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In vivo analysis techniques for antibody drug: Recent advances and methodological insights. 抗体药物体内分析技术:最新进展和方法学见解。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-23 DOI: 10.1016/j.jpha.2025.101314
Xiaolu Miao, Beilei Sun, Jian Zhang, Jinge Zhao, Bing Ma, Yongming Li, Weizhi Wang

Antibody drugs, such as monoclonal antibodies and antibody-drug conjugates, have shown significant potential in treating diseases due to their high specificity and affinity. In vivo analysis of antibody drugs with non-invasive and real-time techniques is of importance to understand dynamic behavior of drugs within living organisms, and help evaluate their pharmacokinetics and efficacies. This review summarizes the advances and in vivo analysis methods of antibody drugs, including the techniques of radiolabeled imaging, near-infrared fluorescence imaging and surface-enhanced Raman spectroscopy. The principles, applications, and challenges of each technique are discussed, which provides insights for the development of antibody drugs and in vivo analytical methods.

抗体药物,如单克隆抗体和抗体-药物偶联物,由于其高特异性和亲和力,在治疗疾病方面显示出巨大的潜力。利用非侵入性和实时技术对抗体药物进行体内分析,对于了解药物在生物体内的动态行为,以及评估其药代动力学和疗效具有重要意义。本文综述了抗体药物的体内分析方法及其进展,包括放射标记成像技术、近红外荧光成像技术和表面增强拉曼光谱技术。讨论了每种技术的原理、应用和挑战,为抗体药物和体内分析方法的发展提供了见解。
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引用次数: 0
Advancements in plant-derived exosome-like vesicles: Versatile bioactive carriers for targeted drug delivery systems. 植物源性外泌体样囊泡的进展:靶向药物递送系统的多功能生物活性载体。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-14 DOI: 10.1016/j.jpha.2025.101300
Haixia Shen, Shuaiguang Li, Liyuan Lin, Qian Wu, Zhonghua Dong, Wei Xu

Exosomes, small vesicles secreted by a wide range of cells, are found extensively in animals, plants, and microorganisms. Their excellent biocompatibility, efficient delivery capacity, and ease of membrane crossing have drawn significant interest as promising drug delivery carriers. Compared with their animal-derived counterparts, plant-derived exosomes (PDEs), in particular, stand out for their lower toxicity to human tissues, diverse sources, and enhanced targeted delivery capabilities. Advances in both in-depth research and technological development have enabled scholars to isolate exosomes successfully from various plants, exploring their potential in clinical therapies. However, the precise identification of PDEs and their drug delivery mechanisms remains an area of ongoing investigation. This review synthesizes the latest developments in the biogenesis, extraction, separation, and identification of PDEs, along with their engineering modifications and drug-loading strategies. We also delve into the therapeutic applications of exosomes and their future potential in drug delivery, aiming to elucidate the targeted delivery mechanisms of PDEs and pave new paths for clinical drug treatment.

外泌体是由多种细胞分泌的小囊泡,广泛存在于动物、植物和微生物中。它们优异的生物相容性、高效的传递能力和易于跨膜的特性,已成为有前途的药物传递载体。与动物源性外泌体相比,植物源性外泌体(pde)尤其因其对人体组织的毒性较低、来源多样以及增强的靶向递送能力而脱颖而出。随着研究的深入和技术的发展,学者们成功地从各种植物中分离出外泌体,探索其在临床治疗中的潜力。然而,PDEs的精确鉴定及其给药机制仍然是一个正在进行的研究领域。本文综述了PDEs的生物发生、提取、分离、鉴定、工程修饰和载药策略等方面的最新进展。我们还深入研究了外泌体的治疗应用及其在药物递送方面的未来潜力,旨在阐明PDEs的靶向递送机制,为临床药物治疗铺平新的道路。
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引用次数: 0
Geometry-based BERT: An experimentally validated deep learning model for molecular property prediction in drug discovery. 基于几何的BERT:一个经过实验验证的深度学习模型,用于药物发现中的分子特性预测。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-10-09 DOI: 10.1016/j.jpha.2025.101465
Xiang Zhang, Chenliang Qian, Bochao Yang, Hongwei Jin, Song Wu, Jie Xia, Fan Yang, Liangren Zhang

