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Prognostic Value and Immune Characterization of Genes Associated with Childhood Acute Leukemia applying Single-Cell RNA Sequencing. 应用单细胞RNA测序检测儿童急性白血病相关基因的预后价值和免疫特性
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303420113250818064855
Zichao Lyu, Xiangyue Meng, Juan Xiao

Introduction: Childhood acute lymphoblastic leukemia (cALL), the most common pediatric hematologic malignancy, arises primarily from B-cell origin and is strongly associated with immune dysfunction. This article integrated single-cell and bulk transcriptomic data to identify key B-cell subsets and cALL-related molecules as biomarkers.

Methods: Single-cell RNA sequencing (scRNA-seq) Data from 2 pre-B high hyperdiploid (HHD) ALL patients and 3 healthy pediatric bone marrow samples (GSE132509) were utilized for cell clustering using the Seurat package. Functional enrichment, pseudo-time trajectory, and cell-cell communication analyses were performed using clusterProfiler, Monocle2, and CellChat R packages, respectively. Bulk RNA-seq data of 511 cALL samples in the TARGET-ALL-P2 cohort were used to construct a prognostic model via Cox and LASSO regression. Immune infiltration differences between different risk groups were analyzed using ESTIMATE, MCP-counter, and CIBERSORT algorithms.

Results: The scRNA-seq analysis identified five cell subpopulations, with B cells demonstrating significant enrichment in cALL samples. Notably, the C2 subset was associated with cell proliferation. Ligand-receptor analysis revealed key interactions involving B cell C2. Four marker genes (CENPF, IGLL1, ANP32E, and PSMA2) were identified to build a risk model. Low-risk patients showed better survival, while high-risk patients had higher ESTIMATE scores.

Discussion: This study examined the key role of B cells in cALL, constructed a risk model with strong prognostic predictive ability applying multi-omics analysis, and primarily explored its potential mechanism in immune regulation.

Conclusion: This study revealed the critical role of B cells in cALL, and the prognostic model showed a high prediction accuracy, providing a potential target for individualized treatment of cALL.

儿童急性淋巴细胞白血病(cALL)是最常见的儿童血液系统恶性肿瘤,主要由b细胞起源,并与免疫功能障碍密切相关。本文结合单细胞和大量转录组学数据来鉴定关键的b细胞亚群和call相关分子作为生物标志物。方法:采用Seurat包对2例前b型高高二倍体ALL患者和3例健康儿童骨髓样本(GSE132509)的单细胞RNA测序(scRNA-seq)数据进行细胞聚类。功能富集、伪时间轨迹和细胞-细胞通信分析分别使用clusterProfiler、Monocle2和CellChat R包进行。使用TARGET-ALL-P2队列中511例cALL样本的大量RNA-seq数据,通过Cox和LASSO回归构建预后模型。采用ESTIMATE、MCP-counter和CIBERSORT算法分析不同风险组间免疫浸润差异。结果:scRNA-seq分析鉴定出5个细胞亚群,其中B细胞在cALL样品中显著富集。值得注意的是,C2亚群与细胞增殖有关。配体-受体分析揭示了涉及B细胞C2的关键相互作用。鉴定4个标记基因(CENPF、IGLL1、ANP32E和PSMA2)建立风险模型。低危患者生存率较高,高危患者的ESTIMATE评分较高。讨论:本研究探讨了B细胞在cALL中的关键作用,应用多组学分析构建了具有较强预后预测能力的风险模型,并初步探讨了其在免疫调节中的潜在机制。结论:本研究揭示了B细胞在cALL中的关键作用,该预后模型具有较高的预测精度,为cALL的个体化治疗提供了潜在靶点。
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引用次数: 0
Protective Effects of Monoacylglycerol Lipase Inhibition in Rats with Severe Acute Pancreatitis and Its Possible Mechanism 单酰基甘油脂肪酶抑制对重症急性胰腺炎大鼠的保护作用及其可能机制。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303335207241225091132
Tong Su, Hongwei Xu, Ruixia Wang, Tong Xiao, Jing Wang, Shulei Zhao

Background and aim: In the context of gastrointestinal diseases, the role of monoacylglycerol lipase (MAGL) is significant. Therefore, the objective of this study was to examine the protective effects of

Methods: In this study, a rat model of SAP was established, and the rats were divided into three groups for treatment: the Control group (CON), the SAP group (SAP), and the SAP group treated with JZL184 (JZL184). The serum levels of amylase (AMS), alanine aminotransferase (ALT), creatinine (Cr), nitric oxide (NO), cyclic guanosine monophosphate (cGMP), and phosphodiesterase (PDE) were measured using enzyme-linked immunosorbent detection kits. The ascites volume was determined using the cotton ball weighing method. The levels of reactive oxygen species (ROS) were detected using the ROS Kit. Additionally, histological tissue changes were assessed through hematoxylin and eosin staining.

Results: The SAP group showed increased levels of AMS, ALT, Cr, ROS, and ascites volume compared to the CON group. Additionally, the SAP group exhibited congested and edematous lung and pancreatic tissues with inflammation. However, the JZL184 group, when compared to the SAP group, showed decreased levels of AMS, ALT, Cr, and ROS, reduced ascites volume, and significantly reduced lung tissue and pancreatic histopathology scores. In the NO/cGMP/PDE system, compared with the CON group, the levels of NO and PDE in the SAP group were higher and the levels of cGMP were lower. Compared with the SAP group, the JZL184 group decreased NO and PDE levels and increased cGMP levels.

