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Energetic and Electronic Properties of AcX and LaX (X = O and F).
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-28 DOI: 10.1021/acs.jpca.4c08358
João G F Romeu, David A Dixon

The bonding and spectroscopic properties of LaX and AcX (X = O and F) diatomic molecules were studied by high-level ab initio CCSD(T) and SO-CASPT2 electronic structure calculations. Bond dissociation energies (BDEs) were calculated at the Feller-Peterson-Dixon (FPD) level. Potential energy curves and spectroscopic constants for the lowest-lying spin-orbit Ω states were obtained at the SO-CASPT2/aQ-DK level. A dense manifold of excited states was described for the monofluorides with the ground states well separated from the excited states. The spectroscopic parameters were in good agreement with those reported experimentally for LaO and LaF. For the diatomic molecules containing actinides, no experimental data of these parameters was found, but the results were consistent with other high-level calculations. The BDEs calculated at the FPD level were 791.3 (LaO), 705.2 (AcO), 650.0 (LaF), and 678.6 (AcF) kJ/mol. The NBO analysis showed that the monofluorides are essentially ionic, which explains why the BDE(AcF) is higher than BDE(LaF); for the monoxides, covalent contributions involving the d orbitals of the metal and the p orbitals of the oxygen are stronger for LaO than AcO, which explains the higher BDE for LaO. The bond orders are predicted to be 2 for LaF and AcF, 3 for AcO, and higher than 3 for LaO.

{"title":"Energetic and Electronic Properties of AcX and LaX (X = O and F).","authors":"João G F Romeu, David A Dixon","doi":"10.1021/acs.jpca.4c08358","DOIUrl":"10.1021/acs.jpca.4c08358","url":null,"abstract":"<p><p>The bonding and spectroscopic properties of LaX and AcX (X = O and F) diatomic molecules were studied by high-level ab initio CCSD(T) and SO-CASPT2 electronic structure calculations. Bond dissociation energies (BDEs) were calculated at the Feller-Peterson-Dixon (FPD) level. Potential energy curves and spectroscopic constants for the lowest-lying spin-orbit Ω states were obtained at the SO-CASPT2/aQ-DK level. A dense manifold of excited states was described for the monofluorides with the ground states well separated from the excited states. The spectroscopic parameters were in good agreement with those reported experimentally for LaO and LaF. For the diatomic molecules containing actinides, no experimental data of these parameters was found, but the results were consistent with other high-level calculations. The BDEs calculated at the FPD level were 791.3 (LaO), 705.2 (AcO), 650.0 (LaF), and 678.6 (AcF) kJ/mol. The NBO analysis showed that the monofluorides are essentially ionic, which explains why the BDE(AcF) is higher than BDE(LaF); for the monoxides, covalent contributions involving the d orbitals of the metal and the p orbitals of the oxygen are stronger for LaO than AcO, which explains the higher BDE for LaO. The bond orders are predicted to be 2 for LaF and AcF, 3 for AcO, and higher than 3 for LaO.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"1396-1410"},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143057494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Computational Study on the Dynamics of a Bis(benzoxazole)-Based Overcrowded Alkene.
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-23 DOI: 10.1021/acs.jpca.4c06773
Charlotte N Stindt, Taegeun Jo, Jorn D Steen, Ben L Feringa, Stefano Crespi

Understanding and controlling molecular motions is of pivotal importance for designing molecular machinery and functional molecular systems, capable of performing complex tasks. Herein, we report a comprehensive theoretical study to elucidate the dynamic behavior of a bis(benzoxazole)-based overcrowded alkene displaying several coupled and uncoupled molecular motions. The benzoxazole moieties give rise to 4 different stable conformers that interconvert through single-bond rotations. By performing excited- and ground-state molecular dynamics simulations, DFT calculations, and NMR studies, we found that the photochemical E-Z isomerization of the central double bond of each stable conformer is directional and leads to a mixture of metastable isomers. This transformation is analogous to the classical Feringa-type molecular motors, with the notable difference that, during the photochemical isomerization and the subsequent thermal helix inversion (THI) steps, multiple possible pathways take place that involve single-bond rotations that can be both coupled and uncoupled to the rotation of the naphthyl half of the molecule.

{"title":"Computational Study on the Dynamics of a Bis(benzoxazole)-Based Overcrowded Alkene.","authors":"Charlotte N Stindt, Taegeun Jo, Jorn D Steen, Ben L Feringa, Stefano Crespi","doi":"10.1021/acs.jpca.4c06773","DOIUrl":"10.1021/acs.jpca.4c06773","url":null,"abstract":"<p><p>Understanding and controlling molecular motions is of pivotal importance for designing molecular machinery and functional molecular systems, capable of performing complex tasks. Herein, we report a comprehensive theoretical study to elucidate the dynamic behavior of a bis(benzoxazole)-based overcrowded alkene displaying several coupled and uncoupled molecular motions. The benzoxazole moieties give rise to 4 different stable conformers that interconvert through single-bond rotations. By performing excited- and ground-state molecular dynamics simulations, DFT calculations, and NMR studies, we found that the photochemical <i>E-Z</i> isomerization of the central double bond of each stable conformer is directional and leads to a mixture of metastable isomers. This transformation is analogous to the classical Feringa-type molecular motors, with the notable difference that, during the photochemical isomerization and the subsequent thermal helix inversion (THI) steps, multiple possible pathways take place that involve single-bond rotations that can be both coupled and uncoupled to the rotation of the naphthyl half of the molecule.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"1301-1309"},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027473","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New Infrared Spectra of the Water-CO2 Complex: Determination of Four Intermolecular Modes and Test of a High-Level Potential Energy Surface.
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-26 DOI: 10.1021/acs.jpca.4c08503
A J Barclay, A R W McKellar, C Lauzin, N Moazzen-Ahmadi

