Pub Date : 2025-12-16DOI: 10.1016/j.canlet.2025.218210
Kegan Zhu , Haiyang Zhang , Guoli Li , Suyu Zong , Xue Han , Miaomiao Zhang , Yingchi Zhang , Ming Gao , Wenyu Yang , Zhi Yao , Zhe Liu
T-cell acute lymphoblastic leukemia (T-ALL) is a prevalent hematologic malignancy in pediatric and adolescent populations, characterized by uncontrolled proliferation of immature T lymphocytes. The development of chemoresistance represents a major clinical challenge in T-ALL treatment and alteration in DNA damage response (DDR) pathways was recognized as important mechanism underlying drug resistance. Long non-coding RNAs (lncRNAs), defined as transcripts exceeding 200 nucleotides in length, have emerged as critical regulators in various pathological processes, including oncogenesis. However, their specific roles in DDR regulation within T-ALL remain largely unexplored. In this study, through comprehensive sequencing analysis of clinical specimens, we identified that lncDDR was significantly upregulated in T-ALL patients. Functional characterization revealed that lncDDR promotes leukemogenesis by enhancing tumor cell proliferation both in vitro and in vivo. Utilizing RNA pull-down assays coupled with mass spectrometric analysis, we identified ILF2 (interleukin enhancer-binding factor 2) as a direct interacting partner of lncDDR. Given the established involvement of ILF2 in DDR processes, we subsequently investigated the functional role of lncDDR in modulating DDR pathways in T-ALL. Additionally, we systematically evaluated the impact of lncDDR on chemosensitivity in T-ALL treatment.
{"title":"lncDDR suppresses drug resistance by regulating DNA damage repair through ILF2-YB1 in T-cell acute lymphoblastic leukemia","authors":"Kegan Zhu , Haiyang Zhang , Guoli Li , Suyu Zong , Xue Han , Miaomiao Zhang , Yingchi Zhang , Ming Gao , Wenyu Yang , Zhi Yao , Zhe Liu","doi":"10.1016/j.canlet.2025.218210","DOIUrl":"10.1016/j.canlet.2025.218210","url":null,"abstract":"<div><div>T-cell acute lymphoblastic leukemia (T-ALL) is a prevalent hematologic malignancy in pediatric and adolescent populations, characterized by uncontrolled proliferation of immature T lymphocytes. The development of chemoresistance represents a major clinical challenge in T-ALL treatment and alteration in DNA damage response (DDR) pathways was recognized as important mechanism underlying drug resistance. Long non-coding RNAs (lncRNAs), defined as transcripts exceeding 200 nucleotides in length, have emerged as critical regulators in various pathological processes, including oncogenesis. However, their specific roles in DDR regulation within T-ALL remain largely unexplored. In this study, through comprehensive sequencing analysis of clinical specimens, we identified that lncDDR was significantly upregulated in T-ALL patients. Functional characterization revealed that lncDDR promotes leukemogenesis by enhancing tumor cell proliferation both <em>in vitro</em> and <em>in vivo</em>. Utilizing RNA pull-down assays coupled with mass spectrometric analysis, we identified ILF2 (interleukin enhancer-binding factor 2) as a direct interacting partner of lncDDR. Given the established involvement of ILF2 in DDR processes, we subsequently investigated the functional role of lncDDR in modulating DDR pathways in T-ALL. Additionally, we systematically evaluated the impact of lncDDR on chemosensitivity in T-ALL treatment.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218210"},"PeriodicalIF":10.1,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145779941","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-16DOI: 10.1016/j.canlet.2025.218224
Poompozhil Mathivanan , Pratima Raut , Neelanjana Gayen , Apar K. Ganti , Moorthy P. Ponnusamy , Surinder K. Batra
G-protein-coupled receptors (GPCRs) represent the largest family of membrane receptors encoded in the human genome, with diverse physiological and pathological functions. GPR15, a recently characterized member of this family, has emerged as a receptor of interest due to its significant upregulation and hypomethylation in response to cigarette smoking, a modifiable environmental risk factor implicated in numerous diseases. Initially, it was identified as a coreceptor for viruses, human immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV). It was later deorphanized with the discovery of its endogenous ligand, C10orf99. This review explores the effect of cigarette smoke on GPR15 expression, its different ligands, and the GPR15 signaling axis in various smoking-related cancers, such as lung, gastric, pancreatic, bladder, and colorectal cancers.
