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Nutritional content and renoprotective potential of miracle tree (Moringa oleifera). 神奇树辣木的营养成分及肾保护潜力。
Pub Date : 2025-06-30 eCollection Date: 2025-01-01 DOI: 10.5114/bta/204529
Vibhuti Sharma, Gaytri Mahajan, Reena Gupta

Kidney disease is a significant global health issue. This review explores the causes of renal illness, the therapeutic properties of the angiosperm Moringa oleifera, and its potential effectiveness in kidney disease management. In chronic kidney disease, inflammatory processes and immune cell activation lead to excessive free radical production, resulting in oxidative stress due to diminished antioxidant capacity. M. oleifera possesses diverse health benefits, particularly its ability to enhance antioxidant defenses. Extracts from its stem, seed, and leaf powders have been shown to increase the activity of key antioxidant enzymes, including glutathione, superoxide dismutase, and catalase. Additionally, M. oleifera modulates inflammation by reducing the activity of TNF-α, COX-2, and other pro-inflammatory cytokines. This review provides insights into the pharmacological and therapeutic potential of M. oleifera, highlighting its promise in the development of novel treatments for kidney-related disorders. Moreover, its bioactive compounds may contribute to renal tissue regeneration and protection against nephrotoxic agents.

肾脏疾病是一个重大的全球健康问题。本文综述了被子植物辣木(Moringa oleifera)的病因、治疗特性及其在肾脏疾病治疗中的潜在疗效。在慢性肾脏疾病中,炎症过程和免疫细胞激活导致过多的自由基产生,由于抗氧化能力降低而导致氧化应激。油葵具有多种健康益处,特别是其增强抗氧化防御的能力。从其茎、种子和叶粉末中提取的提取物已被证明可以增加关键抗氧化酶的活性,包括谷胱甘肽、超氧化物歧化酶和过氧化氢酶。此外,M. oleifera通过降低TNF-α, COX-2和其他促炎细胞因子的活性来调节炎症。这篇综述提供了对油橄榄的药理和治疗潜力的见解,强调了它在开发肾脏相关疾病的新疗法方面的前景。此外,其生物活性化合物可能有助于肾组织再生和对肾毒性药物的保护。
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引用次数: 0
Overexpression of UGPase and SPP genes in Nicotiana tabacum leaves causes accelerated plant development and increased biomass. 烟草叶片中UGPase和SPP基因的过表达导致植株发育加快,生物量增加。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/201460
Magdalena Rakoczy, Jan Podkowinski, Marek Figlerowicz

Background: Sucrose phosphate phosphatase (SPP) and uridine diphosphate-glucose pyrophosphorylase (UGPase) genes were overexpressed in Nicotiana tabacum to enhance the efficiency of the photosynthesis-related sucrose synthesis pathway, the primary route for incorporating newly fixed carbon into plant metabolism.

Materials and methods: To target transgene expression specifically to the leaves, the Chrysanthemum x morifolium Rubisco small subunit promoter was used.

Results: Transgenic plants overexpressing HvSPP and HvUGPase exhibited high transgene expression in the leaves, exceeding those of the corresponding N. tabacum genes by more than tenfold. These plants grew faster and entered the generative phase earlier than control plants, without showing any other developmental abnormalities. By the end of the generative phase, transgenic plants had greater dry mass and contained a higher proportion of carbohydrates than the control group. In result, they accumulated 14.9-17.5% more energy in the aboveground parts compared to reference plants.

Conclusions: The high leaf specificity of the C. x morifolium Rubisco small subunit promoter was confirmed, indicating that transgene activity in leaves was effectively separated from its effects on metabolism in non-photosynthetic tissues. Overexpression of HvUGPase and HvSPP under this promoter accelerated plant growth and development, ultimately increasing biomass. These characteristics are particularly advantageous for energy crops grown as after-crops or in regions with short growing seasons.

