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Associations of prediagnostic serum liver enzyme levels with lung cancer risk in predominantly low-income African and European Americans. 诊断前血清肝酶水平与主要低收入非洲和欧洲裔美国人肺癌风险的关系
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-09-04 DOI: 10.1093/carcin/bgaf052
Shuai Xu, Hui Cai, Jie Wu, Jiajun Shi, Regina Courtney, Hyung-Suk Yoon, Xiao-Ou Shu, William J Blot, Wei Zheng, Qiuyin Cai

Previous studies have linked liver diseases to lung cancer (LC) risk; however, few studies evaluated the associations of circulating liver enzyme levels with LC risk. We conducted a study of 353 incident LC cases and 646 matched controls with baseline serum alanine aminotransferase (ALT) and of 548 cases and 1032 matched controls with baseline serum alkaline phosphatase (ALP) nested within the Southern Community Cohort Study. Conditional logistic regression and generalized linear models were used to estimate adjusted odds ratios (ORs) and 95% confidence intervals (CIs) among all study participants and by stratification of potential effect modifiers. Most participants had clinically normal liver enzyme levels. Higher serum ALT levels were associated with reduced LC risk. Compared with the lowest tertile, participants in the second and third tertiles had OR (95% CI) of 0.74 (0.48-1.14) and 0.47 (0.28-0.78) (Ptrend < .01), respectively. The inverse association was observed in African Americans (AAs) and European Americans, which was especially prominent among men, and was seen in both those diagnosed within [ORT3 versus T1 = 0.41 (0.19-0.88)] and beyond [ORT3 versus T1 = 0.35 (0.17-0.73)] a median follow-up time of 39 months. Higher serum ALP levels were associated with increased LC risk among AA men only [ORT3 versus T1 = 2.01 (1.19-3.39)] (Ptrend < .01). Our results indicate that in a predominantly low-income American population, higher serum ALT levels may be related to lower LC risk. Further studies are warranted to confirm our findings and elucidate the potential underlying biological mechanisms of the associations.

先前的研究将肝脏疾病与肺癌(LC)风险联系起来;然而,很少有研究评估循环肝酶水平与LC风险的关系。我们在南方社区队列研究中对353例LC病例和646例基线血清丙氨酸转氨酶(ALT)匹配对照以及552例基线血清碱性磷酸酶(ALP)匹配对照进行了研究。使用条件逻辑回归和广义线性模型估计所有研究参与者的调整优势比(ORs)和95%置信区间(ci),并对潜在效应修饰因子进行分层。大多数参与者的肝酶水平临床正常。血清ALT水平升高与LC风险降低相关。与最低分位相比,第二和第三分位参与者的OR (95% CI)分别为0.74(0.48-1.14)和0.47 (0.28-0.78)(p趋势< 0.01)。在非裔美国人和欧裔美国人中观察到负相关,在男性中尤为突出,并且在中位随访时间为39个月的[ORT3 vs T1 =0.41(0.19-0.88)]和超过[ORT3 vs T1 = 0.35(0.17-0.73)]的患者中都可以看到。高血清ALP水平仅与AA男性LC风险增加相关[ORT3 vs T1 = 2.01 (1.19-3.39)] (p趋势)
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引用次数: 0
A novel serum biomarker Enhancer RNA RASSF8-AS1 promotes the progression of gastric cancer. 一种新的血清生物标志物增强子RNA RASSF8-AS1促进胃癌的进展。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-09-04 DOI: 10.1093/carcin/bgaf050
Xun Li, Xiaojue Chen, Bairong Chen, Xinliang Gu, Xiuyu Chu, Xianjuan Shen, Shaoqing Ju

Gastric cancer (GC) is globally recognized as one of the most widespread malignant tumors. As the symptoms of patients with early GC are ambiguous, the majority of patients are given a diagnosis of advanced GC. Therefore, this necessitates the search for new biomarkers to be utilized in the early diagnosis and screening of GC. Enhancer RNA (eRNA) is a non-coding RNA in transcription by enhancers that is tumor-specific and has a critical function in cancer progression. Our research investigates new eRNAs as bio-diagnostic markers for GC. Four eRNAs with good differential expression in GC were screened by TCGA and University of California, Santa Cruz databases. Quantitative real-time PCR was utilized for testing the level of RASSF8-AS1. The diagnostic effect of RASSF8-AS1 was evaluated using the receiver operating characteristic (ROC). Functional experiments were used to detect the ability of RASSF8-AS1 to affect the metastasis and proliferation in GC cells. The expression of RASSF8-AS1 was obviously elevated in both GC tissues and serum, whereas it was decreased in the serum levels of postoperative GC patients. ROC showed that RASSF8-AS1 was more diagnostically efficient than common diagnostic biomarkers for GC and that diagnostic effectiveness could be better than combining them. The findings of in vitro experiments showed that knocking down the level of RASSF8-AS1 clearly suppressed the ability of growth and metastasis in GC cells. Studies have shown that serum RASSF8-AS1 has the potential to contribute to the progression of GC as a biomarker for diagnosis and prognostic monitoring of GC.