Conclusions: Indeed, the inhibition of MAGL with JZL184 has been found to have a protective effect on rats with SAP. Specifically, it has shown significant improvement in the pathological damage of lung and pancreatic tissues. Furthermore, JZL184 has also exhibited protective effects on the liver and kidney. The mechanism may be related to the effect of JZL184 on the NO/cGMP/ PDE signaling pathway.

背景与目的:在胃肠道疾病中,单酰基甘油脂肪酶(MAGL)的作用是重要的。因此,本研究旨在探讨JZL184对重症急性胰腺炎(SAP)大鼠模型MAGL抑制的保护作用,并探讨其机制。方法:建立SAP大鼠模型,将大鼠分为对照组(CON)、SAP组(SAP)和SAP组(JZL184)治疗。采用酶联免疫吸附检测试剂盒检测血清淀粉酶(AMS)、丙氨酸转氨酶(ALT)、肌酐(Cr)、一氧化氮(NO)、环鸟苷单磷酸(cGMP)、磷酸二酯酶(PDE)水平。采用棉球称量法测定腹水体积。采用ROS Kit检测活性氧(ROS)水平。此外,通过苏木精和伊红染色评估组织学组织变化。结果:SAP组AMS、ALT、Cr、ROS水平及腹水容量均高于CON组。此外,SAP组表现出充血和水肿的肺和胰腺组织,并伴有炎症。然而,与SAP组相比,JZL184组表现出AMS、ALT、Cr和ROS水平降低,腹水体积减少,肺组织和胰腺组织病理学评分显著降低。在NO/cGMP/PDE系统中,与CON组相比,SAP组NO和PDE水平较高,cGMP水平较低。与SAP组比较,JZL184组小鼠NO、PDE水平降低,cGMP水平升高。结论:JZL184对MAGL的抑制确实对SAP大鼠具有保护作用,特别是对肺和胰腺组织的病理性损伤有明显改善。此外,JZL184还显示出对肝脏和肾脏的保护作用。其机制可能与JZL184对NO/cGMP/ PDE信号通路的影响有关。
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引用次数: 0
Sterile Inflammation and Cell Death Pathways in Liver Ischemia-Reperfusion Injury: A Review and Perspective. 肝缺血再灌注损伤中的无菌炎症和细胞死亡途径:综述与展望。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303401342250514102731
Weifan Huang, Wanting Meng, Jianan Zhao, Binbin Zhang

Background: Hepatic Ischemia-Reperfusion Injury (IRI) is a critical complication in liver transplantation and resection, driven by oxidative stress and sterile inflammation mediated by damage-associated molecular patterns (DAMPs). Current therapeutic challenges arise from interconnected cell death pathways and redundant inflammatory mechanisms.

Objective: This review synthesizes mechanistic insights into DAMP signaling and regulated cell death modalities in IRI, aiming to identify translational gaps and propose precision-targeted therapies.

Methods: A literature search in PubMed using keywords "IRI," "DAMPs," and cell death modes was conducted without date restrictions. Peer-reviewed studies on human/animal models were included, with qualitative synthesis of DAMP-cell death interactions.

Results: During ischemia, mitochondrial dysfunction releases HMGB1, ATP, and mtDNA, activating Kupffer cell TLR4/RAGE and cGAS-STING pathways, triggering NLRP3 inflammasome-- driven cytokine storms. Reperfusion amplifies ROS bursts, lipid peroxidation, and iron overload, creating a self-sustaining cycle of damage. Cell death modalities exhibit spatiotemporal specificity: hepatocyte ferroptosis dominates early injury, while macrophage pyroptosis and necroptosis predominate in steatotic livers during late phases. HMGB1 lactylation and mtDNA-cGAS signaling emerge as key regulators. Machine perfusion (e.g., hypothermic oxygenated perfusion) reduces biliary complications via mitochondrial resuscitation, outperforming conventional drugbased therapies.

Conclusion: Current single-pathway targeting shows limited efficacy due to IRI's complexity. Future strategies should integrate temporal targeting (ferroptosis inhibitors pre-reperfusion; pyroptosis blockers post-reperfusion), DAMP-neutralizing agents (anti-HMGB1 antibodies), and precision preservation combining multi-omics biomarkers with ex vivo pharmacological preconditioning. Addressing metabolic vulnerabilities in fatty livers and refining cell death-specific interventions are critical for bridging translational gaps.

背景:肝缺血再灌注损伤(IRI)是肝移植和肝切除术中的一个重要并发症,由损伤相关分子模式(DAMPs)介导的氧化应激和无菌炎症驱动。目前的治疗挑战来自相互关联的细胞死亡途径和冗余的炎症机制。目的:本综述综合了对IRI中DAMP信号传导和调节细胞死亡模式的机制见解,旨在确定翻译空白并提出精确靶向治疗。方法:使用关键词“IRI”、“DAMPs”和细胞死亡模式在PubMed中进行文献检索,无日期限制。包括同行评议的人类/动物模型研究,定性合成damp -细胞死亡相互作用。结果:缺血时,线粒体功能障碍释放HMGB1、ATP和mtDNA,激活Kupffer细胞TLR4/RAGE和cGAS-STING通路,触发NLRP3炎性小体驱动的细胞因子风暴。再灌注会放大ROS爆发、脂质过氧化和铁超载,形成一个自我维持的损伤循环。细胞死亡方式表现出时空特异性:肝细胞铁下垂在早期损伤中占主导地位,而巨噬细胞热下垂和坏死下垂在晚期脂肪变性肝中占主导地位。HMGB1乙酰化和mtDNA-cGAS信号是关键的调控因子。机器灌注(如低温氧灌注)通过线粒体复苏减少胆道并发症,优于传统的药物治疗。结论:由于IRI的复杂性,目前的单途径靶向治疗效果有限。未来的策略应该整合时间靶向(铁下垂抑制剂预再灌注;再灌注后焦亡阻滞剂),damp中和剂(抗hmgb1抗体),以及结合多组学生物标志物和体外药物预处理的精确保存。解决脂肪肝的代谢脆弱性和完善细胞死亡特异性干预对于弥合翻译空白至关重要。
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引用次数: 0
Potassium-Rich, Gluten-Free Diets for Patients with Sjögren's Syndrome: A Mini-Review Sjögren综合征患者的富钾无麸质饮食:一个假设。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303341983241223041524
Reza Rastmanesh, Ciro Gargiulo Isacco, Balachandar Vellingiri, Astghik Pepoyan, Francesco Marotta, Ishak Tekin, Roberto Catanzaro