背景:蔗糖磷酸磷酸酶(SPP)和尿苷二磷酸-葡萄糖焦磷酸化酶(UGPase)基因在烟草中过表达,以提高光合作用相关蔗糖合成途径的效率,这是植物代谢新固定碳的主要途径。材料与方法:利用菊花Rubisco小亚基启动子在叶片上特异性表达转基因。结果:过表达HvSPP和HvUGPase的转基因植株在叶片中表现出较高的转基因表达量,比对应的烟草基因高10倍以上。这些植物比对照植物生长得更快,更早进入生殖阶段,没有表现出任何其他发育异常。在生殖阶段结束时,转基因植株比对照组具有更大的干质量和更高的碳水化合物比例。结果表明,与对照植物相比,它们在地上部分积累的能量多14.9-17.5%。结论:证实了C. x morifolium Rubisco小亚基启动子具有较高的叶片特异性,表明转基因在叶片中的活性与其对非光合组织代谢的影响有效分离。在该启动子下过表达HvUGPase和HvSPP加速了植物的生长发育,最终增加了生物量。这些特性对于作为后种作物或生长季节较短地区种植的能源作物特别有利。
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引用次数: 0
Second brain: reviewing the gut microbiome's role in lifestyle diseases. 第二大脑:回顾肠道微生物群在生活方式疾病中的作用。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/195495
Hindol Ray, Janatum Khatum, Srijan Haldar, Priyanka Bhowmik

The recent COVID-19 pandemic has highlighted another silent pandemic: lifestyle diseases. Conditions, such as cardiovascular diseases, anxiety, and type 2 diabetes (T2D), are increasingly becoming public health threats, affecting even younger populations worldwide. In recent years, extensive research has uncovered the pivotal role of the human gut microbiome in various aspects of human physiology, including metabolism, cellular homeostasis, immune defense, and disease development. The gut microbiome, often referred to as the "second brain," is now recognized as a key player in health and disease. Lifestyle factors such as diet, mental health, stress, exercise, and others significantly influence the composition of the gut microbiome. Imbalances in this composition, termed "dysbiosis," have been linked to a wide range of diseases, including cancer, cardiovascular diseases, obesity, T2D, asthma, and neurological disorders like Alzheimer's and Parkinson's disease. These findings underscore the profound influence of gut microbiome health on overall well-being. A working understanding of the gut microbiome's composition and its impact on disease processes is crucial for the advancement of personalized or precision medicine. This review article aims to explore recent advancements in the field, shedding light on how the gut microbiome contributes to the development and prognosis of lifestyle diseases.

最近的COVID-19大流行凸显了另一种无声的大流行:生活方式疾病。心血管疾病、焦虑和2型糖尿病(T2D)等疾病正日益成为公共卫生威胁,影响到全世界更年轻的人群。近年来,广泛的研究揭示了人体肠道微生物群在人体生理的各个方面的关键作用,包括代谢、细胞稳态、免疫防御和疾病发展。肠道微生物群通常被称为“第二大脑”,现在被认为是健康和疾病的关键因素。生活方式因素,如饮食、心理健康、压力、运动等,会显著影响肠道微生物群的组成。这种成分的失衡被称为“生态失调”,与多种疾病有关,包括癌症、心血管疾病、肥胖、糖尿病、哮喘以及阿尔茨海默氏症和帕金森病等神经系统疾病。这些发现强调了肠道微生物群健康对整体健康的深远影响。了解肠道微生物组的组成及其对疾病过程的影响对于个性化或精准医疗的进步至关重要。这篇综述文章旨在探讨该领域的最新进展,揭示肠道微生物群如何促进生活方式疾病的发展和预后。
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引用次数: 0
Biochemical and transcriptomic profiling analysis of drought tolerant related genes in ML 82-2 and ML 125-2 rice mutant lines. 水稻mml 82-2和mml 125-2突变系耐旱相关基因的生化和转录组学分析
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/200704
Jun Ying Low, Rhun Yian Koh, Hussein Sobri, Ahmad Faiz, Anna Pick Kiong Ling

Background: Backcrossing of gamma-irradiated IS21 with MR220 has generated progenies (ML 82-2 and ML 125-2) with improved traits. However, studies on these new mutant lines remain limited. This study aimed to determine and compare the biochemical characteristics and transcriptomic profiles of drought-tolerance-related genes in ML 82-2 and ML 125-2, as well as in the parent lines, IS21 and MR220.

Materials and methods: Seeds were germinated for 14 days under a controlled photoperiod (16 h light and 8 h darkness) at a constant temperature of 25 ± 2°C. Biochemical analyses, including total soluble protein content, specific peroxidase activity (SPA), chlorophyll content, and proline content, were conducted. Transcriptomic profiling was performed using STRING and gene ontology (GO) enrichment analysis.

