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Smoking, alcohol and colon cancer survival is modified by immune biomarkers: a population-representative study. 免疫生物标志物改变吸烟、饮酒和结肠癌生存:一项人口代表性研究。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2026-02-03 DOI: 10.1093/carcin/bgag006
Yasemin Adali, Maurice B Loughrey, Stephanie Craig, Ronan T Gray, Jacqueline A James, Manuel Salto-Tellez, Philip D Dunne, Helen G Coleman

Lifestyle factors such as smoking and alcohol may influence colon cancer (CC) survival, but it is unclear whether their effects vary by tumour-infiltrating immune biomarkers. This study examined CC-specific survival by smoking and alcohol status, stratified by immune cell density, in a large population-based cohort. The study included 661 individuals who underwent surgery for stage II or III CC between 2004 and 2008 within two Health and Social Care (HSC) Trusts in Northern Ireland. Representative formalin-fixed, paraffin-embedded (FFPE) tumour blocks were retrieved, and immunohistochemistry (IHC) was performed on tissue microarrays constructed from both the central tumour and the invasive margin. Cox proportional hazards models were used to assess CC-specific survival, adjusting for key clinical and demographic confounders. Ever smoking, compared to never smoking, was associated with poorer CC-specific survival among individuals with lower densities of CD3+, CD4+ and FOXP3+ tumour-infiltrating immune cells. Among those with higher CD8+ cell density in the central tumour, ever smoking was linked to worse outcomes. Similar patterns were seen in the invasive margin, although these were not all statistically significant. No significant associations were observed between alcohol use and survival across any immune biomarker subgroups. Smoking was associated with poorer survival among patients with CC, and this association appears to be modified by the density of tumour-infiltrating immune cells.

吸烟和饮酒等生活方式因素可能影响结肠癌(CC)的生存,但尚不清楚它们的影响是否因肿瘤浸润性免疫生物标志物而异。本研究在一个以人群为基础的大队列中,通过免疫细胞密度分层,研究吸烟和饮酒状况对cc特异性生存率的影响。该研究包括2004年至2008年间在北爱尔兰两个健康和社会保健信托基金内接受II期或III期CC手术的661人。取出代表性的福尔马林固定、石蜡包埋(FFPE)肿瘤块,对中心肿瘤和侵袭边缘构建的组织微阵列进行免疫组化(IHC)。Cox比例风险模型用于评估cc特异性生存率,调整了关键的临床和人口混杂因素。在CD3+、CD4+和FOXP3+肿瘤浸润免疫细胞密度较低的个体中,吸烟与不吸烟相比,与较差的cc特异性生存率相关。在中心肿瘤中CD8+细胞密度较高的患者中,吸烟与更糟糕的结果有关。类似的模式也出现在侵袭性边缘,尽管这些并非都具有统计学意义。在任何免疫生物标志物亚组中,没有观察到酒精使用与生存之间的显著关联。吸烟与CC患者较差的生存率相关,并且这种关联似乎被肿瘤浸润免疫细胞的密度所改变。
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引用次数: 0
MSH2 Prevents Liver Tumorigenesis by Regulating Cell Cycle Checkpoints under Chronic Inflammation. MSH2通过调节慢性炎症下的细胞周期检查点来预防肝脏肿瘤发生。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2026-01-29 DOI: 10.1093/carcin/bgag005
Shigeharu Nakano, Atsushi Takai, Eriko Iguchi, Yosuke Fujii, Haruka Amino, Masayuki Ueno, Takahiko Ito, Mari Teramura, Masako Mishima, Ken Kumagai, Tadashi Inuzuka, Haruhiko Takeda, Yuji Eso, Takahiro Shimizu, Takahisa Maruno, Hiroshi Seno

