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Standard: Human intestinal organoids. 标准:人类肠道类器官。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-14 DOI: 10.1186/s13619-023-00168-5
Yalong Wang, Hanqing Lin, Lianzheng Zhao, Fan Hong, Jie Hao, Zhen Zhang, Weiqi Sheng, Linhong Song, Chu-Xia Deng, Bing Zhao, Jiani Cao, Lei Wang, Liu Wang, Lingmin Liang, Wenli Kelly Chen, Chunping Yu, Zhijian Sun, Yingying Yang, Changlin Wang, Yong Zhang, Qiyuan Li, Ka Li, Aijin Ma, Tongbiao Zhao, Guoqiang Hua, Ye-Guang Chen

Organoids have attracted great interest for disease modelling, drug discovery and development, and tissue growth and homeostasis investigations. However, lack of standards for quality control has become a prominent obstacle to limit their translation into clinic and other applications. "Human intestinal organoids" is the first guideline on human intestinal organoids in China, jointly drafted and agreed by the experts from the Chinese Society for Cell Biology and its branch society: the Chinese Society for Stem Cell Research. This standard specifies terms and definitions, technical requirements, test methods, inspection rules for human intestinal organoids, which is applicable to quality control during the process of manufacturing and testing of human intestinal organoids. It was originally released by the Chinese Society for Cell Biology on 24 September 2022. We hope that the publication of this standard will guide institutional establishment, acceptance and execution of proper practical protocols and accelerate the international standardization of human intestinal organoids for applications.

类器官在疾病建模、药物发现和开发、组织生长和体内平衡研究中引起了极大的兴趣。然而,缺乏质量控制标准已成为限制其转化为临床和其他应用的一个突出障碍。《人类肠道类器官》是中国首部关于人类肠道类器官的指南,由中国细胞生物学学会及其分支学会——中国干细胞研究学会的专家共同起草并通过。本标准规定了人体肠道类器官的术语和定义、技术要求、试验方法、检验规则,适用于人体肠道类器官生产和检测过程中的质量控制。它最初是由中国细胞生物学学会于2022年9月24日发布的。我们希望本标准的发布能够指导机构建立、接受和执行适当的实用方案,加快人类肠道类器官应用的国际标准化进程。
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引用次数: 0
PHDs-seq: a large-scale phenotypic screening method for drug discovery through parallel multi-readout quantification. phd -seq:一种通过平行多读数定量的药物发现的大规模表型筛选方法。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-02 DOI: 10.1186/s13619-023-00164-9
Jun Li, Jun Chi, Yang Yang, Zhongya Song, Yong Yang, Xin Zhou, Yang Liu, Yang Zhao

High-throughput phenotypic screening is a cornerstone of drug development and the main technical approach for stem cell research. However, simultaneous detection of activated core factors responsible for cell fate determination and accurate assessment of directional cell transition are difficult using conventional screening methods that focus on changes in only a few biomarkers. The PHDs-seq (Probe Hybridization based Drug screening by sequencing) platform was developed to evaluate compound function based on their transcriptional effects in a wide range of signature biomarkers. In this proof-of-concept demonstration, several sets of markers related to cell fate determination were profiled in adipocyte reprogramming from dermal fibroblasts. After validating the accuracy, sensitivity and reproducibility of PHDs-seq data in molecular and cellular assays, a panel of 128 signalling-related compounds was screened for the ability to induce reprogramming of keloid fibroblasts (KF) into adipocytes. Notably, the potent ATP-competitive VEGFR/PDGFR inhibitor compound, ABT869, was found to promote the transition from fibroblasts to adipocytes. This study highlights the power and accuracy of the PHDs-seq platform for high-throughput drug screening in stem cell research, and supports its use in basic explorations of the molecular mechanisms underlying disease development.