胃癌(Gastric cancer, GC)是全球公认的分布最广的恶性肿瘤之一。由于早期胃癌患者的症状不明确,大多数患者被诊断为晚期胃癌。因此,这就需要寻找新的生物标志物用于GC的早期诊断和筛查。增强子RNA (Enhancer RNA, eRNA)是一种由增强子转录的非编码RNA,具有肿瘤特异性,在癌症进展中起关键作用。我们的研究探讨了新的erna作为GC的生物诊断标志物。通过TCGA和美国加州大学圣克鲁兹分校数据库筛选出4个在GC中有良好差异表达的erna。采用实时荧光定量PCR检测RASSF8-AS1的表达水平。采用受试者工作特征(ROC)评价RASSF8-AS1的诊断效果。功能实验检测RASSF8-AS1对胃癌细胞转移和增殖的影响。RASSF8-AS1在胃癌组织和血清中的表达均明显升高,而在胃癌术后患者的血清中表达则明显降低。ROC结果显示,RASSF8-AS1对GC的诊断效率高于常见的诊断生物标志物,其诊断效果可能优于两者的结合。体外实验结果表明,敲低RASSF8-AS1水平可明显抑制胃癌细胞的生长和转移能力。研究表明,血清RASSF8-AS1作为胃癌诊断和预后监测的生物标志物,有可能促进胃癌的进展。
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引用次数: 0
Correction to: p62/SQSTM1 interacts with vimentin to enhance breast cancer metastasis. 修正:p62/SQSTM1与vimentin相互作用促进乳腺癌转移
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-09-04 DOI: 10.1093/carcin/bgaf042
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引用次数: 0
HECTD3 E3 ligase mediates ubiquitination of AKT-phosphorylated CMTM3 in HER2-overexpressed breast cancer cells. 在her2过表达的乳腺癌细胞中,hector 3 E3连接酶介导akt磷酸化的CMTM3泛素化。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-09-04 DOI: 10.1093/carcin/bgaf048
Jun Wang, Delong Wang, Xinxing Zhang, Xiaoyang Xu

CKLF-like MARVEL transmembrane domain-containing (CMTM) proteins play pivotal roles in tumorigenesis and cancer progression across various malignancies. However, their expression profiles and regulatory mechanisms in distinct subtypes of breast cancer remain largely undefined. In this study, we systematically analysed the expression of all nine CMTM family members across major molecular subtypes of breast cancer, including Luminal A, Luminal B, HER2-positive (HER2+), and triple-negative breast cancer (TNBC). Among these, CMTM3 was uniquely downregulated in Luminal B and HER2+ breast cancer cells and functioned as a tumor suppressor. Overexpression of HER2 in normal breast epithelial cell lines led to the phosphorylation of CMTM3. Molecular and biochemical analyses revealed that HER2 overexpression activated the downstream phosphoinositide 3-kinase (PI3K)/protein kinase B (also known as RAC-Alpha Serine/Threonine-Protein Kinase, AKT) signaling pathway in Luminal B and HER2+ breast cancer cells. AKT1 directly phosphorylated CMTM3 at serine 181 (Ser181), a modification that facilitated its recognition and ubiquitination by the E3 ligase HECT domain E3 ubiquitin protein ligase 3 (HECTD3), ultimately targeting CMTM3 for proteasomal degradation. Functional assays demonstrated that either knockdown of HECTD3 or pharmacological inhibition of PI3K/AKT signaling stabilized CMTM3 protein levels. Moreover, reintroducing a nonphosphorylatable CMTM3 mutant (CMTM3S181A) into CMTM3 knockout breast cancer cells resulted in significantly reduced proliferation, colony formation, invasive capacity, and in vivo tumor growth compared with cells expressing wild-type CMTM3 (CMTM3WT). Collectively, these findings reveal a previously unrecognized posttranslational regulatory mechanism of CMTM3 and suggest that targeting the PI3K/AKT-HECTD3-CMTM3 axis may offer a promising therapeutic approach for treating HER2+ breast cancers.