Various deep learning based methods have significantly impacted the realm of drug discovery. The development of deep learning methods for identifying novel structural types of active compounds has become an urgent challenge. In this paper, we introduce a self-supervised representation learning framework, i.e., Geometry-based Bidirectional Encoder Representations from Transformers (GEO-BERT). GEO-BERT considers the information of atoms and chemical bonds in chemical structures as the input, and integrates the positional information of the three-dimensional conformation of the molecule for training. Specifically, GEO-BERT enhances its ability to characterize molecular structures by introducing three different positional relationships: atom-atom, bond-bond, and atom-bond. By benchmarking study, GEO-BERT has demonstrated optimal performance on multiple benchmarks. We also performed prospective study to validate the GEO-BERT model, with screening for DYRK1A inhibitors as a case. Two potent and novel DYRK1A inhibitors (IC50: <1 μM) were ultimately discovered. Taken together, we have developed an open-source GEO-BERT model for molecular property prediction (https://github.com/drug-designer/GEO-BERT) and proved its practical utility in early-stage drug discovery.

各种基于深度学习的方法对药物发现领域产生了重大影响。利用深度学习方法识别新结构类型的活性化合物已成为一项紧迫的挑战。在本文中,我们引入了一个自监督表示学习框架,即基于几何的双向编码器表示(GEO-BERT)。GEO-BERT将化学结构中的原子和化学键信息作为输入,整合分子三维构象的位置信息进行训练。具体来说,GEO-BERT通过引入原子-原子、键-键和原子-键三种不同的位置关系来增强其表征分子结构的能力。通过基准测试研究,GEO-BERT在多个基准测试中展示了最佳性能。我们还进行了前瞻性研究来验证GEO-BERT模型,以筛选DYRK1A抑制剂为例。两种有效的新型DYRK1A抑制剂(IC50:
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引用次数: 0
Sample preparation techniques for quality evaluation and safety control of medicinal and edible plants: Overview, advances, applications, and future perspectives. 药用和食用植物质量评价和安全控制的样品制备技术:综述、进展、应用和未来展望。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-10 DOI: 10.1016/j.jpha.2025.101296
Lingxuan Ma, Lele Yang, Lijun Tang, Yudi Wang, Hua Luo, Zhangfeng Zhong, Wensheng Zhang, Di Chen, Jinchao Wei, Peng Li, Yitao Wang

Medicinal and edible plants (MEPs) have attracted increasing interest worldwide due to their natural origin, reliable efficacy, and minimal side effects in recent years. However, the complex and fluctuating levels of inherent chemical constituents and exogenous hazardous contaminants have triggered widespread concerns about their efficacy and safety. Developing analytical methods for both active components and exogenous contaminants concealed in these samples is central to the quality evaluation, in which sample preparation is crucial. This paper systematically reviewed the evolution of standard sample preparation methods, microextraction techniques based on novel solvents and nanomaterials, and innovative integrated techniques from 2019. Accordingly, their merits and weaknesses were discussed by showing fruitful applications in identifying and quantifying active components in these plants. Further, successful applications for analyzing exogenous contaminants were prominently showcased, highlighting the management of pesticides, heavy metals, mycotoxins, and polycyclic aromatic hydrocarbons (PAHs). Finally, forthcoming trends in sample preparation techniques were delineated to illuminate the development and implementation of more advanced sample preparation technologies.