The DNA mismatch repair (MMR) system plays a critical role in maintaining genomic integrity and preventing tumorigenesis. Although MutS homolog 2 (MSH2) is a key component of the MMR system and is dysregulated in human hepatocellular carcinoma (HCC), the molecular mechanism of MSH2 in the process of HCC development under chronic inflammatory conditions remains unclear. To investigate the function of MSH2 in inflammation-associated hepatocarcinogenesis, we treated hepatocyte-specific Msh2-knockout (Msh2 KO) mice with 0.02% thioacetamide for 30 weeks to induce chronic liver inflammation and examined their phenotype. Msh2 KO mice exhibited higher liver tumor incidence than wild-type mice, with no major differences in inflammation or fibrosis. Whole-exome sequencing analysis revealed that genetic alterations with defective MMR-associated signatures were increased in Msh2 KO tumors, though no common cancer driver genes were identified. Transcriptome analysis revealed enrichment of cell cycle-related gene sets, including the G2M checkpoint and E2F targets. Functional assays further demonstrated that MSH2 downregulation impaired ATM-CHK2-mediated DNA damage response and promoted cell cycle acceleration. MSH2 exerts its tumor-suppressive effects in hepatocytes not only through canonical MMR but also by regulating the cell cycle via the ATM-CHK2 axis.

DNA错配修复(MMR)系统在维持基因组完整性和防止肿瘤发生中起着关键作用。尽管MutS同源物2 (MSH2)是MMR系统的关键组成部分,并且在人肝细胞癌(HCC)中失调,但MSH2在慢性炎症条件下HCC发展过程中的分子机制尚不清楚。为了研究MSH2在炎症相关肝癌发生中的功能,我们用0.02%硫乙酰胺治疗肝细胞特异性MSH2敲除(MSH2 KO)小鼠30周,以诱导慢性肝脏炎症并检测其表型。Msh2 KO小鼠的肝脏肿瘤发生率高于野生型小鼠,炎症和纤维化无明显差异。全外显子组测序分析显示,Msh2 KO肿瘤中具有缺陷的mmr相关特征的遗传改变增加,尽管没有发现常见的癌症驱动基因。转录组分析显示细胞周期相关基因集的富集,包括G2M检查点和E2F靶点。功能分析进一步表明,MSH2下调会损害atm - chk2介导的DNA损伤反应,并促进细胞周期加速。MSH2在肝细胞中发挥肿瘤抑制作用,不仅通过规范的MMR,还通过ATM-CHK2轴调节细胞周期。
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引用次数: 0
Role of Colorectal Cancer-Derived Exosomes in Modulating Macrophage Phenotypes During Tumor Development. 结直肠癌衍生外泌体在肿瘤发展过程中调节巨噬细胞表型中的作用。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2026-01-20 DOI: 10.1093/carcin/bgag003
Khandu Wadhonkar, Dhruv Das, Rajani Kant Chittela, Alexander G Obukhov, Mirza S Baig

Colorectal cancer (CRC) is one of the deadliest cancer types and is characterized by a complex tumor microenvironment (TME), which includes cancer and immune cells engaging in intricate signaling crosstalk. TME is dependent on the CRC stage and contributes to cancer aggressiveness and therapy resistance. It has been established that tumor-associated immune cells can support cancer progression. However, the underlying mechanisms are not fully elucidated. Here, we provide evidence that communication between CRC and immune cells, particularly tumor-associated macrophages (TAMs), occurs through the release of soluble factors and extracellular vesicles (EVs), such as exosomes. Our study reveals that TAMs initially recognize exosomes as foreign entities, triggering a pro-inflammatory response. Over time, however, the contents of these phagocytosed exosomes reprogram the TAMs into an anti-inflammatory, tumor-supportive phenotype. Our data indicate that such a phenotypic transition in CRC TAMs is primarily triggered by the activation of the NF-kB transcription factor, and that inhibiting NF-kB signaling may significantly decrease the tumor-supportive functions of TAMs in CRC. Thus, pharmacologically slowing the transition of CRC TAMs from pro-inflammatory to tumor-supportive states may be a promising strategy to reduce cancer aggressiveness.