CMTM (cklf样漫威跨膜结构域)蛋白在各种恶性肿瘤的发生和癌症进展中起关键作用。然而,它们在不同亚型乳腺癌中的表达谱和调控机制在很大程度上仍未明确。在这项研究中,我们系统地分析了所有9个CMTM家族成员在乳腺癌主要分子亚型中的表达,包括Luminal A、Luminal B、HER2阳性(HER2+)和三阴性乳腺癌(TNBC)。其中,CMTM3在Luminal B和HER2+乳腺癌细胞中唯一下调,并作为肿瘤抑制因子发挥作用。正常乳腺上皮细胞系中HER2的过表达导致CMTM3的磷酸化。分子和生化分析表明,HER2过表达激活了Luminal B和HER2+乳腺癌细胞中下游磷酸肌肽3激酶(PI3K)/蛋白激酶B (AKT)信号通路。AKT1直接磷酸化CMTM3丝氨酸181 (Ser181),这一修饰促进了其被E3连接酶hector 3 (HECT结构域E3泛素蛋白连接酶3)识别和泛素化,最终靶向CMTM3进行蛋白酶体降解。功能分析表明,抑制hector 3或药理抑制PI3K/AKT信号通路均可稳定CMTM3蛋白水平。此外,将非磷酸化CMTM3突变体(CMTM3S181A)重新引入CMTM3敲除的乳腺癌细胞中,与表达野生型CMTM3 (CMTM3WT)的细胞相比,其增殖、集落形成、侵袭能力和体内肿瘤生长显著降低。总的来说,这些发现揭示了CMTM3的翻译后调控机制,并提示靶向PI3K/ akt - hector 3-CMTM3轴可能为治疗HER2+乳腺癌提供了一种有希望的治疗方法。
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引用次数: 0
Radiation effects research foundation-a view to the future. 辐射效应研究基金会——展望未来。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-09-04 DOI: 10.1093/carcin/bgaf061
Joe W Gray, Andrew P Feinberg
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引用次数: 0
Urinary metabolites in association with kidney cancer risk. 尿代谢产物与肾癌风险的关系
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2025-04-03 DOI: 10.1093/carcin/bgaf029
Thuraya Al-Sayegh, Shuang Song, Loren Lipworth, Hui Cai, Qing Lan, Yutang Gao, Nathaniel Rothman, Qiuyin Cai, Wei Zheng, Xiao-Ou Shu

Kidney cancer incidence has increased worldwide in recent decades. While metabolomic studies have shown promise in unveiling mechanisms underlying disease development, few studies have investigated prediagnostic urinary metabolites and kidney cancer risk. We conducted a case-control study nested within the Shanghai Women's and Men's Health Studies to prospectively investigate the association between urinary metabolites and kidney cancer risk to understand its etiology and the underlying biological mechanisms. Two hundred primary kidney cancer cases and their individually matched controls were included. A total of 1301 metabolites were evaluated, and 67 metabolites were found nominally associated with kidney cancer using conditional logistic regression. After backward selection, 11 urine metabolites remained significantly associated with kidney cancer: lipids (e.g. picolinoylglycine, odds ratio [OR]; 95% confidence interval [CI]: 2.01 [1.44, 2.79], and pregnanediol-3-glucuronide, OR; 95% CI: 0.56 [0.39, 0.82]), xenobiotics (e.g. beta-guanidinopropanoate, OR; 95% CI: 1.75 [1.32, 2.32] and 4-vinylphenol sulfate, OR; 95% CI: 0.66 [0.49, 0.90]), and nucleotides (e.g. allantoic acid, OR; 95% CI: 0.71 [0.54, 0.92]). Time lag analysis showed that metabolite-kidney cancer associations were stronger for beta-guanidinopropanoate (OR; 95% CI: 8.22 [1.68, 40.18]) and picolinoylglycine (OR; 95% CI: 6.45 [1.28, 32.43]), but weaker for allantoic acid (OR; 95% CI: 0.87 [0.37, 2.06]) and 3-methylglutarate/2-methylglutarate (OR; 95% CI: 0.62 [0.19, 2.00]) when urinary samples were collected within 3 years between urine sample collection and cancer diagnosis (Pinteraction < .05 for all). Future metabolomics studies with large sample sizes, particularly from multiple ancestry populations, are needed to validate our findings.