高通量表型筛选是药物开发的基础,也是干细胞研究的主要技术手段。然而,使用传统的筛选方法,仅关注少数生物标志物的变化,很难同时检测负责细胞命运决定的活化核心因子和准确评估定向细胞转移。开发了PHDs-seq(基于探针杂交的药物筛选测序)平台,基于它们在广泛的标志性生物标志物中的转录效应来评估化合物的功能。在这个概念验证演示中,与细胞命运决定相关的几组标记在真皮成纤维细胞的脂肪细胞重编程中被描述。在分子和细胞分析中验证了phd -seq数据的准确性、敏感性和可重复性之后,研究人员筛选了128种信号相关化合物,以确定其诱导瘢痕疙瘩成纤维细胞(KF)重编程为脂肪细胞的能力。值得注意的是,有效的atp竞争VEGFR/PDGFR抑制剂化合物ABT869被发现可以促进成纤维细胞向脂肪细胞的转变。本研究强调了phd -seq平台在干细胞研究中高通量药物筛选的能力和准确性,并支持其在疾病发展分子机制基础探索中的应用。
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引用次数: 0
Regulation of chromatin organization during animal regeneration. 动物再生过程中染色质组织的调控。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-06-01 DOI: 10.1186/s13619-023-00162-x
Xiaohui Jia, Weifeng Lin, Wei Wang

Activation of regeneration upon tissue damages requires the activation of many developmental genes responsible for cell proliferation, migration, differentiation, and tissue patterning. Ample evidence revealed that the regulation of chromatin organization functions as a crucial mechanism for establishing and maintaining cellular identity through precise control of gene transcription. The alteration of chromatin organization can lead to changes in chromatin accessibility and/or enhancer-promoter interactions. Like embryogenesis, each stage of tissue regeneration is accompanied by dynamic changes of chromatin organization in regeneration-responsive cells. In the past decade, many studies have been conducted to investigate the contribution of chromatin organization during regeneration in various tissues, organs, and organisms. A collection of chromatin regulators were demonstrated to play critical roles in regeneration. In this review, we will summarize the progress in the understanding of chromatin organization during regeneration in different research organisms and discuss potential common mechanisms responsible for the activation of regeneration response program.

组织损伤后再生的激活需要激活许多负责细胞增殖、迁移、分化和组织模式的发育基因。大量证据表明,染色质组织的调控是通过精确控制基因转录来建立和维持细胞身份的重要机制。染色质组织的改变可导致染色质可及性和/或增强子-启动子相互作用的改变。与胚胎发生一样,组织再生的每个阶段都伴随着再生反应细胞中染色质组织的动态变化。在过去的十年中,人们进行了许多研究来探讨染色质组织在各种组织、器官和生物体的再生过程中的作用。一系列染色质调节因子被证明在再生中起关键作用。在这篇综述中,我们将总结对不同研究生物再生过程中染色质组织的理解进展,并讨论再生响应程序激活的潜在共同机制。
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引用次数: 2
Correction: Characteristic and fate determination of adipose precursors during adipose tissue remodeling. 修正:脂肪组织重塑过程中脂肪前体的特征和命运决定。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-16 DOI: 10.1186/s13619-023-00166-7
Jiayin Ye, Cheng Gao, Yong Liang, Zongliu Hou, Yufang Shi, Ying Wang
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引用次数: 0
Emerging roles of mitochondria in animal regeneration. 线粒体在动物再生中的新作用。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-05 DOI: 10.1186/s13619-023-00158-7
Yun Zhao, Chong Gao, Xue Pan, Kai Lei

The regeneration capacity after an injury is critical to the survival of living organisms. In animals, regeneration ability can be classified into five primary types: cellular, tissue, organ, structure, and whole-body regeneration. Multiple organelles and signaling pathways are involved in the processes of initiation, progression, and completion of regeneration. Mitochondria, as intracellular signaling platforms of pleiotropic functions in animals, have recently gained attention in animal regeneration. However, most studies to date have focused on cellular and tissue regeneration. A mechanistic understanding of the mitochondrial role in large-scale regeneration is unclear. Here, we reviewed findings related to mitochondrial involvement in animal regeneration. We outlined the evidence of mitochondrial dynamics across different animal models. Moreover, we emphasized the impact of defects and perturbation in mitochondria resulting in regeneration failure. Ultimately, we discussed the regulation of aging by mitochondria in animal regeneration and recommended this for future study. We hope this review will serve as a means to advocate for more mechanistic studies of mitochondria related to animal regeneration on different scales.