High resolution infrared spectra of water-CO2 dimers are further studied using tunable infrared sources to probe a pulsed slit jet supersonic expansion. The relatively weak transition of D2O-CO2 in the D2O ν1 fundamental region (≈2760 cm-1) is observed for the first time, as are various spectra of D2O-13CO2. Combination bands involving the intermolecular in plane geared bend (disrotatory) mode are observed for H2O-CO2 (≈1642, 2397 cm-1) in the H2O ν2 and CO2 ν3 regions, for HDO-CO2 (≈2761 cm-1) in the HDO ν3 region, and for D2O-CO2 (≈2386, 2705 and 2821 cm-1) in the CO2 ν3, D2O ν1, and D2O ν3 regions. A combination band involving the intermolecular in plane antigeared bend (conrotatory) mode is observed for D2O-13CO2 (≈2425 cm-1) in the CO2 ν3 region. And finally, a combination band involving the intermolecular twist (internal rotation) mode is observed for D2O-CO2 (≈2874 cm-1) in the D2O ν3 region. But this twist transition actually appears as two bands of similar intensity, separated by 2 cm-1, suggesting an "accidental" near-coincidence of the "real" combination state with a "dark" background state of the same symmetry. Intermolecular mode frequencies determined from the combination bands are in very good agreement with a recent theoretical calculation based on a high-level ab initio potential surface.

{"title":"New Infrared Spectra of the Water-CO<sub>2</sub> Complex: Determination of Four Intermolecular Modes and Test of a High-Level Potential Energy Surface.","authors":"A J Barclay, A R W McKellar, C Lauzin, N Moazzen-Ahmadi","doi":"10.1021/acs.jpca.4c08503","DOIUrl":"10.1021/acs.jpca.4c08503","url":null,"abstract":"<p><p>High resolution infrared spectra of water-CO<sub>2</sub> dimers are further studied using tunable infrared sources to probe a pulsed slit jet supersonic expansion. The relatively weak transition of D<sub>2</sub>O-CO<sub>2</sub> in the D<sub>2</sub>O ν<sub>1</sub> fundamental region (≈2760 cm<sup>-1</sup>) is observed for the first time, as are various spectra of D<sub>2</sub>O-<sup>13</sup>CO<sub>2</sub>. Combination bands involving the intermolecular in plane geared bend (disrotatory) mode are observed for H<sub>2</sub>O-CO<sub>2</sub> (≈1642, 2397 cm<sup>-1</sup>) in the H<sub>2</sub>O ν<sub>2</sub> and CO<sub>2</sub> ν<sub>3</sub> regions, for HDO-CO<sub>2</sub> (≈2761 cm<sup>-1</sup>) in the HDO ν<sub>3</sub> region, and for D<sub>2</sub>O-CO<sub>2</sub> (≈2386, 2705 and 2821 cm<sup>-1</sup>) in the CO<sub>2</sub> ν<sub>3</sub>, D<sub>2</sub>O ν<sub>1</sub>, and D<sub>2</sub>O ν<sub>3</sub> regions. A combination band involving the intermolecular in plane antigeared bend (conrotatory) mode is observed for D<sub>2</sub>O-<sup>13</sup>CO<sub>2</sub> (≈2425 cm<sup>-1</sup>) in the CO<sub>2</sub> ν<sub>3</sub> region. And finally, a combination band involving the intermolecular twist (internal rotation) mode is observed for D<sub>2</sub>O-CO<sub>2</sub> (≈2874 cm<sup>-1</sup>) in the D<sub>2</sub>O ν<sub>3</sub> region. But this twist transition actually appears as two bands of similar intensity, separated by 2 cm<sup>-1</sup>, suggesting an \"accidental\" near-coincidence of the \"real\" combination state with a \"dark\" background state of the same symmetry. Intermolecular mode frequencies determined from the combination bands are in very good agreement with a recent theoretical calculation based on a high-level ab initio potential surface.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"1411-1419"},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143044910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bioaerosol Characterization with Vibrational Spectroscopy: Overcoming Fluorescence with Photothermal Infrared (PTIR) Spectroscopy.
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-28 DOI: 10.1021/acs.jpca.4c07848
Jia H Shi, Carlie J Poworoznek, Rebecca L Parham, Katherine R Kolozsvari, Nicole E Olson, Yao Xiao, Ziying Lei, Johnna A Birbeck, Stephen J Jacquemin, Judy A Westrick, Andrew P Ault

Aerosols containing biological material (i.e., bioaerosols) impact public health by transporting toxins, allergens, and diseases and impact the climate by nucleating ice crystals and cloud droplets. Single particle characterization of primary biological aerosol particles (PBAPs) is essential, as individual particle physicochemical properties determine their impacts. Vibrational spectroscopies, such as infrared (IR) or Raman spectroscopy, provide detailed information about the biological components within atmospheric aerosols but these techniques have traditionally been limited due to the diffraction limit of IR radiation (particles >10 μm) and fluorescence of bioaerosol components overwhelming the Raman signal. Herein, we use photothermal infrared spectroscopy (PTIR) to overcome these limitations and characterize individual PBAPs down to 0.18 μm. Both optical-PTIR (O-PTIR) and atomic force microscopy-PTIR (AFM-PTIR) were used to characterize bioaerosol particles generated from a cyanobacterial harmful algal bloom (cHAB) dominated by Planktothrix agardhii. PTIR spectra contained modes consistent with traditional Fourier transform infrared (FTIR) spectra for biological species, including amide I (1630-1700 cm-1) and amide II (1530-1560 cm-1). The fractions of particles containing biological materials were greater in supermicron particles (1.8-3.2 μm) than in submicron particles (0.18-0.32 and 0.56-1.0 μm) for aerosolized cHAB water. These results demonstrate the potential of both O-PTIR and AFM-PTIR for studying a range of bioaerosols with vibrational spectroscopy.

