilosis</i> (8.1%) and <i>C</i>. <i>dubliniensis</i> (5.2%). Out of 14 studies, 7 (50.0%) had a low risk of bias, 5 (35.7%) had a moderate risk of bias, and 2 (14.3%) had a high risk of bias.</p><p><strong>Conclusion: </strong>Almost half of people living with HIV in Africa have oropharyngeal candidiasis, and <i>C. albicans</i> remains the most frequent cause of oropharyngeal candidiasis.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177986/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332780","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The Neural Bases of Language Processing During Social and Non-Social Contexts: A fNIRS Study of Autistic and Neurotypical Preschool-Aged Children. 社交和非社交语境中语言处理的神经基础:自闭症和神经畸形学龄前儿童的 fNIRS 研究。
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4450882/v1
Meredith Pecukonis, Javier Gerson, Hailey Gustafson-Alm, Maegan Wood, Meryem Yücel, David Boas, Helen Tager-Flusberg

Background: Little is known about how the brains of autistic children process language during real-world "social contexts," despite the fact that challenges with language, communication, and social interaction are core features of Autism Spectrum Disorder (ASD).

Methods: We investigated the neural bases of language processing during social and non-social contexts in a sample of N=20 autistic and N=20 neurotypical (NT) preschool-aged children, 3 to 6 years old. Functional near-infrared spectroscopy (fNIRS) was used to measure children's brain response to "live language" spoken by a live experimenter during an in-person social context (i.e., book reading), and "recorded language" played via an audio recording during a non-social context (i.e., screen time). We examined within-group and between-group differences in the strength and localization of brain response to live language and recorded language, as well as correlations between children's brain response and language skills measured by the Preschool Language Scales.

Results: In the NT group, brain response to live language was greater than brain response to recorded language in the right temporal parietal junction (TPJ). In the ASD group, the strength of brain response did not differ between conditions. The ASD group showed greater brain response to recorded language than the NT group in the right inferior and middle frontal gyrus (IMFG). Across groups, children's language skills were negatively associated with brain response to recorded language in the right IMFG, suggesting that processing recorded language required more cognitive effort for children with lower language skills. Children's language skills were also positively associated with the difference in brain response between conditions in the right TPJ, demonstrating that children who showed a greater difference in brain response to live language versus recorded language had higher language skills.

Limitations: Findings should be considered preliminary until they are replicated in a larger sample.

Conclusions: Findings suggest that the brains of NT children, but not autistic children, process language differently during social and non-social contexts. Individual differences in how the brain processes language during social and non-social contexts may help to explain why language skills are so variable across children with and without autism.