Results: ML 82-2 exhibited the highest SPA, which was significantly different from that of MR220 and IS21, as well as significantly different total soluble protein content. However, ML 82-2 did not significantly differ from MR220 in chlorophyll and proline content. Drought stress-responsive genes Os01g0124401, Os08g0473900, and Os08g0518800 were identified in ML 82-2. Conversely, ML 125-2 displayed total soluble protein content and SPA similar to IS21, while chlorophyll and proline content were not significantly different from those of MR220. Drought stress-responsive genes Os10g0471100, Os01g0197100, and Os11g0701400 were identified in ML 125-2.

Conclusions: ML 82-2 demonstrated improved SPA, whereas ML 125-2 exhibited enhanced total soluble protein content. The identified genes in both mutant lines are associated with drought resistance, with most sharing a similar genomic profile with MR220. These findings contribute to plant physiology studies and stress-responsive gene discovery in rice.

背景:伽玛辐照的IS21与MR220回交产生了性状改良的后代(ml82 -2和ml125 -2)。然而,对这些新突变系的研究仍然有限。本研究旨在确定和比较mml 82-2和mml 125-2以及亲本IS21和MR220抗旱相关基因的生化特性和转录组学特征。材料和方法:种子在25±2℃的恒温条件下,在受控光周期(光照16 h,黑暗8 h)下萌发14 d。生化分析包括可溶性总蛋白含量、特定过氧化物酶活性(SPA)、叶绿素含量和脯氨酸含量。转录组学分析使用STRING和基因本体(GO)富集分析。结果:ML 82-2的SPA最高,与MR220、IS21差异显著,总可溶性蛋白含量差异显著。然而,ML 82-2与MR220在叶绿素和脯氨酸含量上没有显著差异。在ML 82-2中鉴定出干旱胁迫响应基因Os01g0124401、Os08g0473900和Os08g0518800。相反,ML 125-2的总可溶性蛋白含量和SPA与IS21相似,叶绿素和脯氨酸含量与MR220无显著差异。在ML 125-2中鉴定出干旱胁迫响应基因Os10g0471100、Os01g0197100和Os11g0701400。结论:ML 82-2表现出改善的SPA,而ML 125-2表现出提高的总可溶性蛋白含量。在这两个突变系中鉴定的基因都与抗旱性有关,其中大多数与MR220具有相似的基因组图谱。这些发现有助于水稻植物生理学研究和胁迫应答基因的发现。
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引用次数: 0
Impact of salinity on the morpho-biochemical traits of hydroponically cultivated Spinacia oleracea L. 盐度对水培菠菜形态生化性状的影响。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/202318
Archana A Naik, Shekhar D Tidke, Mahadev R Chambhare, Ravindra D Bansode, Panchshila S Kabnoorkar

Background: Spinacia oleracea, a nutrient-dense vegetable composed of 91% water, 4% starch, and 3% protein, is a staple in the Indian diet. However, salinity stress can hinder its growth. This study examines the effects of salinity on the morpho-biochemical traits of spinach in a hydroponic system.

Materials and methods: Spinach seeds were sown on coco peat, and after 10 days, the seedlings were transferred to the hydroponic setup. The plants were treated with salt concentrations of ECe 0, 4.0, 6.0, 8.0, 10.0, and 12.0 ds/m, and various morpho-biochemical parameters were assessed at 10-day intervals.

Results: In the control group, seed germination was 59.6 ± 1.45%, while increasing salt concentrations (4 to 10 dS/m) progressively reduced germination (50 ± 1.2% to 14 ± 2%). Root and shoot lengths (root: 14.16 ± 0.19 cm; shoot: 4.23 ± 0.28 cm at 4 dS/m), relative water content (47.5 ± 0.43% to 32.1 ± 0.86%), and leaf surface area (25.03 ± 0.26 to 9 ± 0.12 cm2) all declined with increasing salinity. Conversely, proline content (0.055 ± 0 to 0.12 ± 0 μg/ml) and antioxidant enzyme activity (SOD: 1.83±0.04/g protein; APX: 0.53 ± 0.1/mg protein; CAT: 0.0054 ± 0/mg protein) increased compared to the control. However, chlorophyll content (3.73 ±0.02 to 1.95 ± 0.03 mg/g at 12 dS/m) and protein content (0.13 ± 0 at 4 dS/m to 0.054 ± 0 μg/ml at 12 dS/m) decreased with rising salinity.