{"title":"A timeless chronicle: Effects of cigarette smoke on GPR15 receptor and its oncogenic potential","authors":"Poompozhil Mathivanan , Pratima Raut , Neelanjana Gayen , Apar K. Ganti , Moorthy P. Ponnusamy , Surinder K. Batra","doi":"10.1016/j.canlet.2025.218224","DOIUrl":"10.1016/j.canlet.2025.218224","url":null,"abstract":"<div><div>G-protein-coupled receptors (GPCRs) represent the largest family of membrane receptors encoded in the human genome, with diverse physiological and pathological functions. GPR15, a recently characterized member of this family, has emerged as a receptor of interest due to its significant upregulation and hypomethylation in response to cigarette smoking, a modifiable environmental risk factor implicated in numerous diseases. Initially, it was identified as a coreceptor for viruses, human immunodeficiency virus (HIV) and simian immunodeficiency virus (SIV). It was later deorphanized with the discovery of its endogenous ligand, C10orf99. This review explores the effect of cigarette smoke on GPR15 expression, its different ligands, and the GPR15 signaling axis in various smoking-related cancers, such as lung, gastric, pancreatic, bladder, and colorectal cancers.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218224"},"PeriodicalIF":10.1,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145780581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-15DOI: 10.1016/j.canlet.2025.218220
Jing Li , Jing Fu , Xin Geng , Hongyang Wang
Cancer remains a leading global burden, and the volume of multimodal oncology data—spanning digital pathology, radiology, genomics, and Electronic Health Records (EHRs)—is expanding exponentially. Foundation models (FMs), trained on broad unlabeled corpora and adapted to diverse tasks, have catalyzed advances in screening and diagnosis, outcome prediction, and inference of actionable molecular alterations, with early traction in treatment selection, drug repurposing, and clinical trial design. Yet key barriers persist: variability in tissue processing, imaging protocols, and data standards drives heterogeneity; the scarcity of well-annotated, multi-institutional cohorts limits development and independent validation; regulatory guidelines and policy making for FM-enabled diagnostics are still maturing; privacy and data sovereignty complicate data sharing; and bias against under-represented populations threatens equitable performance. A practical way forward is to combine high-quality, representative cohorts and interoperable data infrastructure with cross-institutional partnerships that embed AI talent within clinical teams—closing these gaps and enabling generalizable, trustworthy tools to reshape cancer care.