Sjögren's syndrome (SS) is an autoimmune disease and its management is palliative.There is no specific dietary protocol for SS patients. A gluten-free diet has been tested in SS patients with celiac disease (CD) and indicated modest improvements. Whether gluten-free diets persè could alleviate autoimmune inflammatory processes in the salivary glands of SS patients withassociated CD or even in SS patients without CD is an interesting hypothesis and warrants clinicalstudies. Hypokalemia in SS patients is among the most frequent sequelae of renal tubular acidosis.Supplementation with potassium (K)-rich diets can reduce inflammation and oxidative stress. Klevel in CD patients is highly abnormal at diagnosis and gluten-free diets help to normalize itsserum level in CD patients. Furthermore, treatment of severe cases of SS requires concomitant glucocorticoid therapy and K supplementation. Results of two separate clinical trials in (i) patientswith rheumatoid arthritis (RA) –a disease with similar pathology to SS- indicated that the enhanced serum cortisol followed K supplementation, and in (ii) celiac patients, serum K levelswere normalized after the administration of a gluten-free diet. We reviewed the literature extensively on this topic to propose a hypothesis to address this problem and suggest a novel potentialfor K-rich, gluten-free diets in SS patients. Based on causal associations, we propose that higher Kabsorption and cortisol secretion following gluten-free diets accompanied by K-rich diets in SS patients with low serum potassium levels, may confer a higher therapeutic potential. Clinical trialsare needed to test this hypothesis.

Sjögren综合征(SS)是一种自身免疫性疾病,其管理是姑息性的。对于SS患者没有特定的饮食方案。无麸质饮食已在伴有乳糜泻(CD)的SS患者中进行了测试,并显示出适度的改善。是否无麸质饮食sè可以减轻伴有乳糜泻的SS患者或无乳糜泻的SS患者的唾腺自身免疫炎症过程是一个有趣的假设,值得临床研究。低钾血症是肾小管酸中毒最常见的后遗症之一。补充富含钾(K)的饮食可以减少炎症和氧化应激。乳糜泻患者的K水平在诊断时高度异常,无谷蛋白饮食有助于使乳糜泻患者的血清K水平正常化。此外,治疗严重的SS病例需要同时进行糖皮质激素治疗和补充钾。在(i)类风湿性关节炎(RA)患者(一种与SS病理相似的疾病)中进行的两项独立临床试验的结果表明,补充K后血清皮质醇水平升高,而在(ii)乳糜泻患者中,血清K水平在给予无麸质饮食后恢复正常。我们广泛地回顾了关于这一主题的文献,提出了一个假设来解决这一问题,并提出了一种富含k的无麸质饮食在SS患者中的新潜力。基于因果关系,我们提出,在低血清钾水平的SS患者中,无麸质饮食和富钾饮食后,更高的钾吸收和皮质醇分泌可能具有更高的治疗潜力。需要临床试验来验证这一假设。
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引用次数: 0
Yipishen Xiezhuo Jiedu Decoction in Ameliorating Kidney Damage Through miR-223/NLRP3/ Caspase-1 Pathway 益脾泻肾解毒汤通过miR-223/NLRP3/ Caspase-1通路改善肾损伤
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303402744250704071034
Jianfei Weng, Dengyong Zheng, Huijun Chen, Zhangcheng Huang, Xiaojing Wu, Weijie Zheng, Zi Yu, Qinghui Xu

Introduction: Hyperuricemia Nephropathy (HN) is an emerging metabolic disorder that predisposes individuals to Chronic Kidney Disease (CKD), yet effective treatments remain limited. Inflammation plays a pivotal role in HN-induced kidney injury, with the NLRP3 inflammasome serving as a central mediator of this process. This study investigates the therapeutic effects of Yipishen Xiezhuo Jiedu Decoction (YPSXZJDD), a traditional Chinese medicine, on HNinduced kidney injury through the miR-223/NLRP3/Caspase-1 pathway.

Materials and methods: The key active components of YPSXZJDD were screened using UHPLC- Q Exactive Orbitrap-MS, and a Protein-Protein Interaction (PPI) network diagram was constructed to explore potential mechanisms of action. The identified components were then utilized to intervene in both cellular and animal models of hyperuricemic nephropathy, evaluating their therapeutic effects and underlying mechanisms.

Results: Catalpol and Tanshinone IIA were identified as the key active components of YPSXZJDD. These compounds significantly mitigated renal epithelial cell apoptosis and inflammation by upregulating miR-223, which in turn inhibited the NLRP3/Caspase-1 pathway. The upregulation of miR-223 led to a marked reduction in NLRP3 activity and inflammatory responses, thereby alleviating HN-induced kidney damage.

Discussion: The findings of this study underscore the critical role of miR-223 in regulating the NLRP3 inflammasome and highlight its potential as a therapeutic target for HN. The inhibition of the NLRP3/Caspase-1 pathway by miR-223 significantly reduces inflammation and renal injury, demonstrating the therapeutic efficacy of YPSXZJDD. These results offer a novel perspective on the application of traditional Chinese medicine in treating HN, highlighting the importance of miR-223 in regulating inflammation.