Conclusions: Therefore, it is concluded that spinach grown hydroponically can tolerate salt stress up to ECe 6.0 dS/m after 30 days of treatments, and more increased (8.0 to 12 dS/m) salt concentration that adversely affects overall morpho-biochemical performance.

背景:菠菜是一种营养丰富的蔬菜,由91%的水、4%的淀粉和3%的蛋白质组成,是印度人饮食中的主食。然而,盐度胁迫会阻碍其生长。本研究考察了盐度对水培系统中菠菜形态生化性状的影响。材料与方法:将菠菜种子播种在椰泥上,10 d后移栽水培。以ec0、4.0、6.0、8.0、10.0和12.0 ds/m的盐浓度处理植株,每隔10天评估各种形态生化参数。结果:对照组种子发芽率为59.6±1.45%,随着盐浓度的增加(4 ~ 10 dS/m),种子发芽率逐渐降低(50±1.2% ~ 14±2%)。根冠长(根:14.16±0.19 cm;相对含水量(47.5±0.43% ~ 32.1±0.86%)和叶表面积(25.03±0.26 ~ 9±0.12 cm2)均随盐度的增加而下降。反之,脯氨酸含量(0.055±0 ~ 0.12±0 μg/ml)和抗氧化酶活性(SOD: 1.83±0.04/g蛋白;APX: 0.53±0.1/mg蛋白;CAT: 0.0054±0/mg蛋白)较对照组升高。叶绿素含量(12 dS/m时为3.73±0.02 ~ 1.95±0.03 mg/g)和蛋白质含量(4 dS/m时为0.13±0 ~ 12 dS/m时为0.054±0 μg/ml)随盐度升高而降低。综上所述,水培菠菜在处理30 d后可耐受高达6.0 dS/m的盐胁迫,且盐浓度升高(8.0 ~ 12 dS/m)对其形态生化性能有不利影响。
{"title":"Impact of salinity on the morpho-biochemical traits of hydroponically cultivated <i>Spinacia oleracea</i> L.","authors":"Archana A Naik, Shekhar D Tidke, Mahadev R Chambhare, Ravindra D Bansode, Panchshila S Kabnoorkar","doi":"10.5114/bta/202318","DOIUrl":"10.5114/bta/202318","url":null,"abstract":"<p><strong>Background: </strong><i>Spinacia oleracea</i>, a nutrient-dense vegetable composed of 91% water, 4% starch, and 3% protein, is a staple in the Indian diet. However, salinity stress can hinder its growth. This study examines the effects of salinity on the morpho-biochemical traits of spinach in a hydroponic system.</p><p><strong>Materials and methods: </strong>Spinach seeds were sown on coco peat, and after 10 days, the seedlings were transferred to the hydroponic setup. The plants were treated with salt concentrations of ECe 0, 4.0, 6.0, 8.0, 10.0, and 12.0 ds/m, and various morpho-biochemical parameters were assessed at 10-day intervals.</p><p><strong>Results: </strong>In the control group, seed germination was 59.6 ± 1.45%, while increasing salt concentrations (4 to 10 dS/m) progressively reduced germination (50 ± 1.2% to 14 ± 2%). Root and shoot lengths (root: 14.16 ± 0.19 cm; shoot: 4.23 ± 0.28 cm at 4 dS/m), relative water content (47.5 ± 0.43% to 32.1 ± 0.86%), and leaf surface area (25.03 ± 0.26 to 9 ± 0.12 cm<sup>2</sup>) all declined with increasing salinity. Conversely, proline content (0.055 ± 0 to 0.12 ± 0 μg/ml) and antioxidant enzyme activity (SOD: 1.83±0.04/g protein; APX: 0.53 ± 0.1/mg protein; CAT: 0.0054 ± 0/mg protein) increased compared to the control. However, chlorophyll content (3.73 ±0.02 to 1.95 ± 0.03 mg/g at 12 dS/m) and protein content (0.13 ± 0 at 4 dS/m to 0.054 ± 0 μg/ml at 12 dS/m) decreased with rising salinity.</p><p><strong>Conclusions: </strong>Therefore, it is concluded that spinach grown hydroponically can tolerate salt stress up to ECe 6.0 dS/m after 30 days of treatments, and more increased (8.0 to 12 dS/m) salt concentration that adversely affects overall morpho-biochemical performance.</p>","PeriodicalId":94371,"journal":{"name":"Biotechnologia","volume":"106 1","pages":"49-62"},"PeriodicalIF":0.0,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089932/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144121897","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Expectations and limitations of biotechnology in the perspective of 2050. 展望2050年生物技术的发展前景与局限性。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/203189
Tomasz Twardowski
{"title":"Expectations and limitations of biotechnology in the perspective of 2050.","authors":"Tomasz Twardowski","doi":"10.5114/bta/203189","DOIUrl":"https://doi.org/10.5114/bta/203189","url":null,"abstract":"","PeriodicalId":94371,"journal":{"name":"Biotechnologia","volume":"106 1","pages":"3-4"},"PeriodicalIF":0.0,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089929/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144121896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of the physical, chemical, antioxidant, and antibacterial properties of Camellia oleifera Abel. seed oil. 油茶的物理、化学、抗氧化和抗菌性能评价。籽油。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/195496
Pham My Hao, Luu Thao Nguyen, Tran Thi Mai Anh, Le Pham Tan Quoc