损伤后的再生能力对生物的生存至关重要。在动物中,再生能力可分为五种主要类型:细胞再生、组织再生、器官再生、结构再生和全身再生。多种细胞器和信号通路参与了再生的开始、进展和完成过程。线粒体作为具有多种功能的细胞内信号平台,近年来在动物再生研究中受到越来越多的关注。然而,迄今为止,大多数研究都集中在细胞和组织再生上。线粒体在大规模再生中的作用机制尚不清楚。在这里,我们回顾了与线粒体参与动物再生有关的发现。我们概述了线粒体动力学在不同动物模型中的证据。此外,我们强调了线粒体缺陷和扰动导致再生失败的影响。最后,我们讨论了线粒体在动物再生中的衰老调节作用,并推荐了未来的研究。我们希望这篇综述能够作为一种手段,倡导在不同尺度上对线粒体与动物再生相关的机制进行更多的研究。
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引用次数: 1
Characteristic and fate determination of adipose precursors during adipose tissue remodeling. 脂肪组织重塑过程中脂肪前体的特征及命运决定。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-05-04 DOI: 10.1186/s13619-023-00157-8
Jiayin Ye, Cheng Gao, Yong Liang, Zongliu Hou, Yufang Shi, Ying Wang

Adipose tissues are essential for actively regulating systemic energy balance, glucose homeostasis, immune responses, reproduction, and longevity. Adipocytes maintain dynamic metabolic needs and possess heterogeneity in energy storage and supply. Overexpansion of adipose tissue, especially the visceral type, is a high risk for diabetes and other metabolic diseases. Changes in adipocytes, hypertrophy or hyperplasia, contribute to the remodeling of obese adipose tissues, accompanied by abundant immune cell accumulation, decreased angiogenesis, and aberrant extracellular matrix deposition. The process and mechanism of adipogenesis are well known, however, adipose precursors and their fate decision are only being defined with recent information available to decipher how adipose tissues generate, maintain, and remodel. Here, we discuss the key findings that identify adipose precursors phenotypically, with special emphasis on the intrinsic and extrinsic signals in instructing and regulating the fate of adipose precursors under pathophysiological conditions. We hope that the information in this review lead to novel therapeutic strategies to combat obesity and related metabolic diseases.

脂肪组织对积极调节全身能量平衡、葡萄糖稳态、免疫反应、生殖和长寿至关重要。脂肪细胞维持着动态的代谢需求,并具有能量储存和供应的异质性。脂肪组织的过度扩张,尤其是内脏型,是糖尿病和其他代谢疾病的高风险因素。脂肪细胞的改变,肥大或增生,有助于肥胖脂肪组织的重塑,伴随着大量的免疫细胞积累,血管生成减少,和异常的细胞外基质沉积。脂肪形成的过程和机制是众所周知的,然而,脂肪前体及其命运的决定只有在最近的信息中才能被定义,以解释脂肪组织如何产生、维持和重塑。在这里,我们讨论了识别脂肪前体表型的关键发现,特别强调在病理生理条件下指导和调节脂肪前体命运的内在和外在信号。我们希望这篇综述中的信息能带来新的治疗策略,以对抗肥胖和相关的代谢疾病。
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引用次数: 2
Long-term expansion of human hematopoietic stem cells. 人类造血干细胞的长期扩增。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-19 DOI: 10.1186/s13619-023-00163-w
Guixian Liang, Feng Liu

Hematopoietic stem cells (HSCs) are critical for the treatment of a variety of hematological diseases. However, the low number of HSCs lead to the clinical application difficult. To gain more functional human HSCs ex vivo, Sakurai et al. established a recombinant-cytokine-free and albumin-free culture system, i.e. PCL-PVAc-PEG-based culture, in combination with 740Y-P, butyzamide and UM171, to improve the long-term expansion of human cord blood HSCs.

造血干细胞(hsc)是治疗多种血液系统疾病的关键。然而,造血干细胞数量少,导致临床应用困难。为了在体外获得更多功能的人造血干细胞,Sakurai等人建立了一种无重组细胞因子和无白蛋白的培养体系,即基于pcl - pvac - peg的培养体系,与740Y-P、丁酰胺和UM171联合培养,以提高人脐带血造血干细胞的长期扩增能力。
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引用次数: 0
Lung development and regeneration: newly defined cell types and progenitor status. 肺发育和再生:新定义的细胞类型和祖细胞状态。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-03 DOI: 10.1186/s13619-022-00149-0
Xiaogao Meng, Guizhong Cui, Guangdun Peng

The lung is the most critical organ of the respiratory system supporting gas exchange. Constant interaction with the external environment makes the lung vulnerable to injury. Thus, a deeper understanding of cellular and molecular processes underlying lung development programs and evaluation of progenitor status within the lung is an essential part of lung regenerative medicine. In this review, we aim to discuss the current understanding of lung development process and regenerative capability. We highlight the advances brought by multi-omics approaches, single-cell transcriptome, in particular, that can help us further dissect the cellular player and molecular signaling underlying those processes.