近几十年来,肾癌的发病率在全球范围内呈上升趋势。虽然代谢组学研究在揭示疾病发展机制方面显示出希望,但很少有研究调查诊断前尿代谢物和肾癌风险。我们在上海市女性和男性健康研究中进行了一项病例对照研究,前瞻性地研究了尿代谢物与肾癌风险之间的关系,以了解其病因和潜在的生物学机制。纳入了200例原发性肾癌病例及其单独匹配的对照。总共评估了1,301种代谢物,使用条件逻辑回归发现67种代谢物与肾癌名义上相关。逆向选择后,11种尿液代谢物仍与肾癌显著相关:脂质(如吡啶酰甘氨酸,比值比(OR);95%置信区间(CI): 2.01[1.44, 2.79],妊娠二醇-3-葡糖苷,OR;95% CI: 0.56[0.39, 0.82])、外源性药物(如β -胍基丙酸,OR;95% CI: 1.75[1.32, 2.32]和4-乙烯基苯酚硫酸盐,OR;95% CI: 0.66[0.49, 0.90])和核苷酸(如尿囊酸,OR;95% ci: 0.71[0.54, 0.92])。时差分析显示,β -胍基丙酸(OR)的代谢与肾癌的相关性更强;95%CI: 8.22[1.68, 40.18])和picolinoylglycine (OR;95% CI: 6.45[1.28, 32.43]),但尿囊酸较弱(OR;95%CI: 0.87[0.37, 2.06])和3-甲基戊二酸/2-甲基戊二酸(OR;95%CI: 0.62 [0.19, 2.00])
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引用次数: 0
Chemoresistance and immune evasion in hepatocellular carcinoma: the role of miRNA-425-5p. 肝癌化疗耐药和免疫逃逸:miRNA-425-5p的作用。
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2025-04-03 DOI: 10.1093/carcin/bgaf012
Xinghe Pan, Junliang Liu, Yitong Zhang, Chenglin Sun, You Li

Hepatocellular carcinoma (HCC) represents a significant global health challenge, with chemoresistance severely limiting treatment efficacy. This study investigates the role of miRNA-425-5p in exosomes in modulating the tumor microenvironment (TME) and contributing to chemoresistance and immune evasion in HCC. Differentially expressed miRNAs were identified using TaqMan low-density array technology in serum samples from XELOX-resistant and -sensitive HCC patients. miRNA-425-5p expression was validated using quantitative reverse transcription polymerase chain reaction (qRT-PCR). Exosomes from HCC cell lines were characterized by transmission electron microscopy and nanoparticle tracking analysis. Functional assays, including luciferase reporter assays and flow cytometry, elucidated the mechanisms of miRNA-425-5p. In vivo studies with mouse xenograft models evaluated the impact of miRNA-425-5p on tumor growth and chemosensitivity. miRNA-425-5p was significantly upregulated in the serum of XELOX-resistant HCC patients and correlated with poorer survival outcomes. Exosomes from chemoresistant HCC cells exhibited increased levels of miRNA-425-5p, which, when internalized by CD4+ T cells, promoted regulatory T cell (Treg) expansion by targeting phosphatase and tensin homolog (PTEN). In vivo, miRNA-425-5p overexpression enhanced tumor growth and chemoresistance, while its inhibition reduced tumor size and increased chemosensitivity. These findings indicate that miRNA-425-5p in exosomes plays a crucial role in HCC chemoresistance and immune evasion by modulating the TME and promoting Treg expansion through PTEN targeting. miRNA-425-5p serves as a potential biomarker for predicting chemoresistance and a therapeutic target for overcoming drug resistance in HCC.

肝细胞癌(HCC)是一个重大的全球健康挑战,化疗耐药性严重限制了治疗效果。本研究探讨了外泌体中miRNA-425-5p在HCC中调节肿瘤微环境(TME)和促进化疗耐药和免疫逃避中的作用。使用TaqMan低密度阵列技术在xelox耐药和敏感HCC患者的血清样本中鉴定了差异表达的mirna。采用定量逆转录聚合酶链反应(qRT-PCR)验证miRNA-425-5p的表达。通过透射电镜(TEM)和纳米颗粒跟踪分析(NTA)对肝癌细胞系外泌体进行了表征。功能分析,包括荧光素酶报告基因检测和流式细胞术,阐明了miRNA-425-5p的作用机制。小鼠异种移植模型的体内研究评估了miRNA-425-5p对肿瘤生长和化疗敏感性的影响。miRNA-425-5p在xelox耐药HCC患者血清中显著上调,并与较差的生存结果相关。来自化疗耐药HCC细胞的外泌体表现出miRNA-425-5p水平升高,当其被CD4+ T细胞内化时,通过靶向PTEN促进调节性T细胞(Treg)扩增。在体内,miRNA-425-5p过表达可促进肿瘤生长和化疗耐药,而其抑制作用可减小肿瘤大小并增加化疗敏感性。这些发现表明,外泌体中的miRNA-425-5p通过PTEN靶向调节TME和促进Treg扩增,在HCC化疗耐药和免疫逃避中起着至关重要的作用。miRNA-425-5p是预测肝癌化疗耐药的潜在生物标志物,也是克服肝癌耐药的治疗靶点。
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引用次数: 0
Co-targeting KRASG12D and the HER family is efficacious in colorectal cancer. 联合靶向KRASG12D和HER家族治疗结直肠癌有效。
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-04-03 DOI: 10.1093/carcin/bgaf036
Mary Kate Kilroy-Gehret, Cecilia Wischmeier, SoYoung Park, Daniel Choi, Wasim Feroz, Rosalin Mishra, Joan T Garrett