{"title":"Foundation models in clinical oncology: Progresses and perspectives","authors":"Jing Li , Jing Fu , Xin Geng , Hongyang Wang","doi":"10.1016/j.canlet.2025.218220","DOIUrl":"10.1016/j.canlet.2025.218220","url":null,"abstract":"<div><div>Cancer remains a leading global burden, and the volume of multimodal oncology data—spanning digital pathology, radiology, genomics, and Electronic Health Records (EHRs)—is expanding exponentially. Foundation models (FMs), trained on broad unlabeled corpora and adapted to diverse tasks, have catalyzed advances in screening and diagnosis, outcome prediction, and inference of actionable molecular alterations, with early traction in treatment selection, drug repurposing, and clinical trial design. Yet key barriers persist: variability in tissue processing, imaging protocols, and data standards drives heterogeneity; the scarcity of well-annotated, multi-institutional cohorts limits development and independent validation; regulatory guidelines and policy making for FM-enabled diagnostics are still maturing; privacy and data sovereignty complicate data sharing; and bias against under-represented populations threatens equitable performance. A practical way forward is to combine high-quality, representative cohorts and interoperable data infrastructure with cross-institutional partnerships that embed AI talent within clinical teams—closing these gaps and enabling generalizable, trustworthy tools to reshape cancer care.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218220"},"PeriodicalIF":10.1,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145773708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-15DOI: 10.1016/j.canlet.2025.218222
Junshu Wang , Xiaoyu Huang , Shuyi Chen , Yuanci Zhang , Ge Miao , Shuya Du , Xin Wang , Yuanyuan Lu , Xiaodi Zhao
The solute carrier (SLC) transporter family, serving as metabolic gatekeepers, transports a range of substrates (nutrients, metabolites, ions, drugs) and regulates key physiological processes (proliferation, migration, angiogenesis, chemoresistance, immunomodulation, energy metabolism). Gastrointestinal malignancies are a leading cause of cancer-related deaths globally, marked by high prevalence and aggressive growth. Metabolic reprogramming, as an emerging cancer hallmark, promotes uncontrolled tumour proliferation. It dynamically adjusts the distribution of nutrients and energy in the tumour microenvironment, thereby regulating specific cellular processes. SLC transporters are widely expressed in the gastrointestinal tract, and their dysfunction can significantly affect tumour growth. Understanding the complex crosstalk between SLCs, cancer cell metabolism, and the tumour microenvironment is crucial for developing novel therapies. This review summarises the roles of SLCs in various oncogenic behaviours of gastrointestinal tumors, explains how their expression patterns and genetic variations contribute to chemoresistance, and assesses the clinical value of targeting SLC family proteins for therapeutic purposes.
{"title":"Roles and therapeutic targeting of SLC transporters in gastrointestinal malignancies","authors":"Junshu Wang , Xiaoyu Huang , Shuyi Chen , Yuanci Zhang , Ge Miao , Shuya Du , Xin Wang , Yuanyuan Lu , Xiaodi Zhao","doi":"10.1016/j.canlet.2025.218222","DOIUrl":"10.1016/j.canlet.2025.218222","url":null,"abstract":"<div><div>The solute carrier (SLC) transporter family, serving as metabolic gatekeepers, transports a range of substrates (nutrients, metabolites, ions, drugs) and regulates key physiological processes (proliferation, migration, angiogenesis, chemoresistance, immunomodulation, energy metabolism). Gastrointestinal malignancies are a leading cause of cancer-related deaths globally, marked by high prevalence and aggressive growth. Metabolic reprogramming, as an emerging cancer hallmark, promotes uncontrolled tumour proliferation. It dynamically adjusts the distribution of nutrients and energy in the tumour microenvironment, thereby regulating specific cellular processes. SLC transporters are widely expressed in the gastrointestinal tract, and their dysfunction can significantly affect tumour growth. Understanding the complex crosstalk between SLCs, cancer cell metabolism, and the tumour microenvironment is crucial for developing novel therapies. This review summarises the roles of SLCs in various oncogenic behaviours of gastrointestinal tumors, explains how their expression patterns and genetic variations contribute to chemoresistance, and assesses the clinical value of targeting SLC family proteins for therapeutic purposes.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218222"},"PeriodicalIF":10.1,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145773296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-12DOI: 10.1016/j.canlet.2025.218219
Fei Wu , Jiannan Shen , Zhiting Zhao , Yan Chen , Binhui Ren , Ming Li , Rong Yin , Yanyan Zhang , Shaorong Yu
Non-small cell lung cancer (NSCLC) remains a leading cause of cancer-related mortality, and EGFR-mutant tumors show limited response to current immunotherapy. The immunosuppressive tumor microenvironment, particularly metabolic constraints on effector T cells, is increasingly recognized as a major barrier to effective anti-tumor responses. HHLA2, a B7 family member frequently elevated in EGFR-mutant NSCLC, has an incompletely defined role in immune escape. In this study, we demonstrate that tumor-derived HHLA2 engages the inhibitory receptor KIR3DL3 on CD8+ T cells, driving T cell exhaustion through metabolic reprogramming of amino acid utilization. HHLA2–KIR3DL3 signaling suppresses glutamine utilization through ERK/MAPK-dependent repression of SLC1A5, SLC38A2, and ADHFE1, key glutamine transporters and metabolic enzymes, thereby inducing metabolic insufficiency and dysfunctional cytokine production in CD8+ T cells, including reduced IFN-γ, TNF-α, and increased IL-10. Disruption of this axis—via HHLA2 deletion or antibody blockade—restored T cell metabolism and effector function, leading to attenuated tumor progression in humanized mouse models. Notably, HHLA2/KIR3DL3 inhibition synergized with EGFR tyrosine kinase inhibitors to enhance anti-tumor immunity and suppress tumor progression. Together, these findings identify HHLA2–KIR3DL3 as a key immunosuppressive pathway in EGFR-mutant NSCLC and may provide a rationale for therapeutic targeting to improve clinical outcomes.