{"title":"Bioaerosol Characterization with Vibrational Spectroscopy: Overcoming Fluorescence with Photothermal Infrared (PTIR) Spectroscopy.","authors":"Jia H Shi, Carlie J Poworoznek, Rebecca L Parham, Katherine R Kolozsvari, Nicole E Olson, Yao Xiao, Ziying Lei, Johnna A Birbeck, Stephen J Jacquemin, Judy A Westrick, Andrew P Ault","doi":"10.1021/acs.jpca.4c07848","DOIUrl":"10.1021/acs.jpca.4c07848","url":null,"abstract":"<p><p>Aerosols containing biological material (i.e., bioaerosols) impact public health by transporting toxins, allergens, and diseases and impact the climate by nucleating ice crystals and cloud droplets. Single particle characterization of primary biological aerosol particles (PBAPs) is essential, as individual particle physicochemical properties determine their impacts. Vibrational spectroscopies, such as infrared (IR) or Raman spectroscopy, provide detailed information about the biological components within atmospheric aerosols but these techniques have traditionally been limited due to the diffraction limit of IR radiation (particles >10 μm) and fluorescence of bioaerosol components overwhelming the Raman signal. Herein, we use photothermal infrared spectroscopy (PTIR) to overcome these limitations and characterize individual PBAPs down to 0.18 μm. Both optical-PTIR (O-PTIR) and atomic force microscopy-PTIR (AFM-PTIR) were used to characterize bioaerosol particles generated from a cyanobacterial harmful algal bloom (cHAB) dominated by <i>Planktothrix agardhii</i>. PTIR spectra contained modes consistent with traditional Fourier transform infrared (FTIR) spectra for biological species, including amide I (1630-1700 cm<sup>-1</sup>) and amide II (1530-1560 cm<sup>-1</sup>). The fractions of particles containing biological materials were greater in supermicron particles (1.8-3.2 μm) than in submicron particles (0.18-0.32 and 0.56-1.0 μm) for aerosolized cHAB water. These results demonstrate the potential of both O-PTIR and AFM-PTIR for studying a range of bioaerosols with vibrational spectroscopy.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"1429-1440"},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143051068","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Endogenous Iron(II) Self-Enriched Fenton Nanocatalyst via FTH1 Activity Inhibition and Iron(III) Reduction for Amplified Cancer Ferroptosis Therapy.
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-06 DOI: 10.1021/acs.molpharmaceut.4c01292
Ying Chen, Qin Ma, Jun Zhang, Jianhang Li, Yu'e Wang, Yongchao Yao, Yang Ding, Xin Dai, Xinghong Luo, Linjing Wu, Ling Tao, Xiangchun Shen

Due to the increased expression of iron storage proteins in cancer cells, utilizing the endogenous iron-catalyzed Fenton reaction for cancer ferroptosis therapy has recently emerged as a prominent research focus. However, endogenous iron primarily exists within ferroxidase FTH1 in the Fe (III)-bound state, hindering the effective catalysis of the Fenton reaction. Herein, an endogenous iron(II) self-enriched Fenton nanocatalyst (BAI@cLANCs) is fabricated by encapsulating the FTH1 inhibitor baicalin (BAI) in cross-linked lipoic acid nanocarriers (cLANCs) to amplify endogenous ferroptosis. Once internalized, BAI@cLANCs are disrupted by glutathione (GSH) in tumor cells to release BAI, which inhibits FTH1 activity and hinders Fe2+ oxidation. Meanwhile, cLANCs degrade into dihydrolipoic acid (DHLA), which reduces Fe3+ to Fe2+, synergically enriching endogenous Fe2+. Simultaneously, both BAI and DHLA stimulate H2O2 production and facilitate the Fenton reaction to produce abundant ·OH, thereby triggering lipid peroxidation and inducing tumor ferroptosis. Moreover, the reduction of Fe3+ to Fe2+ depletes GSH, facilitating ·OH production and inactivating glutathione peroxidase-4, ultimately amplifying tumor ferroptosis. Overall, this work highlights the potential of an endogenous iron(II) self-enriched Fenton nanocatalyst for cancer ferroptosis therapy, providing a paradigm for amplifying endogenous ferroptosis by inhibiting FTH1 activity and reducing iron(III) to enrich endogenous iron(II).

