Hydrogen is an abundant element poised to play a central role in future energy systems. When a lightweight hydrogen ion (proton, H+) is used as a charge carrier in Faradaic storage, it enables rapid solid-state conduction, offering strong potential for high-capacity, fast-charging electrochemical energy storage. However, the development of proton-based systems has been limited by the scarcity of suitable proton-host materials. In this study, we investigate the mechanisms of proton (de)intercalation in transition metal oxides using VO2 polymorphs as a model system, with a focus on the role of lattice oxygen environments. Our findings reveal that protons preferentially occupy less-coordinated oxygen sites, which are energetically and structurally favorable. In addition, the presence of continuous H···O hydrogen-bonding networks facilitates solid-state proton transport via a Grotthuss-like mechanism. These insights provide a foundation for identifying and designing new proton-host materials, offering a promising strategy and design principle for advancing high-rate, high-capacity energy storage systems.
{"title":"Prerequisite of Oxygen Local Environment for Facile Proton Intercalation into Transition-Metal Oxides.","authors":"Sunghyun Park, Shin-Ichi Nishimura, Jinshi Li, Atsushi Kitada, Seongeun Lee, Won-Sub Yoon, Atsuo Yamada","doi":"10.1021/jacs.5c22803","DOIUrl":"https://doi.org/10.1021/jacs.5c22803","url":null,"abstract":"<p><p>Hydrogen is an abundant element poised to play a central role in future energy systems. When a lightweight hydrogen ion (proton, H<sup>+</sup>) is used as a charge carrier in Faradaic storage, it enables rapid solid-state conduction, offering strong potential for high-capacity, fast-charging electrochemical energy storage. However, the development of proton-based systems has been limited by the scarcity of suitable proton-host materials. In this study, we investigate the mechanisms of proton (de)intercalation in transition metal oxides using VO<sub>2</sub> polymorphs as a model system, with a focus on the role of lattice oxygen environments. Our findings reveal that protons preferentially occupy less-coordinated oxygen sites, which are energetically and structurally favorable. In addition, the presence of continuous H···O hydrogen-bonding networks facilitates solid-state proton transport via a Grotthuss-like mechanism. These insights provide a foundation for identifying and designing new proton-host materials, offering a promising strategy and design principle for advancing high-rate, high-capacity energy storage systems.</p>","PeriodicalId":49,"journal":{"name":"Journal of the American Chemical Society","volume":" ","pages":""},"PeriodicalIF":15.6,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146148448","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10DOI: 10.1021/acssensors.5c03434
Sabrina Napoletano, Maria Isabella Maremonti, Edmondo Battista, Paolo Antonio Netti, Filippo Causa
Sensitive and spatially resolved detection of intracellular microRNAs (miRNAs) is essential for understanding gene regulatory networks at the single-cell level, yet low abundance and heterogeneous distribution challenge conventional methods. Despite the availability of a variety of particle biosensors, their intracellular use for live-cell miRNA detection remains challenging. Here, we demonstrate an enabling amplification-free detection and spatial mapping of miRNAs in single cells. We employ large (∼600 nm) biocompatible microgels, which provide high local probe density, protect molecular beacons from nuclease degradation, and enhance fluorescence signals upon hybridization with target miRNAs. Microfluidic mechanoporation efficiently delivers the microgels directly into the cytosol without perturbing endogenous miRNA levels or cell viability. Functionalized microgels generate robust fluorescence signals upon hybridization with target miRNAs. In intracellular sensing, the system achieves a low-picomolar limit of detection (5.6 pM) and a dynamic range spanning three orders of magnitude (pM-nM). The biosensor also exhibits excellent specificity; negligible fluorescence was observed both with nontarget and precursor miRNAs. Application in healthy (MCF10A) and cancer (MCF7) breast cells enabled single-cell quantification of endogenous miR-191-5p and miR-363-5p, revealing variability both among individual cells and between cell types, along with distinct intracellular localization patterns reflecting multiple concentration levels. The approach combines high sensitivity, wide dynamic range, quantitative precision, and spatial resolution, allowing amplification-free monitoring of miRNA expression in live cells. This versatile platform provides a powerful tool for intracellular biosensing, with potential applications in live-cell diagnostics, therapeutic response profiling, and studies of single-cell gene regulation.