{"title":"HHLA2 promotes immune evasion in EGFR-mutant lung cancer by inhibiting CD8+ T cell glutamine metabolism via KIR3DL3 interaction","authors":"Fei Wu , Jiannan Shen , Zhiting Zhao , Yan Chen , Binhui Ren , Ming Li , Rong Yin , Yanyan Zhang , Shaorong Yu","doi":"10.1016/j.canlet.2025.218219","DOIUrl":"10.1016/j.canlet.2025.218219","url":null,"abstract":"<div><div>Non-small cell lung cancer (NSCLC) remains a leading cause of cancer-related mortality, and EGFR-mutant tumors show limited response to current immunotherapy. The immunosuppressive tumor microenvironment, particularly metabolic constraints on effector T cells, is increasingly recognized as a major barrier to effective anti-tumor responses. HHLA2, a B7 family member frequently elevated in EGFR-mutant NSCLC, has an incompletely defined role in immune escape. In this study, we demonstrate that tumor-derived HHLA2 engages the inhibitory receptor KIR3DL3 on CD8<sup>+</sup> T cells, driving T cell exhaustion through metabolic reprogramming of amino acid utilization. HHLA2–KIR3DL3 signaling suppresses glutamine utilization through ERK/MAPK-dependent repression of SLC1A5, SLC38A2, and ADHFE1, key glutamine transporters and metabolic enzymes, thereby inducing metabolic insufficiency and dysfunctional cytokine production in CD8<sup>+</sup> T cells, including reduced IFN-γ, TNF-α, and increased IL-10. Disruption of this axis—via HHLA2 deletion or antibody blockade—restored T cell metabolism and effector function, leading to attenuated tumor progression in humanized mouse models. Notably, HHLA2/KIR3DL3 inhibition synergized with EGFR tyrosine kinase inhibitors to enhance anti-tumor immunity and suppress tumor progression. Together, these findings identify HHLA2–KIR3DL3 as a key immunosuppressive pathway in EGFR-mutant NSCLC and may provide a rationale for therapeutic targeting to improve clinical outcomes.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218219"},"PeriodicalIF":10.1,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145755465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-11DOI: 10.1016/j.canlet.2025.218218
Baiyang Liu , Xudong Xiang , Yan Cheng , Jimin Fei , Mengge Wu , Laihao Qu , Xian Zhao , Xing Chen , Yao Li , Jia Du , Dengcai Mu , Haoqing Zhai , Qiushuo Shen , Yongbin Chen , Cuiping Yang
Head and neck squamous cell carcinoma (HNSCC) is an epithelial carcinoma characterized by its distinct geographical distribution, exhibiting a higher prevalence in Southeast Asia. Despite the approval of immune checkpoint blockade (ICB) therapy for treating advanced recurrent HNSCC, the extent of patient benefit remains limited. Elucidating the molecular regulatory mechanisms of immunosuppressive tumor microenvironment in HNSCC is crucial for improving current treatment status and patient outcomes. Our findings show that knockdown of NCAPH suppresses cell proliferation, migration, and xenograft tumor growth, while enhancing radiotherapy-induced cellular apoptosis. Importantly, we found that NCAPH binds to PD-L1 and disrupts its degradation, competing with HIP1R (Huntingtin-interacting protein 1-related) and leading to the stabilization of PD-L1 protein, which contributes to the formation of immunosuppressive tumor microenvironment. To inhibit the interaction between NCAPH and PD-L1, we created a peptide known as NPIDP (NCAPH and PD-L1 Interaction Disrupting Peptide) that effectively disrupts the interaction between NCAPH and PD-L1. Furthermore, topotecan, a well-characterized topoisomerase I inhibitor, was identified to bind NCAPH and promote its proteasomal degradation. Notably, we demonstrated that NPIDP and topotecan suppress tumor immune evasion both in vitro and in vivo. In summary, our findings reveal the critical role of NCAPH in regulating tumor immune surveillance, suggesting that NCAPH could serve as a potential biomarker and therapeutic target for HNSCC in the future.