{"title":"Endogenous Iron(II) Self-Enriched Fenton Nanocatalyst via FTH1 Activity Inhibition and Iron(III) Reduction for Amplified Cancer Ferroptosis Therapy.","authors":"Ying Chen, Qin Ma, Jun Zhang, Jianhang Li, Yu'e Wang, Yongchao Yao, Yang Ding, Xin Dai, Xinghong Luo, Linjing Wu, Ling Tao, Xiangchun Shen","doi":"10.1021/acs.molpharmaceut.4c01292","DOIUrl":"https://doi.org/10.1021/acs.molpharmaceut.4c01292","url":null,"abstract":"<p><p>Due to the increased expression of iron storage proteins in cancer cells, utilizing the endogenous iron-catalyzed Fenton reaction for cancer ferroptosis therapy has recently emerged as a prominent research focus. However, endogenous iron primarily exists within ferroxidase FTH1 in the Fe (III)-bound state, hindering the effective catalysis of the Fenton reaction. Herein, an endogenous iron(II) self-enriched Fenton nanocatalyst (BAI@cLANCs) is fabricated by encapsulating the FTH1 inhibitor baicalin (BAI) in cross-linked lipoic acid nanocarriers (cLANCs) to amplify endogenous ferroptosis. Once internalized, BAI@cLANCs are disrupted by glutathione (GSH) in tumor cells to release BAI, which inhibits FTH1 activity and hinders Fe<sup>2+</sup> oxidation. Meanwhile, cLANCs degrade into dihydrolipoic acid (DHLA), which reduces Fe<sup>3+</sup> to Fe<sup>2+</sup>, synergically enriching endogenous Fe<sup>2+</sup>. Simultaneously, both BAI and DHLA stimulate H<sub>2</sub>O<sub>2</sub> production and facilitate the Fenton reaction to produce abundant <sup>·</sup>OH, thereby triggering lipid peroxidation and inducing tumor ferroptosis. Moreover, the reduction of Fe<sup>3+</sup> to Fe<sup>2+</sup> depletes GSH, facilitating <sup>·</sup>OH production and inactivating glutathione peroxidase-4, ultimately amplifying tumor ferroptosis. Overall, this work highlights the potential of an endogenous iron(II) self-enriched Fenton nanocatalyst for cancer ferroptosis therapy, providing a paradigm for amplifying endogenous ferroptosis by inhibiting FTH1 activity and reducing iron(III) to enrich endogenous iron(II).</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143363262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evidence for Competing Proton-Coupled Reaction Pathways of Molecular Triads in a Low-Polarity Solvent.
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 DOI: 10.1021/acs.jpca.4c05734
Laura F Cotter, Giovanny A Parada, Rohit Bhide, Belinda Pettersson Rimgard, James M Mayer, Leif Hammarström

The temperature dependence of concerted proton-electron transfer (CPET) reactions of two anthracene-phenol-pyridine (An-PhOH-py) triads is investigated in toluene. Light excitation forms an anthracene local excited state (1*An), which undergoes CPET to form a charge separated state (CSS, An•--PhO-pyH+), which in turn undergoes CPET charge recombination (CR). In toluene, compared with polar solvents, the CSS is energetically destabilized. First, this makes another reaction competitive with CPET, which we propose is proton-coupled energy transfer (PCEnT) from 1*An to form the short-lived excited state keto tautomer of the phenol-pyridine subunit (*[PhO═pyH]). Second, it puts CR deep into the Marcus inverted region, and CSS lifetimes therefore reach several nanoseconds at room temperature. The slow kinetics makes CR to the anthracene triplet state (3*An) competitive, as well as another reaction that is strongly activated and dominates CSS deactivation at T ≥ 240 K for one of the triads. The latter is proposed to be CR via initial formation of the same [*PhO═PyH] state as above by an unusual electron transfer (ET) from An•- to pyH+, instead of CR with the juxtaposed PhO. The two different pathways to form *[PhO═pyH] lead to CSS yields and lifetimes that vary significantly with temperature, and in markedly different ways between the triads. This is rationalized by the differences in the energies of the states involved. The results broaden the scope and understanding of the still rare phenomena of inverted CPET and PCEnT and may aid toward their use in solar fuels and photoredox catalysis.

{"title":"Evidence for Competing Proton-Coupled Reaction Pathways of Molecular Triads in a Low-Polarity Solvent.","authors":"Laura F Cotter, Giovanny A Parada, Rohit Bhide, Belinda Pettersson Rimgard, James M Mayer, Leif Hammarström","doi":"10.1021/acs.jpca.4c05734","DOIUrl":"https://doi.org/10.1021/acs.jpca.4c05734","url":null,"abstract":"<p><p>The temperature dependence of concerted proton-electron transfer (CPET) reactions of two anthracene-phenol-pyridine (An-PhOH-py) triads is investigated in toluene. Light excitation forms an anthracene local excited state (<sup>1<sup>*</sup></sup>An), which undergoes CPET to form a charge separated state (CSS, An<sup>•-</sup>-PhO<sup>•</sup>-pyH<sup>+</sup>), which in turn undergoes CPET charge recombination (CR). In toluene, compared with polar solvents, the CSS is energetically destabilized. First, this makes another reaction competitive with CPET, which we propose is proton-coupled energy transfer (PCEnT) from <sup>1<sup>*</sup></sup>An to form the short-lived excited state keto tautomer of the phenol-pyridine subunit (*[PhO═pyH]). Second, it puts CR deep into the Marcus inverted region, and CSS lifetimes therefore reach several nanoseconds at room temperature. The slow kinetics makes CR to the anthracene triplet state (<sup>3<sup>*</sup></sup>An) competitive, as well as another reaction that is strongly activated and dominates CSS deactivation at <i>T</i> ≥ 240 K for one of the triads. The latter is proposed to be CR via initial formation of the same [*PhO═PyH] state as above by an unusual electron transfer (ET) from An<sup>•-</sup> to pyH<sup>+</sup>, instead of CR with the juxtaposed PhO<sup>•</sup>. The two different pathways to form *[PhO═pyH] lead to CSS yields and lifetimes that vary significantly with temperature, and in markedly different ways between the triads. This is rationalized by the differences in the energies of the states involved. The results broaden the scope and understanding of the still rare phenomena of inverted CPET and PCEnT and may aid toward their use in solar fuels and photoredox catalysis.</p>","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143363266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Disassembly of Virus-Like Particles and the Stabilizing Role of the Nucleic Acid Cargo.
IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-22 DOI: 10.1021/acs.jpcb.4c07215
Amelia W Paine, Michael F Hagan, Vinothan N Manoharan

In many simple viruses and virus-like particles, the protein capsid self-assembles around a nucleic-acid genome. Although the assembly process has been studied in detail, relatively little is known about how the capsid disassembles, a potentially important step for infection (in viruses) or cargo delivery (in virus-like particles). We investigate capsid disassembly using a coarse-grained molecular dynamics model of a T = 1 dodecahedral capsid and an RNA-like polymer. We alter the interactions between the subunits of the capsid as well as the ionic strength of the solution to induce partial or complete disassembly of self-assembled particles. We find that disassembly follows nucleation-and-growth kinetics, where the nucleation barrier is related to the interaction strengths as well as to the conformation of the polymer. In particular, we find that polymer segments that interact with adjacent subunits reinforce the subunit-subunit contacts. These results have implications for the design of virus-like particles for applications such as drug delivery. A cargo designed with reinforcement in mind might be used to control the stability of such particles and mediate disassembly.