Background: Camellia seeds are rich in oil and contain fatty acids that offer significant health benefits.

Materials and methods: This study aimed to characterize Camellia oleifera seeds and their oil. Physical properties of the seeds, including 1000-seed weight, density, moisture content, specific gravity, and angle of repose, were determined. Camellia seed oil was extracted using the pressing method, and various physicochemical and biological properties of the oil-such as density, color, acid, peroxide, and saponification values, as well as antioxidant and antibacterial activities-were assessed.

Results: Pressing the oil at 140oC yielded optimal results, achieving a recovery efficiency of 21.67%. Gas chromatography-mass spectrometry identified seven fatty acid components in the oil, with oleic acid (71.03%) being the most abundant. The antioxidant capacity of the oil was evaluated using a DPPH (2,2-diphenyl-1-picrylhydrazyl) assay, yielding an IC50 value of 265.8 mg/mL. However, the oil exhibited no inhibitory effects against four bacterial strains (Pseudomonas aeruginosa, Escherichia coli, Bacillus cereus, and Staphylococcus aureus).

Conclusions: These findings highlight the potential of Camellia seed oil in food technology, particularly as an alternative to commercial cooking oils.

背景:山茶籽富含油脂和脂肪酸,对健康有益。材料与方法:本研究旨在对油茶种子及其油分进行表征。测定种子的物理性质,包括1000粒重、密度、含水率、比重和休止角。采用压榨法提取油茶籽油,并对油茶籽油的密度、颜色、酸度、过氧化值、皂化值、抗氧化和抗菌活性等理化生物学特性进行了评价。结果:140℃压油效果最佳,采收率为21.67%。气相色谱-质谱联用鉴定出7种脂肪酸成分,其中油酸含量最高(71.03%)。采用DPPH(2,2-二苯基-1-吡啶酰肼)测定法评价其抗氧化能力,IC50值为265.8 mg/mL。然而,该油对四种细菌菌株(铜绿假单胞菌、大肠杆菌、蜡样芽孢杆菌和金黄色葡萄球菌)没有抑制作用。结论:这些发现突出了茶花籽油在食品技术中的潜力,特别是作为商业食用油的替代品。
{"title":"Evaluation of the physical, chemical, antioxidant, and antibacterial properties of <i>Camellia oleifera</i> Abel. seed oil.","authors":"Pham My Hao, Luu Thao Nguyen, Tran Thi Mai Anh, Le Pham Tan Quoc","doi":"10.5114/bta/195496","DOIUrl":"10.5114/bta/195496","url":null,"abstract":"<p><strong>Background: </strong><i>Camellia</i> seeds are rich in oil and contain fatty acids that offer significant health benefits.</p><p><strong>Materials and methods: </strong>This study aimed to characterize <i>Camellia oleifera</i> seeds and their oil. Physical properties of the seeds, including 1000-seed weight, density, moisture content, specific gravity, and angle of repose, were determined. <i>Camellia</i> seed oil was extracted using the pressing method, and various physicochemical and biological properties of the oil-such as density, color, acid, peroxide, and saponification values, as well as antioxidant and antibacterial activities-were assessed.</p><p><strong>Results: </strong>Pressing the oil at 140<sup>o</sup>C yielded optimal results, achieving a recovery efficiency of 21.67%. Gas chromatography-mass spectrometry identified seven fatty acid components in the oil, with oleic acid (71.03%) being the most abundant. The antioxidant capacity of the oil was evaluated using a DPPH (2,2-diphenyl-1-picrylhydrazyl) assay, yielding an IC50 value of 265.8 mg/mL. However, the oil exhibited no inhibitory effects against four bacterial strains (<i>Pseudomonas aeruginosa, Escherichia coli, Bacillus cereus, and Staphylococcus aureus</i>).</p><p><strong>Conclusions: </strong>These findings highlight the potential of <i>Camellia</i> seed oil in food technology, particularly as an alternative to commercial cooking oils.</p>","PeriodicalId":94371,"journal":{"name":"Biotechnologia","volume":"106 1","pages":"5-12"},"PeriodicalIF":0.0,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089931/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144121895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cutting-edge AI tools revolutionizing scientific research in life sciences. 尖端的人工智能工具革新了生命科学的科学研究。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/200803
Katarzyna Lorenc-Kukuła