结直肠癌(CRC)是最致命的癌症类型之一,其特点是复杂的肿瘤微环境(TME),包括癌症和免疫细胞参与复杂的信号串扰。TME依赖于结直肠癌的分期,并有助于癌症的侵袭性和治疗耐药性。已经确定肿瘤相关的免疫细胞可以支持癌症的进展。然而,其潜在机制尚未完全阐明。在这里,我们提供的证据表明,CRC与免疫细胞,特别是肿瘤相关巨噬细胞(tam)之间的通信是通过可溶性因子和细胞外囊泡(ev)的释放发生的,如外泌体。我们的研究表明,tam最初将外泌体识别为外来实体,引发促炎反应。然而,随着时间的推移,这些被吞噬的外泌体的内容物将tam重新编程为抗炎,肿瘤支持表型。我们的数据表明,CRC tam的这种表型转变主要是由NF-kB转录因子的激活触发的,抑制NF-kB信号传导可能会显著降低CRC中tam的肿瘤支持功能。因此,从药理学上减缓CRC tam从促炎状态到肿瘤支持状态的转变可能是降低癌症侵袭性的一种有希望的策略。
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引用次数: 0
Plasma proteomic profiling identified prognostic indicators with therapeutic potential for colorectal cancer. 血浆蛋白质组学分析确定了具有治疗潜力的结直肠癌预后指标。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2026-01-14 DOI: 10.1093/carcin/bgag001
Xuan Xie, Jiahao Zhou, Qingbin Wu, Jing Sun, Chi Shu, Jun Huang, Changtao Li, Xin Wang, Xia Shen, Xue Li, Zhipeng Luo, Chuan Xu, Ziqiang Wang, Yazhou He

Plasma proteins have been reported as predictors and potential targets for reducing colorectal cancer (CRC) risk. However, their potential roles in CRC prognosis remain unexplored. We measured plasma levels of 367 neuro-related proteins in CRC patients from the West China Hospital (WCH) cohort (N=150, median follow-up=46.72 months) via proximity extension assay. The least absolute shrinkage and selection operator (LASSO) penalized Cox regression identified five overall survival (OS) - and eleven disease-free survival (DFS) - associated proteins, and the multi-protein signature for OS prediction was then validated in the UK Biobank (UKB) cohort (N=1,133). To overcome possible effects from confounders, we then employed Mendelian Randomization analysis leveraging protein quantitative trait loci (pQTLs) to investigate associations between genetically determined protein concentration and OS and cancer-specific survival (CSS) of CRC in the UKB. We found that multi-protein signature developed in the WCH cohort (c-index=0.784, 95% CI=0.713-0.855) showed significant discriminative ability in the external UKB cohort (c-index=0.616, 95%CI=0.559-0.673). A significant association between genetically determined PD-L1 and OS (p=0.043, HR=1.53, 95%CI=1.01-2.29) was observed, although we did not find strong evidence for colocalization. Additionally, single-cell and spatial transcriptome analyses illustrated PD-L1 expression localized predominantly to epithelial cells and immune cells (especially myeloid cells) in CRC tissue. The potential interactions of identified proteins were evaluated in the STRING database. Druggability evaluation also supported PD-L1 as a potential therapeutic target for CRC. Taken together, this study established multi-protein signatures for CRC prognosis and identified plasma PD-L1 as a possible biomarker and therapeutic target.

血浆蛋白已被报道为降低结直肠癌(CRC)风险的预测因子和潜在靶点。然而,它们在结直肠癌预后中的潜在作用仍未被探索。我们通过近距离延伸法测定了华西医院(WCH)队列(N=150,中位随访=46.72个月)CRC患者367种神经相关蛋白的血浆水平。最小绝对收缩和选择算子(LASSO)惩罚Cox回归确定了5种总生存期(OS)和11种无病生存期(DFS)相关蛋白,然后在UK Biobank (UKB)队列(N= 1133)中验证了OS预测的多蛋白特征。为了克服混杂因素的可能影响,我们利用孟德尔随机化分析,利用蛋白质数量性状位点(pQTLs)来研究遗传决定的蛋白质浓度与英国结直肠癌OS和癌症特异性生存(CSS)之间的关系。我们发现,在WCH队列中形成的多蛋白特征(c-index=0.784, 95%CI= 0.713-0.855)在外部UKB队列中表现出显著的区分能力(c-index=0.616, 95%CI=0.559-0.673)。我们观察到基因决定的PD-L1与OS之间存在显著关联(p=0.043, HR=1.53, 95%CI=1.01-2.29),尽管我们没有发现共定位的有力证据。此外,单细胞和空间转录组分析表明,CRC组织中PD-L1的表达主要局限于上皮细胞和免疫细胞(尤其是骨髓细胞)。鉴定蛋白的潜在相互作用在STRING数据库中进行评估。可药物性评估也支持PD-L1作为结直肠癌的潜在治疗靶点。综上所述,本研究建立了CRC预后的多蛋白特征,并确定了血浆PD-L1作为可能的生物标志物和治疗靶点。
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引用次数: 0
Microplastics in Early Onset Carcinogenesis. 微塑料在早期癌变中的作用。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2026-01-12 DOI: 10.1093/carcin/bgaf093
Anne M Bailey, Lorne J Hofseth