近年来,药用和食用植物(MEPs)因其天然来源,可靠的功效和最小的副作用而引起了全世界越来越多的兴趣。然而,固有化学成分和外源性有害污染物的复杂和波动水平引发了对其有效性和安全性的广泛关注。在这些样品中隐藏的活性成分和外源污染物的分析方法是质量评估的核心,其中样品制备是至关重要的。本文系统综述了2019年以来标准样品制备方法、基于新型溶剂和纳米材料的微萃取技术以及创新集成技术的发展。通过对这些植物有效成分的鉴定和定量分析,讨论了它们的优缺点。此外,还重点展示了外源污染物分析的成功应用,重点介绍了农药、重金属、真菌毒素和多环芳烃(PAHs)的管理。最后,描述了样品制备技术的未来趋势,以阐明更先进的样品制备技术的发展和实施。
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引用次数: 0
Recent insights into the roles and therapeutic potentials of GLS1 in inflammatory diseases. GLS1在炎性疾病中的作用和治疗潜力的最新见解。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-02 DOI: 10.1016/j.jpha.2025.101292
Jian-Xiang Sheng, Yan-Jun Liu, Jing Yu, Ran Wang, Ru-Yi Chen, Jin-Jin Shi, Guan-Jun Yang, Jiong Chen

Glutaminase 1 (GLS1) is a crucial enzyme that serves as the initial rate-limiting factor in glutaminolysis, a metabolic process that releases various factors that influence biological processes such as development, differentiation, and immune responses. Several studies have systematically investigated the crucial role of GLS1 in cancer. However, there is a lack of a comprehensive understanding of the relationship between GLS1 and inflammation. In this review, we present a detailed examination of GLS1, and discuss its structure, function, and role in inflammatory pathways. Here, we summarize the evidence supporting GLS1's involvement in several inflammatory diseases and explore the potential therapeutic applications of GLS1 inhibitors. We found that GLS1 plays a crucial regulatory role in inflammation by mediating glutaminolysis. Targeting GLS1, such as through the use of GLS1 inhibitors, can effectively alleviate inflammation induced by GLS1. Furthermore, we highlight the challenges and opportunities associated with investigating GLS1 function and developing targeted inhibitors, and propose practical solutions that offer valuable insights for the functional exploration and discovery of potential therapeutics aimed at treating inflammatory diseases.

谷氨酰胺酶1 (GLS1)是谷氨酰胺酶解的关键酶,是谷氨酰胺酶解的初始限速因子,谷氨酰胺酶解是一种代谢过程,释放各种影响发育、分化和免疫反应等生物过程的因子。一些研究系统地研究了GLS1在癌症中的关键作用。然而,对GLS1与炎症之间的关系缺乏全面的认识。在这篇综述中,我们介绍了GLS1的详细检查,并讨论了它的结构、功能和在炎症途径中的作用。在这里,我们总结了支持GLS1参与几种炎症性疾病的证据,并探讨了GLS1抑制剂的潜在治疗应用。我们发现GLS1通过介导谷氨酰胺水解在炎症中发挥重要的调节作用。针对GLS1,如通过使用GLS1抑制剂,可以有效缓解GLS1引起的炎症。此外,我们强调了研究GLS1功能和开发靶向抑制剂相关的挑战和机遇,并提出了实用的解决方案,为功能探索和发现治疗炎症性疾病的潜在疗法提供了有价值的见解。
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引用次数: 0
Identification of forsythoside A from Forsythia fruit for alleviating MAFLD via metabolic remodeling and IL-17 pathway regulation. 连翘果实中连翘苷A通过代谢重塑和IL-17通路调控缓解MAFLD的鉴定。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-25 DOI: 10.1016/j.jpha.2025.101321
Chenglin Song, Yuxi Huang, Xiaolin Sa, Linlin Wang, Mingju Yao, Zhengtong Jin, Yang Sun, Min Ye, Xue Qiao

Image 1.

图片1。
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引用次数: 0
Reactivating T cell immunity in Wnt-hyperactivated non-small cell lung cancer through a supramolecular droplet of carnosic acid and peptide. 通过鼠尾草酸和肽的超分子液滴在wnt过度激活的非小细胞肺癌中重新激活T细胞免疫。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-14 DOI: 10.1016/j.jpha.2025.101309
Na Liu, Yuzhen Tu, Hanyu Wang, Xiaoqiang Zheng, Fanpu Ji, Mingsha Geng, Xin Wei, Jingman Xin, Wangxiao He, Qian Zhao, Tianya Liu