Artificial intelligence (AI) is becoming a transformative force in the life sciences, pushing the boundaries of possibility. Imagine AI automating time-consuming tasks, uncovering hidden patterns in vast datasets, designing proteins in minutes instead of years, and even predicting disease outbreaks before they occur. This review explores the latest AI tools revolutionizing scientific fields, including research and data analysis, healthcare, and tools supporting scientific writing. Beyond data processing, AI is reshaping how scientists draft and share their findings, enhancing processes ranging from literature reviews to citation management. However, with great power comes great responsibility. Are we prepared for this leap? This review delves into the forefront of AI in the life sciences, where innovation meets responsibility.

人工智能(AI)正在成为生命科学领域的变革力量,推动着可能性的界限。想象一下,人工智能将耗时的任务自动化,在庞大的数据集中发现隐藏的模式,在几分钟而不是几年的时间内设计蛋白质,甚至在疾病爆发之前预测疾病。本文探讨了最新的人工智能工具对科学领域的革命性影响,包括研究和数据分析、医疗保健以及支持科学写作的工具。除了数据处理,人工智能正在重塑科学家起草和分享研究成果的方式,加强从文献综述到引文管理等一系列流程。然而,权力越大,责任越大。我们准备好迎接这一飞跃了吗?本文将深入探讨人工智能在生命科学领域的前沿,在这里创新与责任相结合。
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引用次数: 0
In silico screening and identification of CTL and HTL epitopes in the secreted virulence factors of Mycobacterium tuberculosis. 结核分枝杆菌分泌毒力因子中CTL和HTL表位的筛选与鉴定。
Pub Date : 2025-03-31 eCollection Date: 2025-01-01 DOI: 10.5114/bta/201461
Edward Kevin B Bragais, Francisco M Heralde, Kim Claudette J Fernandez, Salvador Eugenio C Caoili, Leana Rich Herrera-Ong

Background: Mycobacterium tuberculosis (MTb) is a highly infectious pathogen and a global health threat due to its resilient cell wall and immune evasion strategies. Despite the availability of the antituberculosis Bacille Calmette-Guérin (BCG) vaccine, its efficacy varies (0%-80%) and gradually decreases over time. This study aimed to identify cytotoxic T-lymphocyte (CTL) and helper T-lymphocyte (HTL) epitopes in MTb secretory proteins using immunoinformatics tools.

Materials and methods: The Protein Variability Server was used to identify highly conserved sequences, and epitope population coverage was estimated for the Southeast Asian (SEA) region. Selected epitopes were also docked to their major histocompatibility complex alleles.

Results: Five secretory proteins critical to MTb pathogenesis and virulence were identified as antigenic (antigenicity score > 0.4). Predicted epitopes had IC50 values ≤ 500 nM, indicating strong binding affinity, with an estimated 94% population coverage in SEA. All candidate epitopes were highly conserved (Shannon index ≤ 0.1) and showed no significant sequence similarity to human proteins, allergens, or toxic peptides. Docking analysis confirmed favorable binding to their corresponding HLA alleles, as indicated by low Gibbs free energy change (ΔG) values and dissociation constants (K D nM).

Conclusions: Overall, this study identified immunoactive CTL and HTL epitopes that could serve as promising candidates for future antiTB vaccine development. Further in vitro and in vivo studies are required to validate these preliminary findings.