{"title":"NCAPH promotes immune evasion via inhibiting PD-L1 protein degradation in head and neck squamous cell carcinoma","authors":"Baiyang Liu , Xudong Xiang , Yan Cheng , Jimin Fei , Mengge Wu , Laihao Qu , Xian Zhao , Xing Chen , Yao Li , Jia Du , Dengcai Mu , Haoqing Zhai , Qiushuo Shen , Yongbin Chen , Cuiping Yang","doi":"10.1016/j.canlet.2025.218218","DOIUrl":"10.1016/j.canlet.2025.218218","url":null,"abstract":"<div><div>Head and neck squamous cell carcinoma (HNSCC) is an epithelial carcinoma characterized by its distinct geographical distribution, exhibiting a higher prevalence in Southeast Asia. Despite the approval of immune checkpoint blockade (ICB) therapy for treating advanced recurrent HNSCC, the extent of patient benefit remains limited. Elucidating the molecular regulatory mechanisms of immunosuppressive tumor microenvironment in HNSCC is crucial for improving current treatment status and patient outcomes. Our findings show that knockdown of NCAPH suppresses cell proliferation, migration, and xenograft tumor growth, while enhancing radiotherapy-induced cellular apoptosis. Importantly, we found that NCAPH binds to PD-L1 and disrupts its degradation, competing with HIP1R (Huntingtin-interacting protein 1-related) and leading to the stabilization of PD-L1 protein, which contributes to the formation of immunosuppressive tumor microenvironment. To inhibit the interaction between NCAPH and PD-L1, we created a peptide known as NPIDP (NCAPH and PD-L1 Interaction Disrupting Peptide) that effectively disrupts the interaction between NCAPH and PD-L1. Furthermore, topotecan, a well-characterized topoisomerase I inhibitor, was identified to bind NCAPH and promote its proteasomal degradation. Notably, we demonstrated that NPIDP and topotecan suppress tumor immune evasion both in vitro and in vivo. In summary, our findings reveal the critical role of NCAPH in regulating tumor immune surveillance, suggesting that NCAPH could serve as a potential biomarker and therapeutic target for HNSCC in the future.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218218"},"PeriodicalIF":10.1,"publicationDate":"2025-12-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-10DOI: 10.1016/j.canlet.2025.218191
Yuan Gao , Lee X. Li , Andrew Rowland , Christos S. Karapetis , Natalie Parent , Ganessan Kichenadasse , Ashley M. Hopkins , Michael J. Sorich
{"title":"Progressive lesion type is predictive of post-progression survival in first-line chemoimmunotherapy for Non-Small Cell Lung Cancer","authors":"Yuan Gao , Lee X. Li , Andrew Rowland , Christos S. Karapetis , Natalie Parent , Ganessan Kichenadasse , Ashley M. Hopkins , Michael J. Sorich","doi":"10.1016/j.canlet.2025.218191","DOIUrl":"10.1016/j.canlet.2025.218191","url":null,"abstract":"","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218191"},"PeriodicalIF":10.1,"publicationDate":"2025-12-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-09DOI: 10.1016/j.canlet.2025.218214
Seunghyun Kang , Donghyeok Seol , Jieun Lee , Chanmi Bang , Mira Yoo , Soyeon Kim , Sepil An , Hyeongjin Cho , Duyeong Hwang , So Hyun Kang , Young Suk Park , Sang-Hoon Ahn , Hyung-Ho Kim , Eunhee Yi , Sanghyun Kim , Yun-Suhk Suh , Hoon Kim