Conclusion: This study demonstrates that YPSXZJDD alleviates HN-induced kidney injury by upregulating miR-223 and inhibiting the NLRP3/Caspase-1 pathway. The therapeutic potential of YPSXZJDD is supported by its ability to mitigate inflammation and renal damage, offering a promising approach for HN treatment. Further research into the broader role of miR-223 in kidney disease and related conditions is warranted to expand the understanding of its therapeutic applications.

高尿酸血症肾病(HN)是一种新兴的代谢性疾病,使个体易患慢性肾脏疾病(CKD),但有效的治疗方法仍然有限。炎症在hn诱导的肾损伤中起着关键作用,NLRP3炎症小体是这一过程的中心介质。本研究通过miR-223/NLRP3/Caspase-1通路,探讨中药益脾泻肾解毒汤(YPSXZJDD)对hni性肾损伤的治疗作用。材料与方法:采用UHPLC- Q Exactive Orbitrap-MS对YPSXZJDD的关键活性成分进行筛选,构建蛋白-蛋白相互作用(PPI)网络图,探讨其可能的作用机制。然后利用鉴定的成分干预高尿酸血症肾病的细胞和动物模型,评估其治疗效果和潜在机制。结果:经鉴定,梓醇和丹参酮IIA是YPSXZJDD的关键活性成分。这些化合物通过上调miR-223显著减轻肾上皮细胞凋亡和炎症,从而抑制NLRP3/Caspase-1通路。miR-223的上调导致NLRP3活性和炎症反应的显著降低,从而减轻hn诱导的肾损伤。讨论:本研究的发现强调了miR-223在调节NLRP3炎症小体中的关键作用,并强调了其作为HN治疗靶点的潜力。miR-223抑制NLRP3/Caspase-1通路可显著减轻炎症和肾损伤,证明YPSXZJDD的治疗效果。这些结果为中医治疗HN提供了一个新的视角,突出了miR-223在调节炎症中的重要性。结论:本研究表明,YPSXZJDD通过上调miR-223,抑制NLRP3/Caspase-1通路,减轻hn诱导的肾损伤。YPSXZJDD的治疗潜力得到了其减轻炎症和肾脏损害的能力的支持,为HN治疗提供了一种有希望的方法。进一步研究miR-223在肾脏疾病和相关疾病中的更广泛作用是有必要的,以扩大对其治疗应用的理解。
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引用次数: 0
Prediction of the Prognosis and Treatment Responses Based on the Characteristics of Disulfidptosis-Related Genes in Patients with Cervical Squamous Cell Carcinoma and Endocervical Adenocarcinoma 基于宫颈鳞状细胞癌和宫颈内膜腺癌患者二硫中毒相关基因特征的预后和治疗反应预测
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303374396250129111340
Min Kang, Sha Jiang, Huihui Chen, Youhua Xu, Hui Mo

Background: Disulfidptosis is a new type of regulatory cell death (RCD), but the pathophysiological functions and mechanisms of DRGs in CESC remain to be examined.

Aims: This study explored the mutation status of disulfidptosis-related genes (DRGs) in cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC).

Objective: After analyzing the mutation profiles of DRGs in CESC, this study established a prognostic model for CESC and also explored the differences in immune infiltration (accumulation of immune system cells in tissues or organs), related enriched pathways, and drug sensitivity between high-risk and low-risk CESC groups.

Methods: The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) were accessed to source related data. The mutation profiles of DRGs in CESC were analyzed using Mutect2 software, and disulfidptosis scores were calculated by ssGSEA. WGCNA was performed to identify modular genes, which were further filtered and used to formulate a risk model by applying the survival and glmnet packages. Low- and high-risk groups of CESC patients were classified using the survminer package. GSEA was performed to conduct pathway analysis, and immune infiltration was assessed using the MCPcounter package, ESTIMATE, and TIMER algorithms. Finally, immunotherapy response and drug sensitivity were analyzed using the TIDE method and the pRRophetic package, respectively.

Results: Except for NDUFA11, ARL6IP5, EPM2AIP1, GBE1, RBM38, ULK4, and ZBTB47 were found to be the DRGs significantly mutated in CESC. The six genes were integrated to develop a RiskScore model with a relatively high Area Under the Curve (AUC) value. Significant differences between the two risk groups were determined, indicating that the model was highly reliable. Notably, the low-risk group was enriched in energy metabolism-correlated pathways, while the high-risk group was primarily enriched in immune-correlated pathways. The high-risk group showed higher immune cell activity, higher TIDE score, and more B cells than the low-risk group. Drug sensitivity study revealed that the high-risk group was more sensitive to chemotherapy drugs.

Conclusion: This study provides novel insights into CESC prognosis, immunotherapy, and drug development, contributing to the clinical treatment for CESC.