背景:尽管语言、沟通和社会交往方面的挑战是自闭症谱系障碍(ASD)的核心特征,但人们对自闭症儿童的大脑在真实世界的 "社会环境 "中如何处理语言却知之甚少。研究方法我们对 N = 20 名自闭症儿童和 N = 20 名神经典型(NT)学龄前儿童(3 至 6 岁)在社交和非社交环境中语言处理的神经基础进行了调查。我们使用功能性近红外光谱(fNIRS)测量了儿童在亲身社交情境(即阅读书籍)中对现场实验者所说的 "现场语言 "以及在非社交情境(即屏幕时间)中通过录音播放的 "录制语言 "的大脑反应。我们研究了大脑对现场语言和录制语言的反应强度和定位的组内和组间差异,以及儿童大脑反应与学前语言量表测量的语言技能之间的相关性。结果显示在 NT 组中,右侧颞顶叶交界处(TPJ)对现场语言的大脑反应强于对录制语言的大脑反应。在 ASD 组中,大脑反应的强度在不同条件下没有差异。在右侧额叶下回和中回(IMFG),ASD 组对录制语言的大脑反应强于 NT 组。在各组中,儿童的语言技能与大脑对右侧 IMFG 中录制的语言的反应呈负相关,这表明语言技能较低的儿童在处理录制的语言时需要付出更多的认知努力。儿童的语言技能还与右侧 TPJ 在不同条件下的大脑反应差异呈正相关,这表明对现场语言与录制语言的大脑反应差异更大的儿童具有更高的语言技能。局限性:在更大样本中重复研究之前,研究结果应被视为初步结果。结论:研究结果表明,NT 儿童(而非自闭症儿童)的大脑在社交和非社交环境中处理语言的方式不同。大脑在社交和非社交语境中处理语言的方式存在个体差异,这可能有助于解释为什么自闭症儿童和非自闭症儿童的语言技能如此不同。
{"title":"The Neural Bases of Language Processing During Social and Non-Social Contexts: A fNIRS Study of Autistic and Neurotypical Preschool-Aged Children.","authors":"Meredith Pecukonis, Javier Gerson, Hailey Gustafson-Alm, Maegan Wood, Meryem Yücel, David Boas, Helen Tager-Flusberg","doi":"10.21203/rs.3.rs-4450882/v1","DOIUrl":"10.21203/rs.3.rs-4450882/v1","url":null,"abstract":"<p><strong>Background: </strong>Little is known about how the brains of autistic children process language during real-world \"social contexts,\" despite the fact that challenges with language, communication, and social interaction are core features of Autism Spectrum Disorder (ASD).</p><p><strong>Methods: </strong>We investigated the neural bases of language processing during social and non-social contexts in a sample of <i>N</i>=20 autistic and <i>N</i>=20 neurotypical (NT) preschool-aged children, 3 to 6 years old. Functional near-infrared spectroscopy (fNIRS) was used to measure children's brain response to \"live language\" spoken by a live experimenter during an in-person social context (i.e., book reading), and \"recorded language\" played via an audio recording during a non-social context (i.e., screen time). We examined within-group and between-group differences in the strength and localization of brain response to live language and recorded language, as well as correlations between children's brain response and language skills measured by the Preschool Language Scales.</p><p><strong>Results: </strong>In the NT group, brain response to live language was greater than brain response to recorded language in the right temporal parietal junction (TPJ). In the ASD group, the strength of brain response did not differ between conditions. The ASD group showed greater brain response to recorded language than the NT group in the right inferior and middle frontal gyrus (IMFG). Across groups, children's language skills were negatively associated with brain response to recorded language in the right IMFG, suggesting that processing recorded language required more cognitive effort for children with lower language skills. Children's language skills were also positively associated with the difference in brain response between conditions in the right TPJ, demonstrating that children who showed a greater difference in brain response to live language versus recorded language had higher language skills.</p><p><strong>Limitations: </strong>Findings should be considered preliminary until they are replicated in a larger sample.</p><p><strong>Conclusions: </strong>Findings suggest that the brains of NT children, but not autistic children, process language differently during social and non-social contexts. Individual differences in how the brain processes language during social and non-social contexts may help to explain why language skills are so variable across children with and without autism.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177967/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332838","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Targeting of SUMOylation leads to cBAF complex stabilization and disruption of the SS18::SSX transcriptome in Synovial Sarcoma. 靶向 SUMOylation 可导致滑膜肉瘤中 cBAF 复合物的稳定和 SS18::SSX 转录组的破坏。
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4362092/v1
Konstantinos V Floros, Carter K Fairchild, Jinxiu Li, Kun Zhang, Jane L Roberts, Richard Kurupi, Bin Hu, Vita Kraskauskiene, Nayyerehalsadat Hosseini, Shanwei Shen, Melissa M Inge, Kyllie Smith-Fry, Li Li, Afroditi Sotiriou, Krista M Dalton, Asha Jose, Elsamani I Abdelfadiel, Yanli Xing, Ronald D Hill, Jamie M Slaughter, Mayuri Shende, Madelyn R Lorenz, Mandy R Hinojosa, Benjamin R Belvin, Zhao Lai, Sosipatros A Boikos, Angeliki M Stamatouli, Janina P Lewis, Masoud H Manjili, Kristoffer Valerie, Renfeng Li, Ana Banito, Andrew Poklepovic, Jennifer E Koblinski, Trevor Siggers, Mikhail G Dozmorov, Kevin B Jones, Senthil K Radhakrishnan, Anthony C Faber

Synovial Sarcoma (SS) is driven by the SS18::SSX fusion oncoprotein and is ultimately refractory to therapeutic approaches. SS18::SSX alters ATP-dependent chromatin remodeling BAF (mammalian SWI/SNF) complexes, leading to the degradation of canonical (cBAF) complex and amplified presence of an SS18::SSX-containing non-canonical BAF (ncBAF or GBAF) that drives an SS-specific transcription program and tumorigenesis. We demonstrate that SS18::SSX activates the SUMOylation program and SSs are sensitive to the small molecule SAE1/2 inhibitor, TAK-981. Mechanistically, TAK-981 de-SUMOylates the cBAF subunit SMARCE1, stabilizing and restoring cBAF on chromatin, shifting away from SS18::SSX-ncBAF-driven transcription, associated with DNA damage and cell death and resulting in tumor inhibition across both human and mouse SS tumor models. TAK-981 synergized with cytotoxic chemotherapy through increased DNA damage, leading to tumor regression. Targeting the SUMOylation pathway in SS restores cBAF complexes and blocks the SS18::SSX-ncBAF transcriptome, identifying a therapeutic vulnerability in SS, positioning the in-clinic TAK-981 to treat SS.