{"title":"Disassembly of Virus-Like Particles and the Stabilizing Role of the Nucleic Acid Cargo.","authors":"Amelia W Paine, Michael F Hagan, Vinothan N Manoharan","doi":"10.1021/acs.jpcb.4c07215","DOIUrl":"10.1021/acs.jpcb.4c07215","url":null,"abstract":"<p><p>In many simple viruses and virus-like particles, the protein capsid self-assembles around a nucleic-acid genome. Although the assembly process has been studied in detail, relatively little is known about how the capsid disassembles, a potentially important step for infection (in viruses) or cargo delivery (in virus-like particles). We investigate capsid disassembly using a coarse-grained molecular dynamics model of a <i>T</i> = 1 dodecahedral capsid and an RNA-like polymer. We alter the interactions between the subunits of the capsid as well as the ionic strength of the solution to induce partial or complete disassembly of self-assembled particles. We find that disassembly follows nucleation-and-growth kinetics, where the nucleation barrier is related to the interaction strengths as well as to the conformation of the polymer. In particular, we find that polymer segments that interact with adjacent subunits reinforce the subunit-subunit contacts. These results have implications for the design of virus-like particles for applications such as drug delivery. A cargo designed with reinforcement in mind might be used to control the stability of such particles and mediate disassembly.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":" ","pages":"1516-1528"},"PeriodicalIF":2.8,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143021259","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
QM Investigation of Rare Earth Ion Interactions with First Hydration Shell Waters and Protein-Based Coordination Models.
IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-23 DOI: 10.1021/acs.jpcb.4c07361
Elizabeth E Wait, Christopher R Riley, Monica M Manginell, Amanda Peretti, Erik D Spoerke, George D Bachand, Susan B Rempe, Pengyu Ren
<p><p>Conventional methods for extracting rare earth metals (REMs) from mined mineral ores are inefficient, expensive, and environmentally damaging. Recent discovery of lanmodulin (LanM), a protein that coordinates REMs with high-affinity and selectivity over competing ions, provides inspiration for new REM refinement methods. Here, we used quantum mechanical (QM) methods to investigate trivalent lanthanide cation (Ln<sup>3+</sup>) interactions with coordination systems representing bulk solvent water and protein binding sites. Energy decomposition analysis (EDA) showed differences in the energetic components of Ln<sup>3+</sup> interaction with representatives of solvent (water, H<sub>2</sub>O) and protein binding sites (acetate, CH<sub>3</sub>COO<sup>-</sup>), highlighting the importance of accurate description of electrostatics and polarization in computational modeling of REM interactions with biological and bioinspired molecules. Relative binding free energies were obtained for Ln<sup>3+</sup> with coordination complexes originating from binding sites in PDB structures of a lanthanum binding peptide (PDB entry 7CCO) and LanM, with explicit consideration of the first hydration shell waters, according to quasi-chemical theory (QCT). Beyond the first shell, the bulk solvent environment was represented with an implicit continuum model. Ln<sup>3+</sup> interactions with (H<sub>2</sub>O)<sub>9</sub> and both binding site models became more favorable, moving down the periodic series. This trend was more pronounced with the protein binding site models than with water, resulting in affinity increasing with periodic number, except for the last REM, Lu<sup>3+</sup>, which bound less favorably than the preceding element, Yb<sup>3+</sup>. Using the truncated 7CCO binding site model, the magnitude and trend of the experimental Ln<sup>3+</sup> relative binding free energies for the whole 7CCO peptide were reproduced. Conversely, the previously reported experimental data for LanM show a preference for the earlier lanthanides; this is likely due to longer-range interactions and cooperative effects, which are not represented by the reduced models. Using the truncated 7CCO binding site model, the magnitude and trend of the experimental Ln<sup>3+</sup> relative binding free energies for the whole 7CCO peptide were reproduced. In contrast to the previously reported experimental data for LanM, the peptide preferentially binds the earlier lanthanides. This difference likely arises due to longer-range interactions and cooperative effects not represented by the peptide. Further investigation of Ln<sup>3+</sup> interactions with whole proteins using polarizable molecular mechanics models with explicit solvent is warranted to understand the influence of longer-ranged interactions, cooperativity, and bulk solvent. Nevertheless, the present work provides new insights into Ln<sup>3+</sup> interactions with biomolecules and presents an effective computational platform for