背景:二硫下垂是一种新型的调节性细胞死亡(RCD),但DRGs在CESC中的病理生理功能和机制仍有待研究。目的:探讨宫颈鳞状细胞癌和宫颈内膜腺癌(CESC)中二硫塌陷相关基因(DRGs)的突变情况。目的:通过分析CESC中DRGs的突变谱,建立CESC的预后模型,探讨CESC高危组与低危组在免疫浸润(免疫系统细胞在组织或器官的积聚)、相关富集途径、药物敏感性等方面的差异。方法:利用肿瘤基因组图谱(TCGA)和基因表达图谱(GEO)获取相关数据。使用Mutect2软件分析CESC中DRGs的突变谱,并使用ssGSEA计算双侧下垂评分。采用WGCNA方法鉴定模块化基因,对其进行进一步筛选,并应用生存包和glmnet包建立风险模型。使用survminer包对CESC患者进行低危组和高危组的分类。GSEA进行通路分析,使用MCPcounter包、ESTIMATE和TIMER算法评估免疫浸润。最后分别用TIDE法和prophytic包分析免疫治疗反应和药物敏感性。结果:除NDUFA11外,在CESC中还发现了ARL6IP5、EPM2AIP1、GBE1、RBM38、ULK4、ZBTB47等显著突变的DRGs。将这6个基因整合到一个具有较高曲线下面积(AUC)值的RiskScore模型中。两个风险组之间存在显著差异,表明该模型具有较高的可靠性。值得注意的是,低危组富集了能量代谢相关通路,而高危组主要富集了免疫相关通路。高危组免疫细胞活性、TIDE评分、B细胞数量均高于低危组。药物敏感性研究显示,高危人群对化疗药物更为敏感。结论:本研究为CESC的预后、免疫治疗和药物开发提供了新的见解,有助于CESC的临床治疗。
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引用次数: 0
Identification of Senescence- and Inflammation-Related Genes and Immune Microenvironment Characterization in Intracranial Aneurysms 颅内动脉瘤中衰老和炎症相关基因的鉴定及免疫微环境特征。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303420035251023051847
Xiaoyan Li, Yingying Li, Le Zhang, Jie Mao, Bin Li

Introduction: Intracranial aneurysm (IA) is a cerebrovascular disease that lacks effective methods for early diagnosis and risk prediction. Considering the pivotal roles of senescence and inflammation in many diseases, this study aimed to identify related biomarkers for IA and explore their underlying mechanisms.

Methods: The GSE122897 and GSE75436 datasets were obtained from the Gene Expression Omnibus (GEO) database. Senescence and inflammation scores were calculated using single-sample GSEA (ssGSEA), and weighted gene co-expression network analysis (WGCNA) was performed to identify relevant modules and hub genes. Differentially expressed genes (DEGs) were determined with the DESeq2 package, followed by conducting LASSO regression and support vector machine-recursive feature elimination (SVM-RFE) to screen key genes. Immune infiltration was analyzed using CIBERSORT and ESTIMATE algoritms, and correlations between key genes and immune cells were assessed. Finally, transcription factor (TF)-miRNA regulatory networks were constructed using the JASPAR package and ENCORI database.

Results: IA samples exhibited significantly higher senescence and inflammation scores in comparison to the controls. A total of 858 hub genes identified by WGCNA were intersected with the DEGs for further refinement by LASSO and SVM-RFE, ultimately yielding PTCH1, ACACB, DRD1, and SLC25A21-AS1 as the candidate genes for IA. Immune infiltration analysis showed that the expression of these genes was associated with several immune cells, including NK cells. Moreover, IA samples had higher ESTIMATEScore, ImmuneScore, and StromalScore, which were all negatively correlated with the expression of the four genes. TF-miRNA network analysis revealed 67, 71, and 76 potential TF regulators for PTCH1, ACACB, and SLC25A21-AS1, respectively.

Discussion: These findings indicated that senescence and inflammation contributed to IA pathogenesis and may regulate disease progression by modulating the immune microenvironment, highlighting their dual role in IA.

Conclusion: PTCH1, ACACB, and SLC25A21-AS1 were identified as potential biomarkers associated with senescence and inflammation in IA, providing novel insights into its molecular mechanisms and potential diagnostic or therapeutic targets.

颅内动脉瘤(Intracranial动脉瘤,IA)是一种早期诊断和风险预测缺乏有效方法的脑血管疾病。考虑到衰老和炎症在许多疾病中的关键作用,本研究旨在鉴定IA的相关生物标志物并探讨其潜在机制。方法:从Gene Expression Omnibus (GEO)数据库中获取GSE122897和GSE75436数据集。使用单样本GSEA (ssGSEA)计算衰老和炎症评分,并使用加权基因共表达网络分析(WGCNA)识别相关模块和枢纽基因。采用DESeq2软件包确定差异表达基因(DEGs),然后进行LASSO回归和支持向量机递归特征消除(SVM-RFE)筛选关键基因。采用CIBERSORT和ESTIMATE算法分析免疫浸润,评估关键基因与免疫细胞的相关性。最后,利用JASPAR软件包和ENCORI数据库构建转录因子(TF)-miRNA调控网络。结果:与对照组相比,IA样品显示出明显更高的衰老和炎症评分。将WGCNA鉴定出的858个hub基因与deg相交,通过LASSO和SVM-RFE进一步细化,最终得到PTCH1、ACACB、DRD1和SLC25A21-AS1作为IA的候选基因。免疫浸润分析表明,这些基因的表达与几种免疫细胞有关,包括NK细胞。此外,IA样品具有较高的ESTIMATEScore、ImmuneScore和StromalScore,这四个基因的表达均呈负相关。TF- mirna网络分析显示,PTCH1、ACACB和SLC25A21-AS1的潜在TF调节因子分别为67、71和76个。讨论:这些发现表明,衰老和炎症参与IA的发病机制,并可能通过调节免疫微环境来调节疾病进展,突出了它们在IA中的双重作用。结论:PTCH1、ACACB和SLC25A21-AS1被确定为IA中与衰老和炎症相关的潜在生物标志物,为其分子机制和潜在的诊断或治疗靶点提供了新的见解。
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引用次数: 0
Magnesium Level and Related Factors in Type 2 Diabetes Mellitus: A Cross-Sectional Study 2型糖尿病患者镁水平及相关因素:一项横断面研究
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303411661250721141050
Kamil Konur, Hatice Beyazal Polat, Erol Karavar, Teslime Ayaz

Introduction: Type 2 diabetes mellitus is a chronic metabolic disorder often accompanied by alterations in serum magnesium levels. This study aimed to investigate the relationship between serum magnesium concentration and glycemic control, comorbidities, and medication use in patients with type 2 diabetes mellitus.