Plastics have become integral to modern life, but their persistence has generated vast quantities of microplastics (MPs, <5 mm) and nanoplastics (NPs, <1 µm) that now contaminate food, water, air, and human tissues. Although not yet classified as carcinogens by the International Agency for Research on Cancer, accumulating experimental and epidemiologic evidence raises concern that MPs may contribute to cancer development. Global plastic production has risen from 2 megatons in 1950 to more than 450 megatons annually in 2022, leaving behind pervasive waste that fragments into MPs and NPs. These particles act as xenobiotics, carrying toxic additives and adsorbed pollutants, provoking oxidative stress, chronic inflammation, DNA damage, and microbiome disruption; all processes central to carcinogenesis. MPs have been detected in human cancers, and animal studies show tissue accumulation, fibrosis, and genomic instability following exposure. Importantly, the proliferation of plastics parallels a global rise in early-onset cancers (diagnosed before age 50), suggesting a possible, though unproven, temporal association. Individuals born after the 1950s plastic boom have experienced continuous MP exposure beginning in utero, potentially predisposing them to carcinogenic pathways later in life. In this review, we integrate human biomonitoring data, experimental findings, and clinical observations to evaluate the emerging hypothesis that chronic MP exposure contributes to cancer risk. While causality has not been established, the biological plausibility and mounting evidence underscore the urgent need for mechanistic and epidemiologic studies to clarify the role of MPs and NPs in cancer development. It also underscores an urgent need for research into causal pathways and preventive mechanisms.

塑料已经成为现代生活不可或缺的一部分,但它们的存在产生了大量的微塑料,
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引用次数: 0
Adverse events and recent advances in CAR-T-cell therapy. car - t细胞治疗的不良事件和最新进展。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-12-26 DOI: 10.1093/carcin/bgaf083
Zhimin Bai, Xiaoyu Huang, Hui Jia, Zenghua Lin, Hong Liu

Chimeric antigen receptor (CAR-T) cell therapy has been widely used in haematological malignancies and has achieved remarkable results. However, two major toxicities of CAR-T-cell therapy, cytokine release syndrome (CRS) and immune effector cell-associated neurotoxicity syndrome (ICANS), have been reported in many studies and often require hospitalization. There is evidence that CAR-T-cell therapy is being increasingly used clinically, so it is important to pay attention to its serious adverse events that may be life-threatening. In this review, we provide a detailed discussion of the clinical manifestations, classification, risk factors, and management and treatment of serious adverse events to provide theoretical support for clinicians to manage such cases. Although the clinical application of CAR-T cells continues to expand, adverse events associated with CAR-T-cell therapy are inevitable. With the identification of risk factors and the application of various new therapeutic approaches, the incidence and severity of these adverse events can be effectively controlled.

嵌合抗原受体(CAR-T)细胞治疗已广泛应用于血液系统恶性肿瘤,并取得了显著的效果。然而,car - t细胞疗法的两个主要毒性,细胞因子释放综合征(CRS)和免疫效应细胞相关神经毒性综合征(ICANS),已经在许多研究中报道,通常需要住院治疗。有证据表明,car -t细胞疗法在临床上的应用越来越广泛,因此必须重视其可能危及生命的严重不良事件。在这篇综述中,我们就严重不良事件的临床表现、分类、危险因素、管理和治疗进行了详细的讨论,为临床医生管理这类病例提供理论支持。尽管CAR-T细胞的临床应用不断扩大,但与CAR-T细胞治疗相关的不良事件是不可避免的。随着危险因素的识别和各种新的治疗方法的应用,这些不良事件的发生率和严重程度可以得到有效控制。
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引用次数: 0
LncRNA-encoded peptide LRRC75A-AS1-ORF3 suppresses anti-tumor immunity in colorectal cancer through mitophagy-mediated attenuation of cGAS-STING signaling. lncrna编码的肽LRRC75A-AS1-ORF3通过线粒体自噬介导的cGAS-STING信号的衰减抑制结直肠癌的抗肿瘤免疫。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-12-26 DOI: 10.1093/carcin/bgaf092
Qi Wu, Zhun Li, Xinxin He, Shuhui Yu, Mengrou Zhang, Hui Mo, Saiqi He, Jianming Li, Wen Ni