滑膜肉瘤(SS)由SS18::SSX融合肿瘤蛋白驱动,最终难治。SS18::SSX 会改变 ATP 依赖性染色质重塑 BAF(哺乳动物 SWI/SNF)复合物,导致规范(cBAF)复合物降解,并扩大含有 SS18::SSX 的非规范 BAF(ncBAF 或 GBAF)的存在,从而驱动 SS 特异性转录程序和肿瘤发生。我们证明,SS18::SSX 激活了 SUMOylation 程序,SS 对小分子 SAE1/2 抑制剂 TAK-981 敏感。从机理上讲,TAK-981 可使 cBAF 亚基 SMARCE1 去 SUMOyl 化,从而稳定和恢复染色质上的 cBAF,摆脱 SS18::SSX-ncBAF 驱动的转录(与 DNA 损伤和细胞死亡有关),并在人类和小鼠 SS 肿瘤模型中产生肿瘤抑制作用。TAK-981 通过增加 DNA 损伤与细胞毒性化疗协同作用,导致肿瘤消退。靶向 SS 中的 SUMOylation 通路可恢复 cBAF 复合物并阻断 SS18::SSX-ncBAF 转录组,从而确定 SS 的治疗弱点,使临床中的 TAK-981 能够治疗 SS。
{"title":"Targeting of SUMOylation leads to cBAF complex stabilization and disruption of the SS18::SSX transcriptome in Synovial Sarcoma.","authors":"Konstantinos V Floros, Carter K Fairchild, Jinxiu Li, Kun Zhang, Jane L Roberts, Richard Kurupi, Bin Hu, Vita Kraskauskiene, Nayyerehalsadat Hosseini, Shanwei Shen, Melissa M Inge, Kyllie Smith-Fry, Li Li, Afroditi Sotiriou, Krista M Dalton, Asha Jose, Elsamani I Abdelfadiel, Yanli Xing, Ronald D Hill, Jamie M Slaughter, Mayuri Shende, Madelyn R Lorenz, Mandy R Hinojosa, Benjamin R Belvin, Zhao Lai, Sosipatros A Boikos, Angeliki M Stamatouli, Janina P Lewis, Masoud H Manjili, Kristoffer Valerie, Renfeng Li, Ana Banito, Andrew Poklepovic, Jennifer E Koblinski, Trevor Siggers, Mikhail G Dozmorov, Kevin B Jones, Senthil K Radhakrishnan, Anthony C Faber","doi":"10.21203/rs.3.rs-4362092/v1","DOIUrl":"10.21203/rs.3.rs-4362092/v1","url":null,"abstract":"<p><p>Synovial Sarcoma (SS) is driven by the SS18::SSX fusion oncoprotein and is ultimately refractory to therapeutic approaches. SS18::SSX alters ATP-dependent chromatin remodeling BAF (mammalian SWI/SNF) complexes, leading to the degradation of canonical (cBAF) complex and amplified presence of an SS18::SSX-containing non-canonical BAF (ncBAF or GBAF) that drives an SS-specific transcription program and tumorigenesis. We demonstrate that SS18::SSX activates the SUMOylation program and SSs are sensitive to the small molecule SAE1/2 inhibitor, TAK-981. Mechanistically, TAK-981 de-SUMOylates the cBAF subunit SMARCE1, stabilizing and restoring cBAF on chromatin, shifting away from SS18::SSX-ncBAF-driven transcription, associated with DNA damage and cell death and resulting in tumor inhibition across both human and mouse SS tumor models. TAK-981 synergized with cytotoxic chemotherapy through increased DNA damage, leading to tumor regression. Targeting the SUMOylation pathway in SS restores cBAF complexes and blocks the SS18::SSX-ncBAF transcriptome, identifying a therapeutic vulnerability in SS, positioning the in-clinic TAK-981 to treat SS.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177989/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332796","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Key features of the innate immune response is mediated by the immunoproteasome in microglia. 先天性免疫反应的主要特征是由小胶质细胞中的免疫蛋白酶体介导的。
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4467983/v1
Salman Izadjoo, Kasey E Moritz, Guzal Khayrullina, Elizabeth M Bergman, Brendan M Melvin, Matthew W Stinson, Summer G Paulson, Nikki M McCormack, Kelsey N Anderson, Lunndon A Lewis, Jeremy D Rotty, Barrington G Burnett

Microglia are the resident immune cells of the central nervous system (CNS). We and others have shown that the inflammatory response of microglia is partially regulated by the immunoproteasome, an inducible form of the proteasome responsible for the generation of major histocompatibility complex (MHC) class I epitopes. While the role of the proteasome in the adaptive immune system is well established, emerging evidence suggests the immunoproteasome may have discrete functions in the innate immune response. Here, we show that inhibiting the immunoproteasome reduces the IFNγ-dependent induction of complement activator C1q, suppresses phagocytosis, and alters the cytokine expression profile in a microglial cell line and microglia derived from human inducible pluripotent stem cells. Moreover, we show that the immunoproteasome regulates the degradation of IκBα, a modulator of NF-κB signaling. Finally, we demonstrate that NADH prevents induction of the immunoproteasome, representing a potential pathway to suppress immunoproteasome-dependent immune responses.