Methods: A retrospective cross-sectional analysis was conducted using data from 502 patients. Glycemic control was assessed based on HbA1c levels, and serum magnesium concentrations were evaluated concerning clinical and demographic variables. Statistical analyses included ttests, Mann-Whitney U tests, logistic regression, and ROC curve analysis.

Results: Patients with poor glycemic control had significantly lower serum magnesium levels. Magnesium levels were lower in females, particularly postmenopausal women. Magnesium levels were significantly associated with hypertension, gender, and the use of specific medications such as metformin and indapamide. Logistic regression revealed a significant inverse association between serum Magnesium levels and congestive heart failure (OR = 0.055), but not with other comorbidities. ROC analysis revealed limited predictive value of magnesium for glycemic control (AUC = 0.41).

Discussion: Although group-level differences in magnesium were evident, magnesium levels alone were not reliable predictors of glycemic control. However, the associations with CHF, HT, gender, and specific medications suggest that magnesium plays a multifaceted role in type 2 diabetes mellitus management.

Conclusion: Regular monitoring of serum magnesium may aid in identifying at-risk patients, especially those with hypertension, CHF, or on magnesium-depleting medications. Further prospective studies are needed to clarify the clinical utility of magnesium in diabetes care.

2型糖尿病是一种慢性代谢紊乱,常伴有血清镁水平的改变。本研究旨在探讨2型糖尿病患者血清镁浓度与血糖控制、合并症和用药的关系。方法:对502例患者资料进行回顾性横断面分析。根据HbA1c水平评估血糖控制,并根据临床和人口统计学变量评估血清镁浓度。统计分析包括检验、Mann-Whitney U检验、逻辑回归和ROC曲线分析。结果:血糖控制较差的患者血清镁水平明显降低。女性的镁含量较低,尤其是绝经后的女性。镁水平与高血压、性别和特定药物(如二甲双胍和吲达帕胺)的使用显著相关。Logistic回归显示血清镁水平与充血性心力衰竭呈显著负相关(OR = 0.055),但与其他合并症无显著负相关。ROC分析显示,镁对血糖控制的预测价值有限(AUC = 0.41)。讨论:虽然镁的组间差异很明显,但单独的镁水平并不是血糖控制的可靠预测指标。然而,与CHF、HT、性别和特定药物的关联表明,镁在2型糖尿病的治疗中起着多方面的作用。结论:定期监测血清镁可能有助于识别高危患者,特别是高血压、心力衰竭或服用缺镁药物的患者。需要进一步的前瞻性研究来阐明镁在糖尿病治疗中的临床应用。
{"title":"Magnesium Level and Related Factors in Type 2 Diabetes Mellitus: A Cross-Sectional Study","authors":"Kamil Konur, Hatice Beyazal Polat, Erol Karavar, Teslime Ayaz","doi":"10.2174/0118715303411661250721141050","DOIUrl":"10.2174/0118715303411661250721141050","url":null,"abstract":"<p><strong>Introduction: </strong>Type 2 diabetes mellitus is a chronic metabolic disorder often accompanied by alterations in serum magnesium levels. This study aimed to investigate the relationship between serum magnesium concentration and glycemic control, comorbidities, and medication use in patients with type 2 diabetes mellitus.</p><p><strong>Methods: </strong>A retrospective cross-sectional analysis was conducted using data from 502 patients. Glycemic control was assessed based on HbA1c levels, and serum magnesium concentrations were evaluated concerning clinical and demographic variables. Statistical analyses included ttests, Mann-Whitney U tests, logistic regression, and ROC curve analysis.</p><p><strong>Results: </strong>Patients with poor glycemic control had significantly lower serum magnesium levels. Magnesium levels were lower in females, particularly postmenopausal women. Magnesium levels were significantly associated with hypertension, gender, and the use of specific medications such as metformin and indapamide. Logistic regression revealed a significant inverse association between serum Magnesium levels and congestive heart failure (OR = 0.055), but not with other comorbidities. ROC analysis revealed limited predictive value of magnesium for glycemic control (AUC = 0.41).</p><p><strong>Discussion: </strong>Although group-level differences in magnesium were evident, magnesium levels alone were not reliable predictors of glycemic control. However, the associations with CHF, HT, gender, and specific medications suggest that magnesium plays a multifaceted role in type 2 diabetes mellitus management.</p><p><strong>Conclusion: </strong>Regular monitoring of serum magnesium may aid in identifying at-risk patients, especially those with hypertension, CHF, or on magnesium-depleting medications. Further prospective studies are needed to clarify the clinical utility of magnesium in diabetes care.</p>","PeriodicalId":94316,"journal":{"name":"Endocrine, metabolic & immune disorders drug targets","volume":" ","pages":"e18715303411661"},"PeriodicalIF":2.0,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144786344","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Relationship between Aging and Ketogenic Diet: A Bibliometric Analysis (1995-2025) 衰老与生酮饮食的关系:文献计量学分析(1995-2025)。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303376457250617154223
Tugba Elgun, Ayşe Akgul Isik, Enver Ciraci, Gul Ipek Gundogan, Kaan Ziksahna, Halil Ibrahim Arslan

Background: The potential benefits of the ketogenic diet (KD) on ageing are currentlyreceiving increasing attention. Although there are various studies on this subject in the existing literature, there is a lack of systematic review and bibliometric analysis.