{"title":"QM Investigation of Rare Earth Ion Interactions with First Hydration Shell Waters and Protein-Based Coordination Models.","authors":"Elizabeth E Wait, Christopher R Riley, Monica M Manginell, Amanda Peretti, Erik D Spoerke, George D Bachand, Susan B Rempe, Pengyu Ren","doi":"10.1021/acs.jpcb.4c07361","DOIUrl":"10.1021/acs.jpcb.4c07361","url":null,"abstract":"&lt;p&gt;&lt;p&gt;Conventional methods for extracting rare earth metals (REMs) from mined mineral ores are inefficient, expensive, and environmentally damaging. Recent discovery of lanmodulin (LanM), a protein that coordinates REMs with high-affinity and selectivity over competing ions, provides inspiration for new REM refinement methods. Here, we used quantum mechanical (QM) methods to investigate trivalent lanthanide cation (Ln&lt;sup&gt;3+&lt;/sup&gt;) interactions with coordination systems representing bulk solvent water and protein binding sites. Energy decomposition analysis (EDA) showed differences in the energetic components of Ln&lt;sup&gt;3+&lt;/sup&gt; interaction with representatives of solvent (water, H&lt;sub&gt;2&lt;/sub&gt;O) and protein binding sites (acetate, CH&lt;sub&gt;3&lt;/sub&gt;COO&lt;sup&gt;-&lt;/sup&gt;), highlighting the importance of accurate description of electrostatics and polarization in computational modeling of REM interactions with biological and bioinspired molecules. Relative binding free energies were obtained for Ln&lt;sup&gt;3+&lt;/sup&gt; with coordination complexes originating from binding sites in PDB structures of a lanthanum binding peptide (PDB entry 7CCO) and LanM, with explicit consideration of the first hydration shell waters, according to quasi-chemical theory (QCT). Beyond the first shell, the bulk solvent environment was represented with an implicit continuum model. Ln&lt;sup&gt;3+&lt;/sup&gt; interactions with (H&lt;sub&gt;2&lt;/sub&gt;O)&lt;sub&gt;9&lt;/sub&gt; and both binding site models became more favorable, moving down the periodic series. This trend was more pronounced with the protein binding site models than with water, resulting in affinity increasing with periodic number, except for the last REM, Lu&lt;sup&gt;3+&lt;/sup&gt;, which bound less favorably than the preceding element, Yb&lt;sup&gt;3+&lt;/sup&gt;. Using the truncated 7CCO binding site model, the magnitude and trend of the experimental Ln&lt;sup&gt;3+&lt;/sup&gt; relative binding free energies for the whole 7CCO peptide were reproduced. Conversely, the previously reported experimental data for LanM show a preference for the earlier lanthanides; this is likely due to longer-range interactions and cooperative effects, which are not represented by the reduced models. Using the truncated 7CCO binding site model, the magnitude and trend of the experimental Ln&lt;sup&gt;3+&lt;/sup&gt; relative binding free energies for the whole 7CCO peptide were reproduced. In contrast to the previously reported experimental data for LanM, the peptide preferentially binds the earlier lanthanides. This difference likely arises due to longer-range interactions and cooperative effects not represented by the peptide. Further investigation of Ln&lt;sup&gt;3+&lt;/sup&gt; interactions with whole proteins using polarizable molecular mechanics models with explicit solvent is warranted to understand the influence of longer-ranged interactions, cooperativity, and bulk solvent. Nevertheless, the present work provides new insights into Ln&lt;sup&gt;3+&lt;/sup&gt; interactions with biomolecules and presents an effective computational platform for ","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":" ","pages":"1529-1543"},"PeriodicalIF":2.8,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143027496","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Greater Influence of Density on the Electrical Properties of an Organic Semiconductor Glass Compared to Molecular Orientation.
IF 2.8 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-25 DOI: 10.1021/acs.jpcb.4c06512
Gwiwon Jang, Taewoo Kim, Junho Lee, Joonsuk Huh, Seong Eun Kim, So Youn Kim, Yasushi Koishikawa, Ohyun Kwon, Keewook Paeng