小胶质细胞是中枢神经系统(CNS)的常驻免疫细胞。我们和其他人已经证明,小胶质细胞的炎症反应部分受免疫蛋白酶体的调节,免疫蛋白酶体是蛋白酶体的一种诱导形式,负责生成主要组织相容性复合体(MHC)I类表位。虽然蛋白酶体在适应性免疫系统中的作用已得到公认,但新出现的证据表明,免疫蛋白酶体在先天性免疫反应中可能具有不同的功能。在这里,我们发现抑制免疫蛋白酶体可减少 IFNγ 依赖性诱导的补体激活剂 C1q,抑制吞噬作用,并改变小胶质细胞系和来源于人类诱导多能干细胞的小胶质细胞的细胞因子表达谱。此外,我们还发现免疫蛋白酶体能调节 IκBα 的降解,而 IκBα 是 NF-κB 信号传导的调节因子。最后,我们证明 NADH 能阻止免疫蛋白酶体的诱导,这是抑制免疫蛋白酶体依赖性免疫反应的潜在途径。
{"title":"Key features of the innate immune response is mediated by the immunoproteasome in microglia.","authors":"Salman Izadjoo, Kasey E Moritz, Guzal Khayrullina, Elizabeth M Bergman, Brendan M Melvin, Matthew W Stinson, Summer G Paulson, Nikki M McCormack, Kelsey N Anderson, Lunndon A Lewis, Jeremy D Rotty, Barrington G Burnett","doi":"10.21203/rs.3.rs-4467983/v1","DOIUrl":"10.21203/rs.3.rs-4467983/v1","url":null,"abstract":"<p><p>Microglia are the resident immune cells of the central nervous system (CNS). We and others have shown that the inflammatory response of microglia is partially regulated by the immunoproteasome, an inducible form of the proteasome responsible for the generation of major histocompatibility complex (MHC) class I epitopes. While the role of the proteasome in the adaptive immune system is well established, emerging evidence suggests the immunoproteasome may have discrete functions in the innate immune response. Here, we show that inhibiting the immunoproteasome reduces the IFNγ-dependent induction of complement activator C1q, suppresses phagocytosis, and alters the cytokine expression profile in a microglial cell line and microglia derived from human inducible pluripotent stem cells. Moreover, we show that the immunoproteasome regulates the degradation of IκBα, a modulator of NF-κB signaling. Finally, we demonstrate that NADH prevents induction of the immunoproteasome, representing a potential pathway to suppress immunoproteasome-dependent immune responses.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177974/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Structures and Strategies for Retaining an International Pediatric Cohort from Birth: Lessons from The Environmental Determinants of Diabetes in the Young (TEDDY) Study. 从出生开始保留国际儿科队列的结构和策略:青少年糖尿病的环境决定因素(TEDDY)研究的启示。
Pub Date : 2024-06-06 DOI: 10.21203/rs.3.rs-4421364/v1
Patricia Gesualdo, Jessica Melin, Rachel Karban, Claire Crouch, Michael Killian, Diane Hopkins, Annika Adamsson, Joanna Stock, Suzanne Bennett Johnson, Judith Baxter

Background: Retention of study participants in observational studies is essential to maintaining the representativeness of the population, minimizing selection bias, and assuring sufficient statistical power. The aim of this report is to describe the structures and strategies used to retain participants in The Environmental Determinants of Diabetes in the Young (TEDDY) Study, an observational study of children at increased genetic risk for type 1 diabetes followed in an intense protocol with frequent clinic visits from birth until age 15.

Methods: A systematic review of methodologies used to retain research subjects identified four domains: barrier reduction strategies; community building strategies; follow-up/reminder strategies; and tracing strategies. Independent reviewers categorized the retention strategies implemented by the TEDDY Study into each of these domains. Strategies not fitting into any of these categories were placed into a fifth category unique to TEDDY.

Results: TEDDY identified over one hundred retention strategies used during the 15 years of follow-up; most could be categorized in these domains. Those unique to TEDDY included (1) study organization and structures to support retention; (2) efforts to meet the changing developmental needs of the TEDDY population, (3) implementation of efforts to address protocol challenges in real-time; and (4) employment of a re-engagement protocol for those who had dropped out of the study.

Conclusion: Pediatric cohort studies should include strategies, structures, and resources addressing retention at the study's initiation. It is recommended that child and parent engagement in addition to the developmental needs of the child be an integrated focus of all strategies. Putting mechanisms in place to address protocol and retention challenges in real time would facilitate effectively addressing challenges as they arise.

Trial registration: ClinicalTrials.gov Identifier: NCT00279318.