肺是支持气体交换的呼吸系统中最重要的器官。与外部环境的持续相互作用使肺部容易受到伤害。因此,更深入地了解肺发育程序的细胞和分子过程以及评估肺内祖细胞状态是肺再生医学的重要组成部分。在这篇综述中,我们旨在讨论目前对肺发育过程和再生能力的理解。我们强调了多组学方法带来的进步,特别是单细胞转录组,它可以帮助我们进一步剖析这些过程背后的细胞参与者和分子信号。
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引用次数: 2
Human liver organoid: modeling liver steatosis and beyond. 人肝类器官:模拟肝脂肪变性及其他。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-03 DOI: 10.1186/s13619-023-00161-y
Jinsong Wei, Wen Zhang, Bing Zhao

Steatosis, as the early stage of nonalcoholic fatty acid disease (NAFLD), would progress into nonalcoholic steatohepatitis (NASH) and liver failure without intervention. Despite the development of animal models, there is still a lack of the human-relevant platform for steatosis modeling and drug & target discovery. Hendriks et al., reporting in Nature Biotechnology, leveraged human fetal liver organoids to recapitulate steatosis by introducing nutritional and genetic triggers. Using these engineered liver organoid-derived steatosis models, they screened drugs that alleviate steatosis, and mined common mechanism of effective compounds. Further, inspired by the results of drug screening, the arrayed CRISPR-LOF screening targeting 35 lipid metabolism genes was performed, and FADS2 was identified as a critical regulator of steatosis.

脂肪变性作为非酒精性脂肪酸病(NAFLD)的早期阶段,如果不进行干预,会发展为非酒精性脂肪性肝炎(NASH)和肝功能衰竭。尽管动物模型的发展,但仍然缺乏与人类相关的脂肪变性建模和药物和靶点发现平台。Hendriks等人在《自然生物技术》杂志上报道,利用人类胎儿肝类器官通过引入营养和基因触发因素来重现脂肪变性。利用这些工程肝类器官衍生的脂肪变性模型,他们筛选了减轻脂肪变性的药物,并挖掘了有效化合物的共同机制。进一步,受药物筛选结果的启发,对35个脂质代谢基因进行了阵列CRISPR-LOF筛选,FADS2被确定为脂肪变性的关键调节因子。
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引用次数: 1
Molecular mechanisms of neurite regeneration and repair: insights from C. elegans and Drosophila. 神经突再生和修复的分子机制:来自秀丽隐杆线虫和果蝇的见解。
Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-04-02 DOI: 10.1186/s13619-022-00155-2
Xiaofan Liu, Yuqing Zhao, Wei Zou

The difficulties of injured and degenerated neurons to regenerate neurites and regain functions are more significant than in other body tissues, making neurodegenerative and related diseases hard to cure. Uncovering the secrets of neural regeneration and how this process may be inhibited after injury will provide insights into novel management and potential treatments for these diseases. Caenorhabditis elegans and Drosophila melanogaster are two of the most widely used and well-established model organisms endowed with advantages in genetic manipulation and live imaging to explore this fundamental question about neural regeneration. Here, we review the classical models and techniques, and the involvement and cooperation of subcellular structures during neurite regeneration using these two organisms. Finally, we list several important open questions that we look forward to inspiring future research.

损伤和退化的神经元再生神经突和恢复功能的困难比其他身体组织更大,使得神经退行性疾病和相关疾病难以治愈。揭示神经再生的秘密以及损伤后这一过程如何被抑制,将为这些疾病的新管理和潜在治疗提供见解。秀丽隐杆线虫(Caenorhabditis elegans)和黑腹果蝇(Drosophila melanogaster)是两种应用最广泛、建立最完善的模式生物,它们在基因操作和实时成像方面具有优势,可以探索神经再生的基本问题。在这里,我们回顾了经典的模型和技术,以及亚细胞结构在这两种生物的神经突再生过程中的参与和合作。最后,我们列出了几个重要的开放性问题,我们期待着启发未来的研究。
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引用次数: 0
期刊
Cell Regeneration
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