The Wnt/β-catenin signaling pathway is renowned for its contribution to the immunosuppressive microenvironment in non-small cell lung cancer (NSCLC). Consequently, inhibiting this pathway has emerged as a promising strategy to enhance immune activation and reinstate T cell responses in cancer treatment. In this study, we initially investigate the metabolic characteristics of Wnt-hyperactivated NSCLC using mass spectroscopic detection in a mouse in-situ model and unveil its significant feature of acid accumulation at tumor sites. Building upon this discovery, we design an acid-sensitive peptide-carnosic acid (CA) supramolecular droplet (Pep1@CA), which leverages the acidic microenvironment characteristic of NSCLC for controlled release. By doing so, we aim to enhance targeting efficiency while minimizing off-target effects. As anticipated, Pep1@CA demonstrates potent tumor-specific inhibition of the Wnt signaling pathway and effectively reactivates T cell immunity in Wnt-hyperactivated NSCLC. Importantly, comprehensive in vivo evaluations reveal significant antitumor efficacy alongside excellent biosafety profiles. Collectively, this study provides a therapeutic strategy with promising clinical translational potential for targeting the Wnt signaling pathway and offers theoretical support for its application in immunotherapy. This innovative approach underscores that targeting pathways beyond traditional immunotherapy can also activate tumor immunity, thereby expanding the potential of cancer immunotherapy.

Wnt/β-catenin信号通路因其对非小细胞肺癌(NSCLC)免疫抑制微环境的贡献而闻名。因此,在癌症治疗中,抑制这一途径已成为增强免疫激活和恢复T细胞反应的一种有希望的策略。在本研究中,我们在小鼠原位模型中使用质谱检测方法初步研究了wnt超激活NSCLC的代谢特征,揭示了其在肿瘤部位酸积累的显著特征。基于这一发现,我们设计了一种酸敏感肽-鼠尾草酸(CA)超分子液滴(Pep1@CA),它利用非小细胞肺癌的酸性微环境特征进行控释。通过这样做,我们的目标是提高瞄准效率,同时尽量减少脱靶效应。正如预期的那样,Pep1@CA在Wnt过度激活的NSCLC中显示出对Wnt信号通路的有效肿瘤特异性抑制,并有效地重新激活T细胞免疫。重要的是,全面的体内评估显示显着的抗肿瘤功效以及出色的生物安全性。总之,本研究为靶向Wnt信号通路提供了一种具有临床转化潜力的治疗策略,并为其在免疫治疗中的应用提供了理论支持。这种创新的方法强调了传统免疫治疗之外的靶向途径也可以激活肿瘤免疫,从而扩大了癌症免疫治疗的潜力。
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引用次数: 0
Targeted reduction-responsive nanovehicles for photodynamic therapy-primed immunotherapy in melanoma. 用于黑色素瘤光动力免疫治疗的靶向还原反应纳米载体。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-04-11 DOI: 10.1016/j.jpha.2025.101311
Chenqian Feng, Lingfeng Zhou, Bo Chen, Hui Li, Min Mu, Rangrang Fan, Haifeng Chen, Gang Guo

Melanoma, a common malignant skin tumor, faces challenges with multidrug resistance and high recurrence rates. Combining photodynamic therapy (PDT) and immunotherapy offers a promising personalized treatment approach. However, poor water solubility and significant side effects of photosensitizers and immune checkpoint inhibitors (ICIs) limit their application. Enhancing delivery efficiency while reducing adverse effects is crucial. Herein, we formulate BM@HSSC nanoparticles (NPs), which consist of a reduction-responsive hyaluronic acid (HA) backbone modified with photosensitizer chlorin e6 (Ce6) and loaded with the programmed cell death-ligand 1 (PD-L1) inhibitor BMS-1. This system synergistically integrates PDT, immunogenic cell death (ICD), and immunotherapy for melanoma treatment. BM@HSSC NPs target and accumulate at the tumor site via the CD44 receptor. The disulfide bonds (-S-S-) in the NPs react with high glutathione (GSH) concentrations in tumor cells, rapidly releasing Ce6 and BMS-1. Under 660 nm laser irradiation, BM@HSSC NPs generate cytotoxic reactive oxygen species (ROS), inducing cell apoptosis and triggering ICD via PDT damage-associated molecular patterns (DAMPs) and tumor-associated antigens (TAAs) released from ICD promote dendritic cell (DC) maturation, enhancing antigen presentation and activating cytotoxic T lymphocytes (CTLs). Meanwhile, BMS-1 blocks the programmed cell death-1 (PD-1)/PD-L1 pathway, countering the immunosuppressive tumor microenvironment (iTME) and inhibiting tumor cell immune escape. This strategy amplifies antitumor immune responses by enhancing immunogenicity and synergizing with ICIs, resulting in robust antitumor efficacy.