背景:结核分枝杆菌(MTb)是一种高度传染性病原体,由于其具有弹性细胞壁和免疫逃避策略而对全球健康构成威胁。尽管有抗结核卡介苗(BCG)疫苗,但其效力各不相同(0%-80%),并随着时间的推移逐渐降低。本研究旨在利用免疫信息学工具鉴定结核分枝杆菌分泌蛋白中的细胞毒性t淋巴细胞(CTL)和辅助t淋巴细胞(HTL)表位。材料和方法:使用蛋白质变异服务器(Protein Variability Server)鉴定高度保守的序列,并估计东南亚(SEA)地区的表位人口覆盖率。选择的表位也与它们的主要组织相容性复合体等位基因对接。结果:鉴定出5个对结核分枝杆菌发病和毒力至关重要的分泌蛋白具有抗原性(抗原性评分> .4)。预测表位的IC50值≤500 nM,表明具有较强的结合亲和力,估计在SEA中具有94%的人群覆盖率。所有候选表位均高度保守(Shannon指数≤0.1),与人类蛋白、过敏原或有毒肽序列无显著相似性。对接分析证实了它们与相应HLA等位基因的良好结合,吉布斯自由能变化(ΔG)值和解离常数(K D nM)较低。结论:总的来说,本研究确定了具有免疫活性的CTL和HTL表位,这些表位可能成为未来抗结核疫苗开发的有希望的候选者。需要进一步的体外和体内研究来验证这些初步发现。
{"title":"<i>In silico</i> screening and identification of CTL and HTL epitopes in the secreted virulence factors of Mycobacterium tuberculosis.","authors":"Edward Kevin B Bragais, Francisco M Heralde, Kim Claudette J Fernandez, Salvador Eugenio C Caoili, Leana Rich Herrera-Ong","doi":"10.5114/bta/201461","DOIUrl":"10.5114/bta/201461","url":null,"abstract":"<p><strong>Background: </strong><i>Mycobacterium tuberculosis</i> (MTb) is a highly infectious pathogen and a global health threat due to its resilient cell wall and immune evasion strategies. Despite the availability of the antituberculosis Bacille Calmette-Guérin (BCG) vaccine, its efficacy varies (0%-80%) and gradually decreases over time. This study aimed to identify cytotoxic T-lymphocyte (CTL) and helper T-lymphocyte (HTL) epitopes in MTb secretory proteins using immunoinformatics tools.</p><p><strong>Materials and methods: </strong>The Protein Variability Server was used to identify highly conserved sequences, and epitope population coverage was estimated for the Southeast Asian (SEA) region. Selected epitopes were also docked to their major histocompatibility complex alleles.</p><p><strong>Results: </strong>Five secretory proteins critical to MTb pathogenesis and virulence were identified as antigenic (antigenicity score > 0.4). Predicted epitopes had IC<sub>50</sub> values ≤ 500 nM, indicating strong binding affinity, with an estimated 94% population coverage in SEA. All candidate epitopes were highly conserved (Shannon index ≤ 0.1) and showed no significant sequence similarity to human proteins, allergens, or toxic peptides. Docking analysis confirmed favorable binding to their corresponding HLA alleles, as indicated by low Gibbs free energy change (Δ<i>G</i>) values and dissociation constants (<i>K</i> <sub>D</sub> nM).</p><p><strong>Conclusions: </strong>Overall, this study identified immunoactive CTL and HTL epitopes that could serve as promising candidates for future antiTB vaccine development. Further <i>in vitro</i> and <i>in vivo</i> studies are required to validate these preliminary findings.</p>","PeriodicalId":94371,"journal":{"name":"Biotechnologia","volume":"106 1","pages":"63-76"},"PeriodicalIF":0.0,"publicationDate":"2025-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12089928/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144121924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In silico evaluation, characterization, and in vitro anticancer activity of curcumin-nimbin loaded nanoformulation in HCT-116 cell lines. 姜黄素-宁宾负载纳米制剂在HCT-116细胞系中的体外抗癌活性
Pub Date : 2024-12-19 eCollection Date: 2024-01-01 DOI: 10.5114/bta.2024.145256
Arumugam Madeswaran, Selvam Tamilazhagan, Sellappan Mohan

Colorectal cancer is one of the most prevalent malignancies worldwide and a leading cause of mortality. Chemotherapy medications are often limited in use due to issues like drug resistance, P-glycoprotein efflux, and relapse of chemotherapy. In this study, we formulated a nanosuspension with curcumin and nimbin to address these limitations and assessed its anticancer potential using in silico molecular docking and in vitro MTT assay.