Colorectal cancer (CRC) is the second leading cause of cancer deaths worldwide, with roughly 41% of CRC cases harboring a KRAS mutation. Acquired resistance to KRAS-targeted treatments has occurred with mechanisms including increased HER family expression among other receptor tyrosine kinases. HER3, a member of the HER family that is kinase impaired, has been shown to be a resistance mechanism upon inhibition of the HER family and downstream targets, including RAS/MEK/ERK and PI3K/AKT. We find that KRAS mutations tend to co-occur with HER3 alterations in a large panel of cancers and in CRCs. Our results show that both total and activated HER3 levels increase in CRC patient-derived organoids and cell lines after treatment with KRASG12D targeted agents, indicating that HER3 could be a potential adaptive response mechanism to KRAS-targeted therapy. Further, we found that genetic knock-down of KRAS and HER3 resulted in a reduction in the growth of CRC cells compared to a single knockdown of either KRAS or HER3. We observed that kinase-impaired HER3 binding partners, as assessed by immunoprecipitation, is cell dependent with EGFR binding HER3 in one cell line. After co-treating CRC cells with pan-HER inhibitors in combination with MRTX1133, a KRASG12D inhibitor, synergistic and additive effects in the reduction in cell growth were observed. Finally, we found that co-targeting KRASG12D mutant cells with a KRASG12D inhibitor and a HER3 antibody-drug conjugate further reduced cell viability. We posit that co-targeting both KRASG12D and HER3, whether directly or indirectly, is a potential therapeutic strategy in CRC patients.

结直肠癌(CRC)是全球癌症死亡的第二大原因,大约41%的CRC病例携带KRAS突变。对kras靶向治疗的获得性耐药发生的机制包括HER家族在其他受体酪氨酸激酶中的表达增加。HER3是HER家族中激酶受损的成员,已被证明是抑制HER家族和下游靶点(包括RAS/MEK/ERK和PI3K/AKT)的耐药机制。我们发现KRAS突变倾向于与HER3突变共同发生在大量癌症和crc中。我们的研究结果表明,KRASG12D靶向药物治疗后,CRC患者衍生的类器官和细胞系中总HER3和活化HER3水平均升高,表明HER3可能是kras靶向治疗的潜在适应性反应机制。此外,我们发现,与KRAS或HER3的基因敲低相比,KRAS和HER3的基因敲低导致结直肠癌细胞的生长减少。我们观察到,通过免疫沉淀评估,在一个细胞系中,激酶受损的HER3结合伙伴与EGFR结合HER3是细胞依赖性的。pan-HER抑制剂与KRASG12D抑制剂MRTX1133联合治疗CRC细胞后,观察到细胞生长减少的协同效应和加性效应。最后,我们发现KRASG12D抑制剂和HER3抗体-药物偶联物共同靶向KRASG12D突变细胞进一步降低了细胞活力。我们假设KRASG12D和HER3共同靶向,无论是直接还是间接,都是CRC患者的潜在治疗策略。
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引用次数: 0
Genome-wide association study of early-stage non-small cell lung cancer prognosis: a pooled analysis in the International Lung Cancer Consortium. 早期非小细胞肺癌预后的全基因组关联研究:国际肺癌协会的汇总分析
IF 2.9 3区 医学 Q2 ONCOLOGY Pub Date : 2025-04-03 DOI: 10.1093/carcin/bgaf031
Mei Dong, Abhinav Thakral, Karl Smith- Byrne, Yohan Bosse, Hufeng Zhou, Yi Zhang, Joshua Atkins, Philip Haycock, M Catherine Brown, Kiera Murison, Wim Timens, Don D Sin, Jui Kothari, Aurélie A G Gabriel, David Zaridze, Milan Savic, Jolanta Lissowska, Beata Świątkowska, Vladimir Janout, Ivana Holcatova, Anush Mukeria, Guillermo Fernandez-Tardon, Michael P A Davies, Matthew Triplette, Matthew B Schabath, Angeline S Andrew, Chu Chen, Fiona Taylor, John K Field, Adonina Tardon, Sanjay S Shete, Paul Brennan, Maria Teresa Landi, James McKay, Christopher I Amos, Xihong Lin, David C Christiani, Rayjean J Hung, Geoffrey Liu, Wei Xu