背景:留住观察性研究的参与者对于保持研究对象的代表性、最大限度地减少选择偏差和确保足够的统计能力至关重要。本报告旨在介绍 "青少年糖尿病的环境决定因素(TEDDY)研究 "中留住参与者所采用的结构和策略。该研究是一项观察性研究,针对 1 型糖尿病遗传风险增加的儿童,从出生到 15 岁期间,通过频繁的门诊访问进行密集跟踪。研究方法对用于留住研究对象的方法进行了系统回顾,确定了四个领域:减少障碍策略、社区建设策略、随访/提醒策略和追踪策略。独立评审员将 TEDDY 研究实施的留住受试者策略分别归入上述四个领域。不属于上述任何一类的策略被归入 TEDDY 独特的第五类。结果:在 15 年的跟踪调查中,TEDDY 发现了一百多种留住学生的策略,其中大部分可以归入这些领域。TEDDY 独有的策略包括:(1) 支持保留的研究组织和结构;(2) 努力满足 TEDDY 群体不断变化的发展需求;(3) 努力实时处理协议挑战;(4) 为那些退出研究的人采用重新参与协议。结论儿科队列研究应包括在研究开始时解决保留问题的策略、结构和资源。建议将儿童和家长的参与以及儿童的发展需求作为所有策略的综合重点。建立实时应对方案和保留率挑战的机制将有助于有效解决出现的挑战。试验注册:ClinicalTrials.gov Identifier:NCT00279318。
{"title":"Structures and Strategies for Retaining an International Pediatric Cohort from Birth: Lessons from The Environmental Determinants of Diabetes in the Young (TEDDY) Study.","authors":"Patricia Gesualdo, Jessica Melin, Rachel Karban, Claire Crouch, Michael Killian, Diane Hopkins, Annika Adamsson, Joanna Stock, Suzanne Bennett Johnson, Judith Baxter","doi":"10.21203/rs.3.rs-4421364/v1","DOIUrl":"10.21203/rs.3.rs-4421364/v1","url":null,"abstract":"<p><strong>Background: </strong>Retention of study participants in observational studies is essential to maintaining the representativeness of the population, minimizing selection bias, and assuring sufficient statistical power. The aim of this report is to describe the structures and strategies used to retain participants in The Environmental Determinants of Diabetes in the Young (TEDDY) Study, an observational study of children at increased genetic risk for type 1 diabetes followed in an intense protocol with frequent clinic visits from birth until age 15.</p><p><strong>Methods: </strong>A systematic review of methodologies used to retain research subjects identified four domains: barrier reduction strategies; community building strategies; follow-up/reminder strategies; and tracing strategies. Independent reviewers categorized the retention strategies implemented by the TEDDY Study into each of these domains. Strategies not fitting into any of these categories were placed into a fifth category unique to TEDDY.</p><p><strong>Results: </strong>TEDDY identified over one hundred retention strategies used during the 15 years of follow-up; most could be categorized in these domains. Those unique to TEDDY included (1) study organization and structures to support retention; (2) efforts to meet the changing developmental needs of the TEDDY population, (3) implementation of efforts to address protocol challenges in real-time; and (4) employment of a re-engagement protocol for those who had dropped out of the study.</p><p><strong>Conclusion: </strong>Pediatric cohort studies should include strategies, structures, and resources addressing retention at the study's initiation. It is recommended that child and parent engagement in addition to the developmental needs of the child be an integrated focus of all strategies. Putting mechanisms in place to address protocol and retention challenges in real time would facilitate effectively addressing challenges as they arise.</p><p><strong>Trial registration: </strong>ClinicalTrials.gov Identifier: NCT00279318.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177994/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332794","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Selective classification with machine learning uncertainty estimates improves ACS prediction: A retrospective study in the prehospital setting. 利用机器学习不确定性估计进行选择性分类可改善 ACS 预测:院前环境中的回顾性研究。
Pub Date : 2024-06-05 DOI: 10.21203/rs.3.rs-4437265/v1
Juan Jose Garcia, Rebecca Kitzmiller, Ashok Krishnamurthy, Jessica K Zégre-Hemsey

Accurate identification of acute coronary syndrome (ACS) in the prehospital sestting is important for timely treatments that reduce damage to the compromised myocardium. Current machine learning approaches lack sufficient performance to safely rule-in or rule-out ACS. Our goal is to identify a method that bridges this gap. To do so, we retrospectively evaluate two promising approaches, an ensemble of gradient boosted decision trees (GBDT) and selective classification (SC) on consecutive patients transported by ambulance to the ED with chest pain and/or anginal equivalents. On the task of ACS classification with 23 prehospital covariates, we found the fusion of the two (GBDT+SC) improves the best reported sensitivity and specificity by 8% and 23% respectively. Accordingly, GBDT+SC is safer than current machine learning approaches to rule-in and rule-out of ACS in the prehospital setting.