Methods: In silico docking and ADMET analyses targeted proteins implicated in colorectal cancer, with doxorubicin as the standard. The docking studies were conducted using AutoDock 4.2, while in vitro anticancer activity was assessed through the MTT assay in HCT 116 cell lines.

Results: In silico docking of curcumin and nimbin showed significant interactions with target proteins compared to the standard. ADMET analysis indicated favorable Caco-2 permeability and intestinal absorption of the selected phytoconstituents. The MTT assay demonstrated concentration-dependent cell viability inhibition in HCT 116 cell lines treated with the nanosuspension, with an IC50 value of 30%.

Conclusion: The curcumin-nimbin loaded nanosuspension demonstrated promising anticancer activity against HCT 116 cell lines in both in silico and in vitro studies. Further studies are required to evaluate the anticancer effect of curcumin-nimbin loaded nanosupension through clinical and preclinical studies for the progress of potential formulation in the treatment of colorectal cancer.

结直肠癌是世界上最常见的恶性肿瘤之一,也是导致死亡的主要原因之一。化疗药物的使用往往受到诸如耐药性、p糖蛋白外排和化疗复发等问题的限制。在这项研究中,我们配制了姜黄素和宁宾纳米混悬液来解决这些局限性,并利用硅分子对接和体外MTT试验评估了其抗癌潜力。方法:以多柔比星为标准,采用硅对接和ADMET分析结直肠癌相关的靶向蛋白。对接研究使用AutoDock 4.2进行,而在HCT 116细胞系中通过MTT试验评估其体外抗癌活性。结果:与标准蛋白相比,姜黄素与宁宾的硅对接与靶蛋白有显著的相互作用。ADMET分析表明,所选植物成分具有良好的Caco-2渗透性和肠道吸收。MTT实验显示,纳米混悬液对HCT 116细胞系的细胞活力抑制呈浓度依赖性,IC50值为30%。结论:姜黄素-宁宾纳米混悬液对HCT - 116细胞株具有良好的体外抗肿瘤活性。进一步的研究需要通过临床和临床前研究来评估姜黄素-宁宾负载纳米混悬液的抗癌作用,以获得治疗结直肠癌的潜在配方的进展。
{"title":"<i>In silico</i> evaluation, characterization, and <i>in vitro</i> anticancer activity of curcumin-nimbin loaded nanoformulation in HCT-116 cell lines.","authors":"Arumugam Madeswaran, Selvam Tamilazhagan, Sellappan Mohan","doi":"10.5114/bta.2024.145256","DOIUrl":"10.5114/bta.2024.145256","url":null,"abstract":"<p><p>Colorectal cancer is one of the most prevalent malignancies worldwide and a leading cause of mortality. Chemotherapy medications are often limited in use due to issues like drug resistance, P-glycoprotein efflux, and relapse of chemotherapy. In this study, we formulated a nanosuspension with curcumin and nimbin to address these limitations and assessed its anticancer potential using <i>in silico</i> molecular docking and <i>in vitro</i> MTT assay.</p><p><strong>Methods: </strong><i>In silico</i> docking and ADMET analyses targeted proteins implicated in colorectal cancer, with doxorubicin as the standard. The docking studies were conducted using AutoDock 4.2, while <i>in vitro</i> anticancer activity was assessed through the MTT assay in HCT 116 cell lines.</p><p><strong>Results: </strong><i>In silico</i> docking of curcumin and nimbin showed significant interactions with target proteins compared to the standard. ADMET analysis indicated favorable Caco-2 permeability and intestinal absorption of the selected phytoconstituents. The MTT assay demonstrated concentration-dependent cell viability inhibition in HCT 116 cell lines treated with the nanosuspension, with an IC<sub>50</sub> value of 30%.</p><p><strong>Conclusion: </strong>The curcumin-nimbin loaded nanosuspension demonstrated promising anticancer activity against HCT 116 cell lines in both <i>in silico</i> and <i>in vitro</i> studies. Further studies are required to evaluate the anticancer effect of curcumin-nimbin loaded nanosupension through clinical and preclinical studies for the progress of potential formulation in the treatment of colorectal cancer.</p>","PeriodicalId":94371,"journal":{"name":"Biotechnologia","volume":"105 4","pages":"355-365"},"PeriodicalIF":0.0,"publicationDate":"2024-12-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11748221/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143026191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biotechnologia
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