Gastric cancer (GC) is characterized by marked molecular heterogeneity that contributes to differential patient outcomes. Focal amplification in form of extrachromosomal DNA (ecDNA) is common in multiple cancer types and is associated with poor patient outcomes, but its prevalence and clinical implications in GC remain largely unclear. In this study, we analyzed whole genome and whole transcriptome sequencing from 76 GC patients collected at a single hospital (Seoul National University Bundang Hospital) in Korea. EcDNAs were detected in 22.4 % (n = 17) of GC patients. Notably, 75.0 % (n = 12) of the patients in the ‘chromosomal instability (CIN)’ category carried ecDNAs which frequently co-occurred with chromothripsis. We found that ecDNAs were enriched for known cancer genes, and the presence of ecDNAs was associated with poor patient prognosis. Among the CIN cases, patients carrying ecDNAs showed gene expression patterns related to chromosomal instability, as also observed in patients having only non-ecDNA chromosomal amplicons (ChAmp) but exhibited more pronounced immune suppression. Our findings show that ecDNAs display distinct molecular characteristics in GC, including the high prevalence of cancer genes and pronounced characteristic of immune suppression, alongside clinical implications, suggesting that ecDNA is a key molecular factor in the clinical management of GC patients, particularly for the CIN subtype patients.
{"title":"Extrachromosomal DNA amplifications exhibit distinct molecular characteristics and prognostic implications in gastric cancer","authors":"Seunghyun Kang , Donghyeok Seol , Jieun Lee , Chanmi Bang , Mira Yoo , Soyeon Kim , Sepil An , Hyeongjin Cho , Duyeong Hwang , So Hyun Kang , Young Suk Park , Sang-Hoon Ahn , Hyung-Ho Kim , Eunhee Yi , Sanghyun Kim , Yun-Suhk Suh , Hoon Kim","doi":"10.1016/j.canlet.2025.218214","DOIUrl":"10.1016/j.canlet.2025.218214","url":null,"abstract":"<div><div>Gastric cancer (GC) is characterized by marked molecular heterogeneity that contributes to differential patient outcomes. Focal amplification in form of extrachromosomal DNA (ecDNA) is common in multiple cancer types and is associated with poor patient outcomes, but its prevalence and clinical implications in GC remain largely unclear. In this study, we analyzed whole genome and whole transcriptome sequencing from 76 GC patients collected at a single hospital (Seoul National University Bundang Hospital) in Korea. EcDNAs were detected in 22.4 % (n = 17) of GC patients. Notably, 75.0 % (n = 12) of the patients in the ‘chromosomal instability (CIN)’ category carried ecDNAs which frequently co-occurred with chromothripsis. We found that ecDNAs were enriched for known cancer genes, and the presence of ecDNAs was associated with poor patient prognosis. Among the CIN cases, patients carrying ecDNAs showed gene expression patterns related to chromosomal instability, as also observed in patients having only non-ecDNA chromosomal amplicons (ChAmp) but exhibited more pronounced immune suppression. Our findings show that ecDNAs display distinct molecular characteristics in GC, including the high prevalence of cancer genes and pronounced characteristic of immune suppression, alongside clinical implications, suggesting that ecDNA is a key molecular factor in the clinical management of GC patients, particularly for the CIN subtype patients.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218214"},"PeriodicalIF":10.1,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-09DOI: 10.1016/j.canlet.2025.218204
Yupeng Guan , Fei Cao , Yusheng Luo , Jun Li , Peng Wu , Junfu Zhang , Wenhan Qiu , Shaohong Lai , Hanqi Lei , Jun Pang