Lung cancer is the leading cause of cancer mortality. To investigate genetic determinants for prognosis among patients diagnosed with early-stage non-small cell lung cancer (NSCLC), we conducted the first large-scale genome-wide association prognostic study using data from the International Lung Cancer Consortium (ILCCO) through a two-phase analysis. Phase 1 includes the discovery of genome-wide association studies analysis using a multivariable Cox PH model on 3428 NSCLC patients of European ancestry from 10 ILCCO participating studies to identify genetic variants associated with overall survival and validation analysis for genome-wide significant variants (P-value ≤5 × 10-8) using the Cancer Genome Atlas (TCGA). Phase 2 aims to identify causal variants using functional analyses of genome-wide significant and suggestive variants (P-value ≤1 × 10-5), including variant-epigenetic functional annotation (FAVOR), CHIP-seq data, variant-gene expression association, and colocalization analysis. We identified two significant variants; of those, a locus at 9q21.31 (rs117979484) was significant at the genome-wide level (P = 3.67 × 10-8) and validated in TCGA (P = 0.03). Three suggestive variants were found to have a putative epigenetic function: intronic variants rs149281784 (BCL7B gene) and rs148031766 (POM121 gene) both located at 7q11.23 and in moderate linkage disequilibrium with each other; and variant rs2471630 (SRCIN1 gene; 17q12). Specifically, variants rs149281784 and rs148031766 have potential regulatory roles in the transcriptional activation of the BCL7B gene and POM121 gene. Exploratory survival analyses in the squamous cell carcinomas subgroup also identified a significant variant, rs138467404 (GRHL-2 gene; 8q22.3) at a genome-wide level (P = 4.75 × 10-8) and validated by TCGA (P = 0.02). These new findings indicate potential novel pathways associated with early-stage NSCLC prognosis. Future research may validate additional genome-wide suggestive variants as being relevant for lung cancer outcomes.