Physical vapor deposition is widely used in the fabrication of organic light-emitting diodes and has the potential to adjust the density and orientation through substrate temperature control, which may lead to enhanced electrical performance. However, it is unclear whether this enhanced property is because of the horizontal molecular orientation or the increased density. The effects of the density and orientation on the electrical properties of a potential electron transport material, (3-dibenzo[c,h]acridin-7-yl)phenyl)diphenylphosphine oxide (TPPO-dibenzacridine), were investigated. According to the gyration tensor analysis, TPPO-dibenzacridine resembled an oblate ellipsoid. Furthermore, these films exhibited the highest density when prepared at a substrate temperature of 87.5% of the glass transition temperature with an increase in density of approximately 1.5%. Variable angle spectroscopic ellipsometry measurements confirmed that the transition dipole moment direction of the dibenzacridine moiety, which is involved in the electrical properties, remained isotropic at this temperature. Although horizontal orientations are known to optimize their π-π overlap and improve the electrical properties, the lowest driving voltage was observed under these conditions, which led to the conclusion that the enhanced electrical properties of TPPO-dibenzacridine are greatly influenced by the increased density rather than by the molecular orientation.

{"title":"Greater Influence of Density on the Electrical Properties of an Organic Semiconductor Glass Compared to Molecular Orientation.","authors":"Gwiwon Jang, Taewoo Kim, Junho Lee, Joonsuk Huh, Seong Eun Kim, So Youn Kim, Yasushi Koishikawa, Ohyun Kwon, Keewook Paeng","doi":"10.1021/acs.jpcb.4c06512","DOIUrl":"10.1021/acs.jpcb.4c06512","url":null,"abstract":"<p><p>Physical vapor deposition is widely used in the fabrication of organic light-emitting diodes and has the potential to adjust the density and orientation through substrate temperature control, which may lead to enhanced electrical performance. However, it is unclear whether this enhanced property is because of the horizontal molecular orientation or the increased density. The effects of the density and orientation on the electrical properties of a potential electron transport material, (3-dibenzo[c,h]acridin-7-yl)phenyl)diphenylphosphine oxide (TPPO-dibenzacridine), were investigated. According to the gyration tensor analysis, TPPO-dibenzacridine resembled an oblate ellipsoid. Furthermore, these films exhibited the highest density when prepared at a substrate temperature of 87.5% of the glass transition temperature with an increase in density of approximately 1.5%. Variable angle spectroscopic ellipsometry measurements confirmed that the transition dipole moment direction of the dibenzacridine moiety, which is involved in the electrical properties, remained isotropic at this temperature. Although horizontal orientations are known to optimize their π-π overlap and improve the electrical properties, the lowest driving voltage was observed under these conditions, which led to the conclusion that the enhanced electrical properties of TPPO-dibenzacridine are greatly influenced by the increased density rather than by the molecular orientation.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":" ","pages":"1689-1696"},"PeriodicalIF":2.8,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143035366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Accelerating Fock Build via Hybrid Analytical-Numerical Integration.
IF 2.7 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2025-02-06 Epub Date: 2025-01-23 DOI: 10.1021/acs.jpca.4c07454
Yong Zhang, Rongding Lei, Bingbing Suo, Wenjian Liu
<p><p>A hybrid analytical-numerical integration scheme is introduced to accelerate the Fock build in self-consistent field (SCF) and time-dependent density functional theory (TDDFT) calculations. To evaluate the Coulomb matrix <b>J</b>[<b>D</b>], the density matrix <b>D</b> is first decomposed into two parts, the superposition of atomic density matrices <b>D</b><sub>⊕</sub><sup><i>A</i></sup> and the rest <b>D</b><sup><i>R</i></sup> = <b>D</b>-<b>D</b><sub>⊕</sub><sup><i>A</i></sup>. While <b>J</b>[<b>D</b><sub>⊕</sub><sup><i>A</i></sup>] is evaluated analytically, <b>J</b>[<b>D</b><sup><i>R</i></sup>] is evaluated fully numerically [with the multipole expansion of the Coulomb potential (MECP)] during the SCF iterations. Upon convergence, <b>D</b><sup><i>R</i></sup> is further split into those of near (<b>D</b><sup><i>RC</i></sup>) and distant (<b>D</b><sup><i>RL</i></sup>) atomic orbital (AO) pairs, such that <b>J</b>[<b>D</b><sup><i>RC</i></sup>] and <b>J</b>[<b>D</b><sup><i>RL</i></sup>] are evaluated seminumerically and fully numerically (with MECP). Such a hybrid <b>J</b>-build is dubbed "analytic-MECP" (aMECP). Likewise, the analytic evaluation of <b>K</b>[<b>D</b><sub>⊕</sub><sup><i>A</i></sup>] and seminumerical evaluation of <b>K</b>[<b>D</b><sup><i>R</i></sup>] are also invoked for the construction of the exchange matrix <b>K</b>[<b>D</b>] during the SCF iterations. The chain-of-spheres (COSX) algorithm [Chem. Phys. 356, 98 (2009]) is employed for <b>K</b>[<b>D</b><sup><i>R</i></sup>] but with a revised construction of the S-junctions for overlap AO pairs. To distinguish from the original COSX algorithm (which does not involve the partition of the density matrix <b>D</b>), we denote the presently revised variant as COSx. Upon convergence, <b>D</b><sup><i>R</i></sup> is further split into those of near (<b>D</b><sup><i>RC</i></sup>) and distant (<b>D</b><sup><i>RL</i></sup>) AO pairs followed by a rescaling, leading to <math><msup><mover><mi>D</mi><mo>~</mo></mover><mrow><mi>R</mi><mi>C</mi></mrow></msup></math> and <math><msup><mover><mi>D</mi><mo>~</mo></mover><mrow><mi>R</mi><mi>L</mi></mrow></msup></math>, respectively. <math><mi>K</mi><mrow><mo>[</mo><msup><mover><mi>D</mi><mo>~</mo></mover><mrow><mi>R</mi><mi>C</mi></mrow></msup><mo>]</mo></mrow></math> and <math><mi>K</mi><mrow><mo>[</mo><msup><mover><mi>D</mi><mo>~</mo></mover><mrow><mi>R</mi><mi>L</mi></mrow></msup><mo>]</mo></mrow></math> are then evaluated analytically and seminumerically (with COSx), respectively. Such a hybrid <b>K</b>-build is dubbed "analytic-COSx" (aCOSx). Extensive numerical experimentations reveal that the combination of aMECP and aCOSx is highly accurate for ground state SCF calculations (<math><mo><</mo><mi>μ</mi><msub><mi>E</mi><mi>h</mi></msub><mo>/</mo><mtext>atom</mtext></math> error in energy) and is particularly efficient for calculations of large molecules with extended basis sets. As for TDDFT excitation energies, a medium grid for MECP and a