Aims: This study aimed to present a bibliometric overview and visualization analysis of the existing studies examining the relationship between KD and ageing, identify trends in this field, andprovide a basis for future research and sustainable development goals.

Materials and methods: This study involved a systematic review of the literature. In this study,Scopus (Elsevier) and Web of Science Core Collection (WoSCC) databases were used for bibliometric analysis. In the study, all articles, reviews, and other types of publications on KD and ageing published between 1995 and 2024 were analysed. Studies covering the years 1995-2025 and including the keywords ‘ketogenic diet OR ketogenic diets OR ketone diet AND aging AND PUBYEAR > 1995 AND PUBYEAR < 2025' in the title were included. The VOSviewer software(VOSviewer v.1.6.10) was utilized to visualize the data. The data obtained were evaluated by bibliometric methods, such as keyword analysis and cluster analysis.

Results: A significant increase in the number of studies on KD and ageing was observed. In thestudy, when the data obtained from WoSCC and Scopus databases and VOSviewer analysis results were evaluated together, a total of 10,170 scientific documents in the Scopus database and atotal of 168 scientific documents were identified in the Web of Science database between1995-2025 worldwide. The author publishing the most on the subject was found to be Cunnane,S.C. The country contributing the most to the field was found to be the United States of America(USA). The institution that produced the most documents was Harvard Medical School. In a totalof 10,170 records, the most preferred type of publication was articles. Nutrients journal was thejournal with the highest number of publications. According to the results of keyword analysis, thewords “ketogenic diet” and “aging” were the most frequently used and most strongly relatedwords.

Conclusion: The results of this study showed a significant increase in the number of studies investigating the effects of KD on ageing. More high-quality, randomised controlled clinical trialsare needed in this field. In particular, there is a lack of studies examining the effects of KD onage-related diseases at the molecular level.

背景:生酮饮食(KD)对衰老的潜在益处目前受到越来越多的关注。虽然已有文献对这一课题的研究较多,但缺乏系统综述和文献计量分析。目的:本研究旨在对KD与老龄化关系的现有研究进行文献计量学综述和可视化分析,确定该领域的发展趋势,为未来的研究和可持续发展目标提供基础。材料和方法:本研究系统回顾了相关文献。本研究使用Scopus (Elsevier)和Web of Science Core Collection (WoSCC)数据库进行文献计量学分析。在这项研究中,分析了1995年至2024年间发表的所有关于KD和老龄化的文章、评论和其他类型的出版物。纳入涵盖1995-2025年的研究,标题中包含关键词“生酮饮食或生酮饮食与衰老”以及PUBYEAR bbbb1995和PUBYEAR < 2025”。利用VOSviewer软件(VOSviewer v.1.6.10)对数据进行可视化。通过关键词分析、聚类分析等文献计量学方法对所得数据进行评价。结果:KD与衰老的研究数量显著增加。本研究将WoSCC和Scopus数据库的数据以及VOSviewer的分析结果进行综合评价,在1995-2025年期间,Scopus数据库共收录了10170篇科学文献,Web of Science数据库共收录了168篇科学文献。在这一领域发表最多文章的作者是南卡罗来纳州的Cunnane,在这一领域贡献最多的国家是美利坚合众国。产生最多文件的机构是哈佛医学院。在总共10,170条记录中,最受欢迎的出版类型是文章。《营养》杂志是发表数量最多的杂志。关键词分析结果显示,“生酮饮食”和“衰老”是使用频率最高、相关性最强的词。结论:本研究结果表明,研究KD对衰老影响的研究数量显著增加。这一领域需要更多高质量的随机对照临床试验。特别是缺乏从分子水平研究KD对年龄相关疾病影响的研究。
{"title":"Relationship between Aging and Ketogenic Diet: A Bibliometric Analysis (1995-2025)","authors":"Tugba Elgun, Ayşe Akgul Isik, Enver Ciraci, Gul Ipek Gundogan, Kaan Ziksahna, Halil Ibrahim Arslan","doi":"10.2174/0118715303376457250617154223","DOIUrl":"10.2174/0118715303376457250617154223","url":null,"abstract":"<p><strong>Background: </strong>The potential benefits of the ketogenic diet (KD) on ageing are currently\u0000receiving increasing attention. Although there are various studies on this subject in the existing literature, there is a lack of systematic review and bibliometric analysis.</p><p><strong>Aims: </strong>This study aimed to present a bibliometric overview and visualization analysis of the existing studies examining the relationship between KD and ageing, identify trends in this field, and\u0000provide a basis for future research and sustainable development goals.</p><p><strong>Materials and methods: </strong>This study involved a systematic review of the literature. In this study,\u0000Scopus (Elsevier) and Web of Science Core Collection (WoSCC) databases were used for bibliometric analysis. In the study, all articles, reviews, and other types of publications on KD and ageing published between 1995 and 2024 were analysed. Studies covering the years 1995-2025 and including the keywords ‘ketogenic diet OR ketogenic diets OR ketone diet AND aging AND PUBYEAR > 1995 AND PUBYEAR < 2025' in the title were included. The VOSviewer software\u0000(VOSviewer v.1.6.10) was utilized to visualize the data. The data obtained were evaluated by bibliometric methods, such as keyword analysis and cluster analysis.</p><p><strong>Results: </strong>A significant increase in the number of studies on KD and ageing was observed. In the\u0000study, when the data obtained from WoSCC and Scopus databases and VOSviewer analysis results were evaluated together, a total of 10,170 scientific documents in the Scopus database and a\u0000total of 168 scientific documents were identified in the Web of Science database between\u00001995-2025 worldwide. The author publishing the most on the subject was found to be Cunnane,\u0000S.C. The country contributing the most to the field was found to be the United States of America\u0000(USA). The institution that produced the most documents was Harvard Medical School. In a total\u0000of 10,170 records, the most preferred type of publication was articles. Nutrients journal was the\u0000journal with the highest number of publications. According to the results of keyword analysis, the\u0000words “ketogenic diet” and “aging” were the most frequently used and most strongly related\u0000words.</p><p><strong>Conclusion: </strong>The results of this study showed a significant increase in the number of studies investigating the effects of KD on ageing. More high-quality, randomised controlled clinical trials\u0000are needed in this field. In particular, there is a lack of studies examining the effects of KD on\u0000age-related diseases at the molecular level.</p>","PeriodicalId":94316,"journal":{"name":"Endocrine, metabolic & immune disorders drug targets","volume":" ","pages":"e18715303376457"},"PeriodicalIF":2.0,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144546755","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Development of a Novel 11-Gene Signature Related to Immune Subtypes for Fibromyalgia 与纤维肌痛免疫亚型相关的一个新的11个基因标记的发展。
IF 2 Pub Date : 2026-01-01 DOI: 10.2174/0118715303365068250303042017
Wei Zhao, Pengcheng Wang