肺癌是导致癌症死亡的主要原因。为了研究早期非小细胞肺癌(NSCLC)患者预后的遗传决定因素,我们利用国际肺癌协会(ILCCO)的数据,通过两阶段分析进行了首次大规模全基因组关联预后研究。第一阶段包括使用多变量Cox PH模型对来自10个ILCCO参与研究的3428名欧洲血统非小细胞肺癌患者进行全基因组关联研究分析,以确定与总生存相关的遗传变异,并使用癌症基因组图谱(TCGA)验证全基因组显著变异(p值≤5 × 10-8)。第二阶段旨在通过全基因组显著性和暗暗性变异(p值≤1 × 10-5)的功能分析,包括变异-表观遗传功能注释(FAVOR)、CHIP-seq数据、变异基因表达关联和共定位分析,识别因果变异。我们发现了两个显著的变异;其中,9q21.31位点(rs117979484)在全基因组水平上具有显著性(P = 3.67 × 10-8),在TCGA中得到验证(P = 0.03)。发现了3个具有推测表观遗传功能的提示变异体:位于7q11.23的内含子变异体rs149281784 (BCL7B基因)和rs148031766 (POM121基因),它们之间存在中度连锁不平衡;变异rs2471630 (SRCIN1基因);17 q12)。具体来说,rs149281784和rs148031766变体在BCL7B基因和POM121基因的转录激活中具有潜在的调节作用。探索性生存分析在鳞状细胞癌亚组中也发现了一个显著的变异,rs138467404 (GRHL-2基因;8q22.3)在全基因组水平(P = 4.75 × 10-8),并经TCGA验证(P = 0.02)。这些新发现提示了与早期非小细胞肺癌预后相关的潜在新途径。未来的研究可能会证实更多的全基因组暗示变异与肺癌结局有关。
{"title":"Genome-wide association study of early-stage non-small cell lung cancer prognosis: a pooled analysis in the International Lung Cancer Consortium.","authors":"Mei Dong, Abhinav Thakral, Karl Smith- Byrne, Yohan Bosse, Hufeng Zhou, Yi Zhang, Joshua Atkins, Philip Haycock, M Catherine Brown, Kiera Murison, Wim Timens, Don D Sin, Jui Kothari, Aurélie A G Gabriel, David Zaridze, Milan Savic, Jolanta Lissowska, Beata Świątkowska, Vladimir Janout, Ivana Holcatova, Anush Mukeria, Guillermo Fernandez-Tardon, Michael P A Davies, Matthew Triplette, Matthew B Schabath, Angeline S Andrew, Chu Chen, Fiona Taylor, John K Field, Adonina Tardon, Sanjay S Shete, Paul Brennan, Maria Teresa Landi, James McKay, Christopher I Amos, Xihong Lin, David C Christiani, Rayjean J Hung, Geoffrey Liu, Wei Xu","doi":"10.1093/carcin/bgaf031","DOIUrl":"10.1093/carcin/bgaf031","url":null,"abstract":"<p><p>Lung cancer is the leading cause of cancer mortality. To investigate genetic determinants for prognosis among patients diagnosed with early-stage non-small cell lung cancer (NSCLC), we conducted the first large-scale genome-wide association prognostic study using data from the International Lung Cancer Consortium (ILCCO) through a two-phase analysis. Phase 1 includes the discovery of genome-wide association studies analysis using a multivariable Cox PH model on 3428 NSCLC patients of European ancestry from 10 ILCCO participating studies to identify genetic variants associated with overall survival and validation analysis for genome-wide significant variants (P-value ≤5 × 10-8) using the Cancer Genome Atlas (TCGA). Phase 2 aims to identify causal variants using functional analyses of genome-wide significant and suggestive variants (P-value ≤1 × 10-5), including variant-epigenetic functional annotation (FAVOR), CHIP-seq data, variant-gene expression association, and colocalization analysis. We identified two significant variants; of those, a locus at 9q21.31 (rs117979484) was significant at the genome-wide level (P = 3.67 × 10-8) and validated in TCGA (P = 0.03). Three suggestive variants were found to have a putative epigenetic function: intronic variants rs149281784 (BCL7B gene) and rs148031766 (POM121 gene) both located at 7q11.23 and in moderate linkage disequilibrium with each other; and variant rs2471630 (SRCIN1 gene; 17q12). Specifically, variants rs149281784 and rs148031766 have potential regulatory roles in the transcriptional activation of the BCL7B gene and POM121 gene. Exploratory survival analyses in the squamous cell carcinomas subgroup also identified a significant variant, rs138467404 (GRHL-2 gene; 8q22.3) at a genome-wide level (P = 4.75 × 10-8) and validated by TCGA (P = 0.02). These new findings indicate potential novel pathways associated with early-stage NSCLC prognosis. Future research may validate additional genome-wide suggestive variants as being relevant for lung cancer outcomes.</p>","PeriodicalId":9446,"journal":{"name":"Carcinogenesis","volume":" ","pages":""},"PeriodicalIF":2.9,"publicationDate":"2025-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144759263","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LncRNA MEG3 suppresses prostate cancer progression by mediating macrophage polarization via the miR-148a-3p/ARRDC3 signaling axis. LncRNA MEG3通过miR-148a-3p/ARRDC3信号轴介导巨噬细胞极化抑制前列腺癌进展
IF 3.3 3区 医学 Q2 ONCOLOGY Pub Date : 2025-04-03 DOI: 10.1093/carcin/bgaf009
Jinguang Luo, Huaixiang Tao, Long Chen, Hao Hu, Likai Mao, Han Guan

Long-chain noncoding RNA (LncRNA) MEG3 significantly influences tumor microenvironment (TME) dynamics and macrophage polarization. However, its specific involvement in prostate cancer (PCa) progression remains unclear. MEG3 exhibited low expression in PCa, and immune infiltration analysis revealed a positive association with M1 macrophages infiltration and a negative association with M2 macrophages infiltration. Immunohistochemical analysis demonstrated increased MEG3 levels, corresponding with upregulated INOS (an M1 marker) and downregulated CD163 (an M2 marker). MEG3 expression was markedly elevated in LPS-induced M1 macrophages and notably reduced in IL-4-induced M2 macrophages. The overexpression of MEG3 significantly enhanced M1 macrophages polarization while suppressing M2 macrophages polarization. Using an online database and a dual luciferase reporter assay, miR-148a-3p was identified as a downstream target of MEG3. Reduced miR-148a-3p expression was observed in LPS-induced M1 macrophages, while an increase was noted in IL-4-induced M2 macrophages. Moreover, MEG3 overexpression's impact on macrophage polarization was nullified following miR-148a-3p mimic transfection. ARRDC3 was validated as a downstream target of miR-148a-3p. The upregulation of ARRDC3 triggered by MEG3 overexpression was effectively suppressed by miR-148a-3p mimics. Additionally, Knockdown of ARRDC3 effectively counteracted the MEG3 overexpression-induced increase in M1 macrophages polarization while simultaneously mitigating the reduction in M2 macrophages polarization. Collectively, MEG3 exhibits reduced expression in PCa and correlates with macrophage infiltration and polarization. Specifically, it drives M1 macrophages polarization while suppressing M2 macrophages polarization via the miR-148a-3p/ARRDC3 axis, thereby impeding tumor immune evasion and restricting PCa progression.