High-fat diet (HFD) and obesity are established risk factors for therqpy resistance in prostate cancer (PCa), but the underlying mechanisms remain incompletely understood. Here, we demonstrate that a HFD promote chemoresistance by remodeling the tumor microenvironment (TME) and activating extracellular matrix (ECM)-dependent mitochondria-endoplasmic reticulum contacts (MERCs). Through integration of clinical data with multi-omics and biomechanical analyses, we show that lipid-overloaded tumor cells secrete TGF-β1 to indirectly drive the activation of cancer-associated fibroblasts (CAFs). This triggers pathological ECM stiffening and collagen deposition. These biomechanical alterations are sensed by the mechanosensor Piezo1, which transduces pro-malignant signals that foster chemoresistance. Pharmacological inhibition of Piezo1 blocks its channel activity, disrupts intracellular ion homeostasis and consequently induces MERCs dissociation. MERCs disassembly, in return, destabilizes the IP3R-GRP75-VDAC complex, leading to metabolic reprogramming characterized by mitochondrial dysfunction, endoplasmic reticulum stress, and redox imbalance. Crucially, dual targeting of lipid metabolism (with statins) and mechanotransduction (with GsMTx4) resensitizes PCa to chemotherapy by normalizing ECM architecture and restoring MERCs integrity. Our work defines the "mechanometabolic niche" as a targetable signaling hub where coordinated lipid metabolism and TME biomechanics converge to dictate therapeutic response and unveils a novel co-targeting strategy for advanced PCa.
{"title":"High-fat diet induced ECM remodeling attenuates chemosensitivity in prostate cancer via activating Piezo1-dependent mitochondria-ER contacts","authors":"Yupeng Guan , Fei Cao , Yusheng Luo , Jun Li , Peng Wu , Junfu Zhang , Wenhan Qiu , Shaohong Lai , Hanqi Lei , Jun Pang","doi":"10.1016/j.canlet.2025.218204","DOIUrl":"10.1016/j.canlet.2025.218204","url":null,"abstract":"<div><div>High-fat diet (HFD) and obesity are established risk factors for therqpy resistance in prostate cancer (PCa), but the underlying mechanisms remain incompletely understood. Here, we demonstrate that a HFD promote chemoresistance by remodeling the tumor microenvironment (TME) and activating extracellular matrix (ECM)-dependent mitochondria-endoplasmic reticulum contacts (MERCs). Through integration of clinical data with multi-omics and biomechanical analyses, we show that lipid-overloaded tumor cells secrete TGF-β1 to indirectly drive the activation of cancer-associated fibroblasts (CAFs). This triggers pathological ECM stiffening and collagen deposition. These biomechanical alterations are sensed by the mechanosensor Piezo1, which transduces pro-malignant signals that foster chemoresistance. Pharmacological inhibition of Piezo1 blocks its channel activity, disrupts intracellular ion homeostasis and consequently induces MERCs dissociation. MERCs disassembly, in return, destabilizes the IP3R-GRP75-VDAC complex, leading to metabolic reprogramming characterized by mitochondrial dysfunction, endoplasmic reticulum stress, and redox imbalance. Crucially, dual targeting of lipid metabolism (with statins) and mechanotransduction (with GsMTx4) resensitizes PCa to chemotherapy by normalizing ECM architecture and restoring MERCs integrity. Our work defines the \"mechanometabolic niche\" as a targetable signaling hub where coordinated lipid metabolism and TME biomechanics converge to dictate therapeutic response and unveils a novel co-targeting strategy for advanced PCa.</div></div>","PeriodicalId":9506,"journal":{"name":"Cancer letters","volume":"639 ","pages":"Article 218204"},"PeriodicalIF":10.1,"publicationDate":"2025-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145741171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}