黑色素瘤是一种常见的皮肤恶性肿瘤,面临着多药耐药和高复发率的挑战。结合光动力疗法(PDT)和免疫疗法提供了一种很有前途的个性化治疗方法。然而,光敏剂和免疫检查点抑制剂(ICIs)的水溶性差和明显的副作用限制了它们的应用。提高递送效率,同时减少不良影响至关重要。在此,我们制备了BM@HSSC纳米颗粒(NPs),它由光敏剂氯e6 (Ce6)修饰的还原反应透明质酸(HA)骨架组成,并加载了程序性细胞死亡配体1 (PD-L1)抑制剂BMS-1。该系统协同整合了PDT,免疫原性细胞死亡(ICD)和黑色素瘤治疗的免疫疗法。BM@HSSC NPs通过CD44受体靶向并积聚在肿瘤部位。NPs中的二硫键(- s - s -)与肿瘤细胞中高浓度的谷胱甘肽(GSH)反应,快速释放Ce6和BMS-1。在660 nm激光照射下,BM@HSSC NPs产生细胞毒性活性氧(ROS),通过PDT损伤相关分子模式(DAMPs)和ICD释放的肿瘤相关抗原(TAAs)诱导细胞凋亡并触发ICD,促进树突状细胞(DC)成熟,增强抗原呈递并激活细胞毒性T淋巴细胞(ctl)。同时,BMS-1阻断程序性细胞死亡-1 (PD-1)/PD-L1通路,对抗免疫抑制性肿瘤微环境(iTME),抑制肿瘤细胞免疫逃逸。该策略通过增强免疫原性和与ICIs的协同作用来增强抗肿瘤免疫反应,从而产生强大的抗肿瘤功效。
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引用次数: 0
Therapeutic strategies based on macrophages and their derivatives: Targeted drug delivery platforms and disease treatment. 基于巨噬细胞及其衍生物的治疗策略:靶向药物传递平台和疾病治疗。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-07-24 DOI: 10.1016/j.jpha.2025.101413
Jiali Fu, Shiyun Huang, Anqi Zhang, Rongying Shi, Yuhao Wei, Shanshan He, Shiqi Huang, Lin Li, Xun Sun, Tao Gong, Ling Zhang, Qing Lin, Zhirong Zhang

Targeted drug delivery platforms are designed to enable spatiotemporal precision in transporting therapeutic agents to disease-specific sites, thereby optimizing therapeutic efficacy and mitigating off-target adverse effects. Despite their clinical promise, these platforms remain hindered by substantial translational barriers. Macrophages, with inherent biocompatibility and intrinsic tropism toward inflamed/diseased tissues, are critically involved in diverse pathological processes. Macrophage-based drug delivery systems (MDDSs) have emerged as promising platforms engineered via therapeutic cargo loading onto intact cells, cell-membrane coatings, extracellular vesicles (EVs), or hitchhiking mechanisms. This review delineates existing MDDS platforms, critically analyzing their respective merits and constraints. We further elucidate therapeutic mechanisms and clinical implementations of MDDSs for cancer, atherosclerosis (AS), and central nervous system (CNS) disorders, while establishing a systematic taxonomy of their biomedical applications. Specifically, we highlight the transformative potential of gene-editing technologies (exemplified by chimeric antigen receptor macrophage (CAR-M) therapy and antigen-independent strategies) in innovating next-generation MDDS architectures. We summarize state-of-the-art developments, persisting translational hurdles, and optimization roadmaps for MDDSs, providing a conceptual framework to guide their translational advancement.