长链非编码RNA (LncRNA) MEG3显著影响肿瘤微环境(TME)动力学和巨噬细胞极化。然而,它在前列腺癌(PCa)进展中的具体作用尚不清楚。MEG3在PCa中低表达,免疫浸润分析显示其与M1巨噬细胞浸润呈正相关,与M2巨噬细胞浸润负相关。免疫组织化学分析显示MEG3水平升高,与INOS (M1标记物)上调和CD163 (M2标记物)下调相对应。在lps诱导的M1巨噬细胞中,MEG3的表达明显升高,而在il -4诱导的M2巨噬细胞中,MEG3的表达明显降低。MEG3过表达显著增强M1巨噬细胞极化,抑制M2巨噬细胞极化。通过在线数据库和双荧光素酶报告基因检测,miR-148a-3p被确定为MEG3的下游靶点。在lps诱导的M1巨噬细胞中,miR-148a-3p表达降低,而在il -4诱导的M2巨噬细胞中,miR-148a-3p表达升高。此外,转染miR-148a-3p模拟物后,MEG3过表达对巨噬细胞极化的影响被消除。ARRDC3被证实是miR-148a-3p的下游靶标。MEG3过表达引发的ARRDC3上调被miR-148a-3p模拟物有效抑制。此外,敲低ARRDC3可有效抵消MEG3过表达诱导的M1巨噬细胞极化的增加,同时减轻M2巨噬细胞极化的减少。总的来说,MEG3在PCa中表达减少,并与巨噬细胞浸润和极化相关。具体来说,它通过miR-148a-3p/ARRDC3轴驱动M1巨噬细胞极化,同时抑制M2巨噬细胞极化,从而阻碍肿瘤免疫逃避,限制PCa进展。
{"title":"LncRNA MEG3 suppresses prostate cancer progression by mediating macrophage polarization via the miR-148a-3p/ARRDC3 signaling axis.","authors":"Jinguang Luo, Huaixiang Tao, Long Chen, Hao Hu, Likai Mao, Han Guan","doi":"10.1093/carcin/bgaf009","DOIUrl":"10.1093/carcin/bgaf009","url":null,"abstract":"<p><p>Long-chain noncoding RNA (LncRNA) MEG3 significantly influences tumor microenvironment (TME) dynamics and macrophage polarization. However, its specific involvement in prostate cancer (PCa) progression remains unclear. MEG3 exhibited low expression in PCa, and immune infiltration analysis revealed a positive association with M1 macrophages infiltration and a negative association with M2 macrophages infiltration. Immunohistochemical analysis demonstrated increased MEG3 levels, corresponding with upregulated INOS (an M1 marker) and downregulated CD163 (an M2 marker). MEG3 expression was markedly elevated in LPS-induced M1 macrophages and notably reduced in IL-4-induced M2 macrophages. The overexpression of MEG3 significantly enhanced M1 macrophages polarization while suppressing M2 macrophages polarization. Using an online database and a dual luciferase reporter assay, miR-148a-3p was identified as a downstream target of MEG3. Reduced miR-148a-3p expression was observed in LPS-induced M1 macrophages, while an increase was noted in IL-4-induced M2 macrophages. Moreover, MEG3 overexpression's impact on macrophage polarization was nullified following miR-148a-3p mimic transfection. ARRDC3 was validated as a downstream target of miR-148a-3p. The upregulation of ARRDC3 triggered by MEG3 overexpression was effectively suppressed by miR-148a-3p mimics. Additionally, Knockdown of ARRDC3 effectively counteracted the MEG3 overexpression-induced increase in M1 macrophages polarization while simultaneously mitigating the reduction in M2 macrophages polarization. Collectively, MEG3 exhibits reduced expression in PCa and correlates with macrophage infiltration and polarization. Specifically, it drives M1 macrophages polarization while suppressing M2 macrophages polarization via the miR-148a-3p/ARRDC3 axis, thereby impeding tumor immune evasion and restricting PCa progression.</p>","PeriodicalId":9446,"journal":{"name":"Carcinogenesis","volume":" ","pages":""},"PeriodicalIF":3.3,"publicationDate":"2025-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Carcinogenesis
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