Long non-coding RNAs (lncRNAs) serve as pivotal regulators of diverse physiological activities through their interactions with different biomolecules, and their aberrant expression frequently contributes to tumorigenesis and malignant progression. Emerging evidence has demonstrated that certain lncRNAs contain open reading frames that can generate useful short peptides, which influence cancer-related physiological and pathological pathways via diverse mechanisms. In this research, we identified that the lncRNA LRRC75A-AS1 encodes a conserved peptide consisting of 102 amino acids, designated as LRRC75A-AS1-ORF3. Notably, this peptide acts independently of the non-coding RNA itself to suppress anti-tumor immune responses and promote colorectal cancer progression. Mechanistically, LRRC75A-AS1-ORF3 is localized in the mitochondria, where it induces mitophagy, thereby eliminating cytosolic mitochondrial DNA (mtDNA) and downregulating the cGAS-STING signaling pathway. Our findings reveal a previously uncharacterized mechanism by which LRRC75A-AS1-ORF3 impairs anti-tumor immunity, thereby presenting a novel immunotherapeutic target for colorectal cancer treatment.

长链非编码rna (lncRNAs)通过与不同生物分子的相互作用,在多种生理活动中起关键调节作用,其异常表达经常导致肿瘤发生和恶性进展。新出现的证据表明,某些lncrna含有开放阅读框架(orf),可以产生有用的短肽,通过多种机制影响癌症相关的生理和病理途径。在本研究中,我们发现lncRNA LRRC75A-AS1编码一个由102个氨基酸组成的保守肽,命名为LRRC75A-AS1- orf3。值得注意的是,这种肽独立于非编码RNA本身,抑制抗肿瘤免疫反应,促进结直肠癌(CRC)的进展。从机制上讲,LRRC75A-AS1-ORF3定位于线粒体,诱导线粒体自噬,从而消除细胞质线粒体DNA (mtDNA),下调cGAS-STING信号通路。我们的研究结果揭示了LRRC75A-AS1-ORF3损害抗肿瘤免疫的一种先前未被描述的机制,从而为CRC治疗提供了一种新的免疫治疗靶点。
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引用次数: 0
Tumor-associated astrocytes inhibit tumor cell apoptosis through TNF-α-TNF receptor 2-NF-κB pathway in lung cancer brain metastasis. 肿瘤相关星形胶质细胞在肺癌脑转移中通过TNF-α-TNF受体2-NF-κB通路抑制肿瘤细胞凋亡。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-12-26 DOI: 10.1093/carcin/bgaf090
Shuo Zhang, Jinjin Cai, Yingying Feng, Man Yang, Yuhang Li, Yanghui Qu, Li Zhang, Chaonan Zheng, Yuan Wang

Lung cancer represents the leading cause of cancer-related mortality worldwide, with up to 50% of cases developing brain metastasis during disease progression. Current therapeutic options for brain metastasis remain limited, resulting in poor clinical outcomes. Previous studies have demonstrated that tumor cell invasion into the brain involves localized activation of astrocytes, with these tumor-associated astrocytes (TAAs) exhibiting either pro-tumor or anti-tumor effects. However, the role of astrocytes during postcolonization stages remains unclear. In this study, employing both a murine model of lung cancer brain metastasis and an in vitro coculture system, we identified the presence of astrocytes within the tumor microenvironment of both clinical specimens and experimental models. Our in vitro experiments revealed that astrocytes significantly enhanced tumor cell survival without affecting proliferation, primarily through inhibition of apoptosis. Mechanistic investigations demonstrated that astrocyte-derived TNF-α mediates this anti-apoptotic effect via activation of the NF-κB signaling pathway in tumor cells. Genetic knockdown of TNF receptor 2 (TNFR2) in tumor cells or pharmacological inhibition of the NF-κB pathway effectively abolished this protective effect. Importantly, TNFR2 knockdown increased intracranial tumor cell apoptosis and prolonged survival in the brain metastasis mouse model. These findings collectively demonstrate that TAAs in lung cancer brain metastasis promote tumor cell survival through a TNFR2-NF-κB-dependent mechanism mediated by TNF-α secretion.