{"title":"Accelerating Fock Build via Hybrid Analytical-Numerical Integration.","authors":"Yong Zhang, Rongding Lei, Bingbing Suo, Wenjian Liu","doi":"10.1021/acs.jpca.4c07454","DOIUrl":"10.1021/acs.jpca.4c07454","url":null,"abstract":"&lt;p&gt;&lt;p&gt;A hybrid analytical-numerical integration scheme is introduced to accelerate the Fock build in self-consistent field (SCF) and time-dependent density functional theory (TDDFT) calculations. To evaluate the Coulomb matrix &lt;b&gt;J&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;], the density matrix &lt;b&gt;D&lt;/b&gt; is first decomposed into two parts, the superposition of atomic density matrices &lt;b&gt;D&lt;/b&gt;&lt;sub&gt;⊕&lt;/sub&gt;&lt;sup&gt;&lt;i&gt;A&lt;/i&gt;&lt;/sup&gt; and the rest &lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt; = &lt;b&gt;D&lt;/b&gt;-&lt;b&gt;D&lt;/b&gt;&lt;sub&gt;⊕&lt;/sub&gt;&lt;sup&gt;&lt;i&gt;A&lt;/i&gt;&lt;/sup&gt;. While &lt;b&gt;J&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sub&gt;⊕&lt;/sub&gt;&lt;sup&gt;&lt;i&gt;A&lt;/i&gt;&lt;/sup&gt;] is evaluated analytically, &lt;b&gt;J&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt;] is evaluated fully numerically [with the multipole expansion of the Coulomb potential (MECP)] during the SCF iterations. Upon convergence, &lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt; is further split into those of near (&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RC&lt;/i&gt;&lt;/sup&gt;) and distant (&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RL&lt;/i&gt;&lt;/sup&gt;) atomic orbital (AO) pairs, such that &lt;b&gt;J&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RC&lt;/i&gt;&lt;/sup&gt;] and &lt;b&gt;J&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RL&lt;/i&gt;&lt;/sup&gt;] are evaluated seminumerically and fully numerically (with MECP). Such a hybrid &lt;b&gt;J&lt;/b&gt;-build is dubbed \"analytic-MECP\" (aMECP). Likewise, the analytic evaluation of &lt;b&gt;K&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sub&gt;⊕&lt;/sub&gt;&lt;sup&gt;&lt;i&gt;A&lt;/i&gt;&lt;/sup&gt;] and seminumerical evaluation of &lt;b&gt;K&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt;] are also invoked for the construction of the exchange matrix &lt;b&gt;K&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;] during the SCF iterations. The chain-of-spheres (COSX) algorithm [Chem. Phys. 356, 98 (2009]) is employed for &lt;b&gt;K&lt;/b&gt;[&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt;] but with a revised construction of the S-junctions for overlap AO pairs. To distinguish from the original COSX algorithm (which does not involve the partition of the density matrix &lt;b&gt;D&lt;/b&gt;), we denote the presently revised variant as COSx. Upon convergence, &lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;R&lt;/i&gt;&lt;/sup&gt; is further split into those of near (&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RC&lt;/i&gt;&lt;/sup&gt;) and distant (&lt;b&gt;D&lt;/b&gt;&lt;sup&gt;&lt;i&gt;RL&lt;/i&gt;&lt;/sup&gt;) AO pairs followed by a rescaling, leading to &lt;math&gt;&lt;msup&gt;&lt;mover&gt;&lt;mi&gt;D&lt;/mi&gt;&lt;mo&gt;~&lt;/mo&gt;&lt;/mover&gt;&lt;mrow&gt;&lt;mi&gt;R&lt;/mi&gt;&lt;mi&gt;C&lt;/mi&gt;&lt;/mrow&gt;&lt;/msup&gt;&lt;/math&gt; and &lt;math&gt;&lt;msup&gt;&lt;mover&gt;&lt;mi&gt;D&lt;/mi&gt;&lt;mo&gt;~&lt;/mo&gt;&lt;/mover&gt;&lt;mrow&gt;&lt;mi&gt;R&lt;/mi&gt;&lt;mi&gt;L&lt;/mi&gt;&lt;/mrow&gt;&lt;/msup&gt;&lt;/math&gt;, respectively. &lt;math&gt;&lt;mi&gt;K&lt;/mi&gt;&lt;mrow&gt;&lt;mo&gt;[&lt;/mo&gt;&lt;msup&gt;&lt;mover&gt;&lt;mi&gt;D&lt;/mi&gt;&lt;mo&gt;~&lt;/mo&gt;&lt;/mover&gt;&lt;mrow&gt;&lt;mi&gt;R&lt;/mi&gt;&lt;mi&gt;C&lt;/mi&gt;&lt;/mrow&gt;&lt;/msup&gt;&lt;mo&gt;]&lt;/mo&gt;&lt;/mrow&gt;&lt;/math&gt; and &lt;math&gt;&lt;mi&gt;K&lt;/mi&gt;&lt;mrow&gt;&lt;mo&gt;[&lt;/mo&gt;&lt;msup&gt;&lt;mover&gt;&lt;mi&gt;D&lt;/mi&gt;&lt;mo&gt;~&lt;/mo&gt;&lt;/mover&gt;&lt;mrow&gt;&lt;mi&gt;R&lt;/mi&gt;&lt;mi&gt;L&lt;/mi&gt;&lt;/mrow&gt;&lt;/msup&gt;&lt;mo&gt;]&lt;/mo&gt;&lt;/mrow&gt;&lt;/math&gt; are then evaluated analytically and seminumerically (with COSx), respectively. Such a hybrid &lt;b&gt;K&lt;/b&gt;-build is dubbed \"analytic-COSx\" (aCOSx). Extensive numerical experimentations reveal that the combination of aMECP and aCOSx is highly accurate for ground state SCF calculations (&lt;math&gt;&lt;mo&gt;&lt;&lt;/mo&gt;&lt;mi&gt;μ&lt;/mi&gt;&lt;msub&gt;&lt;mi&gt;E&lt;/mi&gt;&lt;mi&gt;h&lt;/mi&gt;&lt;/msub&gt;&lt;mo&gt;/&lt;/mo&gt;&lt;mtext&gt;atom&lt;/mtext&gt;&lt;/math&gt; error in energy) and is particularly efficient for calculations of large molecules with extended basis sets. As for TDDFT excitation energies, a medium grid for MECP and a ","PeriodicalId":59,"journal":{"name":"The Journal of Physical Chemistry A","volume":" ","pages":"1492-1503"},"PeriodicalIF":2.7,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143021334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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