在院前环境中准确识别急性冠状动脉综合征(ACS)对于及时治疗以减少对受损心肌的损害非常重要。目前的机器学习方法缺乏足够的性能,无法安全地排除 ACS。我们的目标是找出一种能弥补这一不足的方法。为此,我们对两种有前途的方法进行了回顾性评估,即梯度提升决策树(GBDT)和选择性分类(SC)的组合,评估对象是由救护车送往急诊室的连续胸痛和/或心绞痛患者。在使用 23 个院前协变量进行 ACS 分类的任务中,我们发现两者的融合(GBDT+SC)可将最佳报告灵敏度和特异性分别提高 8% 和 23%。因此,在院前环境中,GBDT+SC 比目前的机器学习方法更能安全地排除 ACS。
{"title":"Selective classification with machine learning uncertainty estimates improves ACS prediction: A retrospective study in the prehospital setting.","authors":"Juan Jose Garcia, Rebecca Kitzmiller, Ashok Krishnamurthy, Jessica K Zégre-Hemsey","doi":"10.21203/rs.3.rs-4437265/v1","DOIUrl":"10.21203/rs.3.rs-4437265/v1","url":null,"abstract":"<p><p>Accurate identification of acute coronary syndrome (ACS) in the prehospital sestting is important for timely treatments that reduce damage to the compromised myocardium. Current machine learning approaches lack sufficient performance to safely rule-in or rule-out ACS. Our goal is to identify a method that bridges this gap. To do so, we retrospectively evaluate two promising approaches, an ensemble of gradient boosted decision trees (GBDT) and selective classification (SC) on consecutive patients transported by ambulance to the ED with chest pain and/or anginal equivalents. On the task of ACS classification with 23 prehospital covariates, we found the fusion of the two (GBDT+SC) improves the best reported sensitivity and specificity by 8% and 23% respectively. Accordingly, GBDT+SC is safer than current machine learning approaches to rule-in and rule-out of ACS in the prehospital setting.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177980/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332782","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intrinsic Gata4 expression sensitizes the aortic root to dilation in a Loeys-Dietz syndrome mouse model. 在 Loeys-Dietz 综合征小鼠模型中,Gata4 的内在表达使主动脉根部对扩张敏感。
Pub Date : 2024-06-05 DOI: 10.21203/rs.3.rs-4420617/v1
Emily E Bramel, Wendy A Espinoza Camejo, Tyler J Creamer, Leda Restrepo, Muzna Saqib, Rustam Bagirzadeh, Anthony Zeng, Jacob T Mitchell, Genevieve L Stein-O'Brien, Albert J Pedroza, Michael P Fischbein, Harry C Dietz, Elena Gallo MacFarlane

Loeys-Dietz syndrome (LDS) is an aneurysm disorder caused by mutations that decrease transforming growth factor-β (TGF-β) signaling. Although aneurysms develop throughout the arterial tree, the aortic root is a site of heightened risk. To identify molecular determinants of this vulnerability, we investigated the heterogeneity of vascular smooth muscle cells (VSMCs) in the aorta of Tgfbr1 M318R/+ LDS mice by single cell and spatial transcriptomics. Reduced expression of components of the extracellular matrix-receptor apparatus and upregulation of stress and inflammatory pathways were observed in all LDS VSMCs. However, regardless of genotype, a subset of Gata4-expressing VSMCs predominantly located in the aortic root intrinsically displayed a less differentiated, proinflammatory profile. A similar population was also identified among aortic VSMCs in a human scRNAseq dataset. Postnatal VSMC-specific Gata4 deletion reduced aortic root dilation in LDS mice, suggesting that this factor sensitizes the aortic root to the effects of impaired TGF-β signaling.

洛伊-迪茨综合征(Loeys-Dietz Syndrome,LDS)是一种动脉瘤疾病,是由于基因突变导致转化生长因子-β(TGF-β)信号传导能力下降引起的。虽然动脉瘤发生于整个动脉树,但主动脉根部的风险更高。为了确定这种脆弱性的分子决定因素,我们通过单细胞和空间转录组学研究了 Tgfbr1 M318R/+ LDS 小鼠主动脉中血管平滑肌细胞(VSMC)的异质性。在所有 LDS VSMC 中都观察到细胞外基质-受体装置成分的表达减少以及应激和炎症通路的上调。然而,无论基因型如何,主要位于主动脉根部的表达 Gata4 的 VSMC 亚群本质上显示出分化程度较低的促炎特征。在人类 scRNAseq 数据集中的主动脉 VSMCs 中也发现了类似的群体。出生后 VSMC 特异性 Gata4 缺失可减少 LDS 小鼠主动脉根部的扩张,这表明该因子可使主动脉根部对 TGF-β 信号传导受损的影响敏感。
{"title":"Intrinsic <i>Gata4</i> expression sensitizes the aortic root to dilation in a Loeys-Dietz syndrome mouse model.","authors":"Emily E Bramel, Wendy A Espinoza Camejo, Tyler J Creamer, Leda Restrepo, Muzna Saqib, Rustam Bagirzadeh, Anthony Zeng, Jacob T Mitchell, Genevieve L Stein-O'Brien, Albert J Pedroza, Michael P Fischbein, Harry C Dietz, Elena Gallo MacFarlane","doi":"10.21203/rs.3.rs-4420617/v1","DOIUrl":"10.21203/rs.3.rs-4420617/v1","url":null,"abstract":"<p><p>Loeys-Dietz syndrome (LDS) is an aneurysm disorder caused by mutations that decrease transforming growth factor-β (TGF-β) signaling. Although aneurysms develop throughout the arterial tree, the aortic root is a site of heightened risk. To identify molecular determinants of this vulnerability, we investigated the heterogeneity of vascular smooth muscle cells (VSMCs) in the aorta of <i>Tgfbr1</i> <sup><i>M318R</i>/+</sup> LDS mice by single cell and spatial transcriptomics. Reduced expression of components of the extracellular matrix-receptor apparatus and upregulation of stress and inflammatory pathways were observed in all LDS VSMCs. However, regardless of genotype, a subset of <i>Gata4</i>-expressing VSMCs predominantly located in the aortic root intrinsically displayed a less differentiated, proinflammatory profile. A similar population was also identified among aortic VSMCs in a human scRNAseq dataset. Postnatal VSMC-specific <i>Gata4</i> deletion reduced aortic root dilation in LDS mice, suggesting that this factor sensitizes the aortic root to the effects of impaired TGF-β signaling.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177966/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332759","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multi-Modality Deep Infarct: Non-invasive identification of infarcted myocardium using composite in-silico-human data learning. 多模态深度梗塞:利用硅内-人类复合数据学习无创识别梗死心肌。
Pub Date : 2024-06-05 DOI: 10.21203/rs.3.rs-4468678/v1
Rana Raza Mehdi, Nikhil Kadivar, Tanmay Mukherjee, Emilio A Mendiola, Dipan J Shah, George Karniadakis, Reza Avazmohammadi