肺癌是全球癌症相关死亡的主要原因,高达50%的病例在疾病进展过程中发生脑转移。目前脑转移的治疗选择仍然有限,导致临床结果不佳。先前的研究表明,肿瘤细胞侵入大脑涉及星形胶质细胞的局部激活,这些肿瘤相关的星形胶质细胞(TAAs)表现出促肿瘤或抗肿瘤的作用。然而,星形胶质细胞在后定植阶段的作用仍不清楚。在本研究中,我们采用小鼠肺癌脑转移模型和体外共培养系统,在临床标本和实验模型的肿瘤微环境中都发现了星形胶质细胞。我们的体外实验表明,星形胶质细胞主要通过抑制细胞凋亡,在不影响增殖的情况下显著提高肿瘤细胞的存活率。机制研究表明,星形胶质细胞来源的TNF-α通过激活肿瘤细胞的NF-κB信号通路介导这种抗凋亡作用。肿瘤细胞中TNF受体2 (TNFR2)的基因敲低或NF-κB通路的药理抑制有效地消除了这种保护作用。重要的是,在脑转移小鼠模型中,TNFR2敲低增加了颅内肿瘤细胞凋亡并延长了生存期。这些结果共同表明,肺癌脑转移TAAs通过TNF-α分泌介导的TNFR2-NF-κ b依赖性机制促进肿瘤细胞存活。
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引用次数: 0
Genomic and transcriptomic characterization of gamma ray- and heavy-ion-induced precursor B-cell lymphomas in B6C3F1 mice: radiation-type-dependent interstitial chromosomal deletions at tumor-suppressor gene loci. γ射线和重离子诱导的B6C3F1小鼠前体b细胞淋巴瘤的基因组和转录组学特征:肿瘤抑制基因位点的辐射类型依赖性间质染色体缺失。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-12-26 DOI: 10.1093/carcin/bgag002
Kenta Amano, Hirotaka Tachibana, Chizuru Tsuruoka, Kazuhiro Daino, Takamitsu Morioka, Yi Shang, Atsuko Ishikawa, Tatsuhiko Imaoka, Akira Matsuura, Shizuko Kakinuma

Epidemiological studies have revealed that ionizing radiation is a risk factor for acute lymphoblastic leukemia. Humans can be exposed to radiation via clinical radiotherapies or spaceflight, yet our knowledge of the potential carcinogenic effects of various types of radiation remains incomplete. To address this shortcoming, we analyzed the development of precursor B-cell lymphoma (pBL) in B6C3F1 mice after irradiation with gamma rays or heavy ions (carbon, silicon, argon, or iron ions) followed by array comparative genomic hybridization, whole-exome sequencing, and RNA-sequencing analyses. Heavy-ion irradiation predominantly induced late-onset pBLs. In addition, chromosomal deletions in late-onset pBLs depended on radiation type: gamma-ray-induced pBLs had interstitial deletions of chromosome 8 (del8) affecting the tumor-suppressor gene Cyld, whereas silicon-ion-induced pBLs had interstitial deletions of chromosome 19 (del19) affecting the tumor-suppressor genes Cd274, Pten, and Fas; notably, carbon ions induced both types of pBL and no pBLs harbored these deletions in the argon- or iron-ion-irradiated mice. Late-onset pBLs were classified into two clusters with differential mutation patterns based on their gene-expression profiles, and pBLs with del8 and del19 were classified into different gene-expression clusters. Furthermore, the mutational and transcriptomic profiles of the late-onset del8 pBLs were reminiscent of human activated B-cell-like diffuse large B-cell lymphoma (DLBCL), whereas those of the del19 pBLs resembled germinal center B-cell-like DLBCL. These results establish the molecular signatures in radiation-induced pBLs that depend on radiation type, which will help improve both targeted molecular therapies for patients and risk assessment after exposure.