靶向给药平台旨在实现将治疗剂运送到特定疾病部位的时空精准性,从而优化治疗效果,减轻脱靶不良反应。尽管这些平台具有临床应用前景,但仍受到大量转化障碍的阻碍。巨噬细胞具有固有的生物相容性和对炎症/病变组织的内在趋向性,在多种病理过程中起着关键作用。巨噬细胞为基础的药物递送系统(mdds)已经成为一种有前途的平台,通过将治疗货物装载到完整细胞、细胞膜涂层、细胞外囊泡(ev)或搭便车机制来设计。本文概述了现有的MDDS平台,批判性地分析了它们各自的优点和限制。我们进一步阐明mdds对癌症、动脉粥样硬化(AS)和中枢神经系统(CNS)疾病的治疗机制和临床应用,同时建立其生物医学应用的系统分类。具体来说,我们强调了基因编辑技术(例如嵌合抗原受体巨噬细胞(CAR-M)疗法和抗原独立策略)在创新下一代MDDS架构方面的变革潜力。我们总结了mdds的最新发展,持续的转化障碍和优化路线图,提供了一个概念框架来指导他们的转化进展。
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引用次数: 0
Enhancing polyreactivity prediction of preclinical antibodies through fine-tuned protein language models. 通过微调蛋白语言模型增强临床前抗体的多反应性预测。
IF 8.9 Pub Date : 2025-12-01 Epub Date: 2025-09-08 DOI: 10.1016/j.jpha.2025.101448
Yuwei Zhou, Haoxiang Tang, Changchun Wu, Zixuan Zhang, Jinyi Wei, Rong Gong, Samarappuli Mudiyanselage Savini Gunarathne, Changcheng Xiang, Jian Huang

Therapeutic monoclonal antibodies (mAbs) have garnered significant attention for their efficacy in treating a variety of diseases. However, some candidate antibodies exhibit non-specific binding to off-target proteins or other biomolecules, leading to high polyreactivity, which can compromise therapeutic efficacy and cause other complications, thereby reducing the approval rate of antibody drug candidates. Therefore, predicting the polyreactivity risk of therapeutic mAbs at an early stage of development is crucial. In this study, we fine-tuned six pre-trained protein language models (PLMs) to predict the polyreactivity of antibody sequences. The most effective model, named PolyXpert, demonstrated a sensitivity (SN) of 90.10%, specificity (SP) of 90.08%, accuracy (ACC) of 90.10%, F1-score of 0.9301, Matthews correlation coefficient (MCC) of 0.7654, and an area under curve (AUC) of 0.9672 on the external independent test dataset. These results suggest its potential as a valuable in-silico tool for assessing antibody polyreactivity and for selecting superior therapeutic mAb candidates for clinical development. Furthermore, we demonstrated that fine-tuned language model classifiers exhibit enhanced prediction robustness compared with classifiers trained on pre-trained model embeddings. PolyXpert can be easily available at https://github.com/zzyywww/PolyXpert.

治疗性单克隆抗体(mab)因其治疗多种疾病的功效而受到广泛关注。然而,一些候选抗体与脱靶蛋白或其他生物分子表现出非特异性结合,导致高多反应性,从而影响治疗效果并引起其他并发症,从而降低了抗体候选药物的批准率。因此,在早期开发阶段预测治疗性单克隆抗体的多反应性风险是至关重要的。在这项研究中,我们对六个预先训练的蛋白质语言模型(PLMs)进行了微调,以预测抗体序列的多反应性。最有效的模型PolyXpert在外部独立测试数据集上的灵敏度(SN)为90.10%,特异性(SP)为90.08%,准确度(ACC)为90.10%,f1评分为0.9301,Matthews相关系数(MCC)为0.7654,曲线下面积(AUC)为0.9672。这些结果表明,它有潜力成为一种有价值的计算机工具,用于评估抗体多反应性,并为临床开发选择优质的治疗性单抗候选物。此外,我们证明了与预训练模型嵌入训练的分类器相比,微调语言模型分类器表现出更强的预测鲁棒性。PolyXpert可以在https://github.com/zzyywww/PolyXpert上轻松获得。
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引用次数: 0
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Journal of pharmaceutical analysis
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