Myocardial infarction (MI) continues to be a leading cause of death worldwide. The precise quantification of infarcted tissue is crucial to diagnosis, therapeutic management, and post-MI care. Late gadolinium enhancement-cardiac magnetic resonance (LGE-CMR) is regarded as the gold standard for precise infarct tissue localization in MI patients. A fundamental limitation of LGE-CMR is the invasive intravenous introduction of gadolinium-based contrast agents that present potential high-risk toxicity, particularly for individuals with underlying chronic kidney diseases. Herein, we develop a completely non-invasive methodology that identifies the location and extent of an infarct region in the left ventricle via a machine learning (ML) model using only cardiac strains as inputs. In this transformative approach, we demonstrate the remarkable performance of a multi-fidelity ML model that combines rodent-based in-silico-generated training data (low-fidelity) with very limited patient-specific human data (high-fidelity) in predicting LGE ground truth. Our results offer a new paradigm for developing feasible prognostic tools by augmenting synthetic simulation-based data with very small amounts of in-vivo human data. More broadly, the proposed approach can significantly assist with addressing biomedical challenges in healthcare where human data are limited.

心肌梗死(MI)仍然是全球死亡的主要原因。梗死组织的精确定量对于诊断、治疗管理和心肌梗死后的护理至关重要。晚期钆增强-心脏磁共振成像(LGE-CMR)被认为是精确定位心肌梗死患者梗死组织的黄金标准。LGE-CMR 的一个基本局限是需要通过侵入性静脉注射钆基造影剂,而钆基造影剂具有潜在的高风险毒性,尤其是对患有慢性肾脏疾病的患者而言。在此,我们开发了一种完全无创的方法,通过机器学习(ML)模型,仅使用心脏应变作为输入,就能确定左心室梗死区域的位置和范围。在这一变革性方法中,我们展示了多保真度 ML 模型的卓越性能,该模型结合了基于啮齿动物硅胶内生成的训练数据(低保真度)和非常有限的患者特异性人类数据(高保真度),用于预测 LGE 地面真值。我们的研究结果为开发可行的预后工具提供了一种新的范例,即通过极少量的活体人体数据来增强基于合成模拟的数据。更广泛地说,所提出的方法可以极大地帮助解决人类数据有限的医疗保健领域的生物医学难题。
{"title":"Multi-Modality Deep Infarct: Non-invasive identification of infarcted myocardium using composite in-silico-human data learning.","authors":"Rana Raza Mehdi, Nikhil Kadivar, Tanmay Mukherjee, Emilio A Mendiola, Dipan J Shah, George Karniadakis, Reza Avazmohammadi","doi":"10.21203/rs.3.rs-4468678/v1","DOIUrl":"10.21203/rs.3.rs-4468678/v1","url":null,"abstract":"<p><p>Myocardial infarction (MI) continues to be a leading cause of death worldwide. The precise quantification of infarcted tissue is crucial to diagnosis, therapeutic management, and post-MI care. Late gadolinium enhancement-cardiac magnetic resonance (LGE-CMR) is regarded as the gold standard for precise infarct tissue localization in MI patients. A fundamental limitation of LGE-CMR is the invasive intravenous introduction of gadolinium-based contrast agents that present potential high-risk toxicity, particularly for individuals with underlying chronic kidney diseases. Herein, we develop a completely non-invasive methodology that identifies the location and extent of an infarct region in the left ventricle via a machine learning (ML) model using only cardiac strains as inputs. In this transformative approach, we demonstrate the remarkable performance of a multi-fidelity ML model that combines rodent-based in-silico-generated training data (low-fidelity) with very limited patient-specific human data (high-fidelity) in predicting LGE ground truth. Our results offer a new paradigm for developing feasible prognostic tools by augmenting synthetic simulation-based data with very small amounts of in-vivo human data. More broadly, the proposed approach can significantly assist with addressing biomedical challenges in healthcare where human data are limited.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177985/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332774","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Novel early-onset Alzheimer-associated genes influence risk through dysregulation of glutamate, immune activation, and intracell signaling pathways. 新型早老性痴呆相关基因通过谷氨酸、免疫激活和细胞内信号通路的失调影响发病风险。
Pub Date : 2024-06-05 DOI: 10.21203/rs.3.rs-4480585/v1
Carlos Cruchaga, Joseph Bradley, Daniel Western, Ciyang Wang, Eder Lucio Da Fonseca, Achal Neupane, Jiji Kurup, NIcholas Ray, Melissa Jean-Francois, Priyanka Gorijala, Kristy Bergmann, John Budde, Eden Martin, Margaret Pericak-Vance, Michael Cuccaro, Brian Kunkle, John Morris, David Holtzman, Richard Perrin, Adam Naj, Jonathan Haines, Gerard Schellenberg, Victoria Fernandez, Christiane Reitz, Gary Beecham