Aim: The purpose of this study was to identify molecular subtypes and hub genes in fibromyalgia [FM] based on immune-related genes [IRGs].

Background: FM is a chronic disease featuring widespread pain, and the immune system may be involved in the FM progression.

Objective: The objectives of this study are as follows: 1] To identify the molecular subtypes of FM based on IRGs. 2] To screen and validate the hub genes in FM. 3] To predict the transcription factor [TF] targeting hub genes and 4] To evaluate the correlation between immune cell infiltration, hallmark pathways, and hub genes.

Methods: Two FM datasets were acquired from the Gene Expression Omnibus [GEO] database. IRGs were collected from the ImmPort database. Molecular subtypes of FM were identified using the "ConsensusClusterPlus" package. IRGs score and differentially expressed genes [DEGs] between different FM subtypes and control samples were obtained using "GSVA" and "limma" packages. Key module genes related to FM subtypes were identified using the "WGCNA" package. Hub genes were screened and verified using "glmnet" and "pROC" packages. TF-hub gene regulatory network was constructed by Cytoscape software. The correlation between immune cells, hallmark pathways, and hub genes was analyzed by the Spearman method. Finally, the DSigDB database was used to obtain associations between characterized genes and drugs, and the expression of key genes was verified using qRT-PCR.

Results: FM samples were classified into two subtypes, and the IRGs score of the C2 subtype was lower than that of the C1 subtype. Then, 184 module genes were obtained and mainly enriched in immune-related pathways. Next, 11 hub genes [TSPAN16, RILPL2, RASSF5, PGAP2, PADI2, NACC1, LRRC25, ITGAD, HIPK1, ATP6V0D1, AP1M2] were screened with good diagnostic performance. Besides, 45 TFs targeting hub genes were predicted. Most hub genes were negatively associated with CD4/CD8 T cells while positively correlated with macrophages, mast cell, monocyte, and neutrophil, as well as inflammatory response, angiogenesis pathways, etc. Molecular docking suggests that chloroquine and L-citrulline may be potent agents for the treatment of NACC1 and PADI2. RILPL2 and ITGAD were significantly differentially expressed in control and FM group mouse models.

Conclusion: This study identified two subtypes and 11 hub genes of FM based on IRGs, providing a reference for the clinical diagnosis of FM.

目的:本研究的目的是基于免疫相关基因[IRGs]鉴定纤维肌痛[FM]的分子亚型和枢纽基因。背景:FM是一种以广泛性疼痛为特征的慢性疾病,免疫系统可能参与FM的进展。目的:本研究的目的如下:1]基于IRGs鉴定FM的分子亚型。[2]筛选和验证FM的枢纽基因。[3]预测靶向中枢基因的转录因子[TF];[4]评估免疫细胞浸润、标志通路和中枢基因之间的相关性。方法:从Gene Expression Omnibus [GEO]数据库中获取两个FM数据集。irg是从import数据库中收集的。使用“ConsensusClusterPlus”软件包确定FM的分子亚型。使用“GSVA”和“limma”包装获得不同FM亚型和对照样本之间的IRGs评分和差异表达基因[DEGs]。使用“WGCNA”包鉴定FM亚型相关的关键模块基因。使用“glmnet”和“pROC”包筛选Hub基因并进行验证。利用Cytoscape软件构建TF-hub基因调控网络。用Spearman方法分析免疫细胞、标志通路和枢纽基因之间的相关性。最后利用DSigDB数据库获取表征基因与药物的关联,并利用qRT-PCR验证关键基因的表达。结果:FM样本分为两种亚型,C2亚型的IRGs评分低于C1亚型。共获得184个模块基因,主要富集于免疫相关通路。接下来,筛选出11个枢纽基因[TSPAN16、RILPL2、RASSF5、PGAP2、PADI2、NACC1、LRRC25、ITGAD、HIPK1、ATP6V0D1、AP1M2],诊断效果较好。此外,还预测了45个靶向枢纽基因的TFs。hub基因多数与CD4/CD8 T细胞呈负相关,而与巨噬细胞、肥大细胞、单核细胞、中性粒细胞以及炎症反应、血管生成途径等呈正相关。分子对接提示氯喹和l -瓜氨酸可能是治疗NACC1和PADI2的有效药物。RILPL2和ITGAD在对照组和FM组小鼠模型中有显著差异表达。结论:本研究基于IRGs鉴定出FM的2个亚型和11个枢纽基因,为FM的临床诊断提供参考。
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引用次数: 0
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Endocrine, metabolic & immune disorders drug targets
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