流行病学研究表明,电离辐射是急性淋巴细胞白血病的危险因素。人类可以通过临床放射治疗或太空飞行暴露在辐射中,但我们对各种类型的辐射的潜在致癌作用的了解仍然不完整。为了解决这一缺陷,我们分析了伽玛射线或重离子(碳、硅、氩或铁离子)照射后B6C3F1小鼠前体b细胞淋巴瘤(pBL)的发展,随后进行了阵列比较基因组杂交、全外显子组测序和RNA测序分析。重离子辐照主要诱导迟发性多氯联苯。此外,迟发性pbl的染色体缺失依赖于辐射类型:伽马射线诱导的pbl有影响肿瘤抑制基因Cyld的8号染色体(del8)的间质缺失,而硅离子诱导的pbl有影响肿瘤抑制基因Cd274、Pten和Fas的19号染色体(del19)的间质缺失;值得注意的是,碳离子诱导了两种类型的pBL,而在氩或铁离子照射的小鼠中,没有pBL携带这些缺失。根据基因表达谱,将迟发性pbl分为两类具有不同突变模式的簇,将del8和del19的pbl分为不同的基因表达簇。此外,迟发性del8 pBLs的突变和转录组学特征与人活化b细胞样弥漫性大b细胞淋巴瘤(DLBCL)相似,而del19 pBLs的突变和转录组学特征与生发中心b细胞样DLBCL相似。这些结果建立了辐射诱导pbl中依赖于辐射类型的分子特征,这将有助于改善患者的靶向分子治疗和暴露后的风险评估。
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引用次数: 0
CarD-T: an automated pipeline for the nomination and analysis of potential human carcinogens. 卡- t:一个自动管道提名和分析潜在的人类致癌物。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-12-26 DOI: 10.1093/carcin/bgaf074
Jamey O'Neill, Gudur Ashrith Reddy, Nermeeta Dhillon, Osika Tripathi, Ludmil Alexandrov, Parag Katira

The identification and classification of carcinogens is critical in cancer epidemiology, necessitating updated methodologies to manage the burgeoning biomedical literature. We introduce the Carcinogen Detection via Transformers (CarD-T) framework, combining transformer-based machine learning with probabilistic analysis to efficiently nominate potential carcinogens from scientific texts. Trained on 60% of established carcinogens, CarD-T correctly identifies all remaining known carcinogens and nominates ∼1600 potential new carcinogens. Comparative assessment against GPT-4 reveals CarD-T's comparable precision (0.896 versus 0.903), and superior recall (0.853 versus 0.757), implying an improved ability to nominate potential carcinogens for further evaluation. CarD-T associates each nominated entity with relevant scientific literature, allowing for additional analysis of conflicting implications over time through a Bayesian probabilistic carcinogen denomination analysis. The framework also provides rich insights into carcinogenesis associated research, revealing significant shifts in research focus on carcinogenic agents over time, from chemical carcinogens to broader categories including biological agents, environmental factors and lifestyle choices. We establish the CarD-T framework as a locally deployable, computationally inexpensive, and robust tool for identifying and nominating potential carcinogens from vast biomedical literature. This framework enhances the agility of public health responses to carcinogen identification, setting a new benchmark for automated, scalable toxicological investigations.

致癌物的识别和分类在癌症流行病学中至关重要,需要更新的方法来管理新兴的生物医学文献。我们引入了通过变压器进行致癌物检测(CarD-T)框架,将基于变压器的机器学习与概率分析相结合,从科学文本中有效地指定潜在致癌物。经过对60%的已知致癌物的训练,CarD-T可以正确识别所有剩余的已知致癌物,并提名约1600种潜在的新致癌物。与GPT-4的比较评估显示,CarD-T具有相当的精度(0.896 vs 0.903)和更高的召回率(0.853 vs 0.757),这意味着CarD-T在确定潜在致癌物以供进一步评估方面的能力有所提高。CarD-T将每个被提名的实体与相关的科学文献联系起来,允许通过贝叶斯概率致癌物命名(PCarD)分析对冲突的影响进行额外的分析。该框架还为致癌相关研究提供了丰富的见解,揭示了随着时间的推移,研究重点在致癌物质上的重大转变,从化学致癌物到更广泛的类别,包括生物制剂、环境因素和生活方式选择。我们将CarD-T框架建立为一种可在本地部署、计算成本低廉且强大的工具,用于从大量生物医学文献中识别和提名潜在致癌物。这一框架提高了公共卫生部门对致癌物鉴定反应的灵活性,为自动化、可扩展的毒理学调查设定了新的基准。
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引用次数: 0
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Carcinogenesis
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