Alzheimer Disease (AD) is a highly polygenic disease that presents with relatively earlier onset (≤70yo; EOAD) in about 5% of cases. Around 90% of these EOAD cases remain unexplained by pathogenic mutations. Using data from EOAD cases and controls, we performed a genome-wide association study (GWAS) and trans-ancestry meta-analysis on non-Hispanic Whites (NHW, NCase=6,282, NControl=13,386), African Americans (AA NCase=782, NControl=3,663) and East Asians (NCase=375, NControl=838 CO). We identified eight novel significant loci: six in the ancestry-specific analyses and two in the trans-ancestry analysis. By integrating gene-based analysis, eQTL, pQTL and functional annotations, we nominate four novel genes that are involved in microglia activation, glutamate production, and signaling pathways. These results indicate that EOAD, although sharing many genes with LOAD, harbors unique genes and pathways that could be used to create better prediction models or target identification for this type of AD.

阿尔茨海默病(AD)是一种高度多基因疾病,约有 5%的病例发病较早(≤70yo;EOAD)。其中约 90% 的 EOAD 病例仍无法用致病基因突变来解释。利用 EOAD 病例和对照组的数据,我们对非西班牙裔白人(NHW,NCase=6,282,NControl=13,386)、非裔美国人(AA NCase=782,NControl=3,663)和东亚人(NCase=375,NControl=838 CO)进行了全基因组关联研究(GWAS)和跨祖先荟萃分析。我们发现了 8 个新的重要基因位点:6 个在特定祖先分析中,2 个在跨祖先分析中。通过整合基于基因的分析、eQTL、pQTL 和功能注释,我们提名了四个参与小胶质细胞激活、谷氨酸生成和信号通路的新基因。这些结果表明,尽管EOAD与LOAD共享许多基因,但其中存在独特的基因和通路,可用于创建更好的预测模型或鉴定这种类型AD的靶点。
{"title":"Novel early-onset Alzheimer-associated genes influence risk through dysregulation of glutamate, immune activation, and intracell signaling pathways.","authors":"Carlos Cruchaga, Joseph Bradley, Daniel Western, Ciyang Wang, Eder Lucio Da Fonseca, Achal Neupane, Jiji Kurup, NIcholas Ray, Melissa Jean-Francois, Priyanka Gorijala, Kristy Bergmann, John Budde, Eden Martin, Margaret Pericak-Vance, Michael Cuccaro, Brian Kunkle, John Morris, David Holtzman, Richard Perrin, Adam Naj, Jonathan Haines, Gerard Schellenberg, Victoria Fernandez, Christiane Reitz, Gary Beecham","doi":"10.21203/rs.3.rs-4480585/v1","DOIUrl":"10.21203/rs.3.rs-4480585/v1","url":null,"abstract":"<p><p>Alzheimer Disease (AD) is a highly polygenic disease that presents with relatively earlier onset (≤70yo; EOAD) in about 5% of cases. Around 90% of these EOAD cases remain unexplained by pathogenic mutations. Using data from EOAD cases and controls, we performed a genome-wide association study (GWAS) and trans-ancestry meta-analysis on non-Hispanic Whites (NHW, NCase=6,282, NControl=13,386), African Americans (AA NCase=782, NControl=3,663) and East Asians (NCase=375, NControl=838 CO). We identified eight novel significant loci: six in the ancestry-specific analyses and two in the trans-ancestry analysis. By integrating gene-based analysis, eQTL, pQTL and functional annotations, we nominate four novel genes that are involved in microglia activation, glutamate production, and signaling pathways. These results indicate that EOAD, although sharing many genes with LOAD, harbors unique genes and pathways that could be used to create better prediction models or target identification for this type of AD.</p>","PeriodicalId":94282,"journal":{"name":"Research square","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11177996/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141332776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Research square
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1