{"title":"miRNA Cell Tracer: Multifunctional Microgels for Spatially Resolved and Wide-Range Detection of Intracellular miRNA at Single-Cell Level.","authors":"Sabrina Napoletano, Maria Isabella Maremonti, Edmondo Battista, Paolo Antonio Netti, Filippo Causa","doi":"10.1021/acssensors.5c03434","DOIUrl":"https://doi.org/10.1021/acssensors.5c03434","url":null,"abstract":"<p><p>Sensitive and spatially resolved detection of intracellular microRNAs (miRNAs) is essential for understanding gene regulatory networks at the single-cell level, yet low abundance and heterogeneous distribution challenge conventional methods. Despite the availability of a variety of particle biosensors, their intracellular use for live-cell miRNA detection remains challenging. Here, we demonstrate an enabling amplification-free detection and spatial mapping of miRNAs in single cells. We employ large (∼600 nm) biocompatible microgels, which provide high local probe density, protect molecular beacons from nuclease degradation, and enhance fluorescence signals upon hybridization with target miRNAs. Microfluidic mechanoporation efficiently delivers the microgels directly into the cytosol without perturbing endogenous miRNA levels or cell viability. Functionalized microgels generate robust fluorescence signals upon hybridization with target miRNAs. In intracellular sensing, the system achieves a low-picomolar limit of detection (5.6 pM) and a dynamic range spanning three orders of magnitude (pM-nM). The biosensor also exhibits excellent specificity; negligible fluorescence was observed both with nontarget and precursor miRNAs. Application in healthy (MCF10A) and cancer (MCF7) breast cells enabled single-cell quantification of endogenous miR-191-5p and miR-363-5p, revealing variability both among individual cells and between cell types, along with distinct intracellular localization patterns reflecting multiple concentration levels. The approach combines high sensitivity, wide dynamic range, quantitative precision, and spatial resolution, allowing amplification-free monitoring of miRNA expression in live cells. This versatile platform provides a powerful tool for intracellular biosensing, with potential applications in live-cell diagnostics, therapeutic response profiling, and studies of single-cell gene regulation.</p>","PeriodicalId":24,"journal":{"name":"ACS Sensors","volume":" ","pages":"XXX"},"PeriodicalIF":9.1,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146148469","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Molecular understanding of the CO2-CH4-H2O mixture in clay interlayers provides crucial insights into many geochemical processes in CO2-enchanced oil/gas recovery and CO2 subsurface sequestrations. In this work, we developed new molecular models by optimizing the unlike-pair Lennard-Jones (LJ) parameters for the CO2-H2O, CH4-H2O and CO2-CH4 binary mixtures. The optimization utilizes the coupling parameter method in combination with Gibbs ensemble Monte Carlo (GEMC) simulations. The transferability of binary-derived parameters to ternary CO2-CH4-H2O system is further demonstrated. These optimized parameters are used to study CO2-CH4-H2O mixtures in Na-montmorillonite interlayers at 323 K and 90 bar, through grand-canonical Monte Carlo (GCMC) and molecular dynamics (MD) simulations. Chemical potentials of CO2, CH4, and H2O in clay interlayer are calculated through the equation of state (EOS) with the Lennard-Jones referenced Statistical Associating Fluid Theory (SAFT-LJ), which is suitable for aqueous mixtures. The equilibrium basal spacing distances and species concentrations under different relative humidity (RH) and CO2/CH4 mole fractions are determined through extensive GCMC simulations. Importantly, using the new molecular models, we find that the trend of the sorbed CO2 content versus the sorbed H2O content shows good agreement with in situ infrared (IR) spectroscopy data by Loring et al. [Environmental Science& Technology, 2021, 55, 11192-11203]. While the predicted CO2 concentrations in the monolayer hydration state (1W) is higher than the experimental results due to the heterogeneous expansion of the clay mineral in experiments, the CO2 content in the bilayer hydration state (2W) compares remarkably well with the experimental data. The CH4 adsorption in clay interlayers is found substantially lower than that of CO2. In general, GCMC results show that water intercalation under high RH suppresses the sorption of CO2 and CH4, and that Na-montmorillonite preferentially adsorbs CO2 over CH4.
{"title":"Molecular Simulation Studies of CO<sub>2</sub>-CH<sub>4</sub>-H<sub>2</sub>O Ternary Geological Fluids in Clay Confinements.","authors":"Motong Bian, Qi Rao, Rongguang Xu, Lukas Vlcek, Yongsheng Leng","doi":"10.1021/acs.langmuir.5c05556","DOIUrl":"https://doi.org/10.1021/acs.langmuir.5c05556","url":null,"abstract":"<p><p>Molecular understanding of the CO<sub>2</sub>-CH<sub>4</sub>-H<sub>2</sub>O mixture in clay interlayers provides crucial insights into many geochemical processes in CO<sub>2</sub>-enchanced oil/gas recovery and CO<sub>2</sub> subsurface sequestrations. In this work, we developed new molecular models by optimizing the unlike-pair Lennard-Jones (LJ) parameters for the CO<sub>2</sub>-H<sub>2</sub>O, CH<sub>4</sub>-H<sub>2</sub>O and CO<sub>2</sub>-CH<sub>4</sub> binary mixtures. The optimization utilizes the coupling parameter method in combination with Gibbs ensemble Monte Carlo (GEMC) simulations. The transferability of binary-derived parameters to ternary CO<sub>2</sub>-CH<sub>4</sub>-H<sub>2</sub>O system is further demonstrated. These optimized parameters are used to study CO<sub>2</sub>-CH<sub>4</sub>-H<sub>2</sub>O mixtures in Na-montmorillonite interlayers at 323 K and 90 bar, through grand-canonical Monte Carlo (GCMC) and molecular dynamics (MD) simulations. Chemical potentials of CO<sub>2</sub>, CH<sub>4</sub>, and H<sub>2</sub>O in clay interlayer are calculated through the equation of state (EOS) with the Lennard-Jones referenced Statistical Associating Fluid Theory (SAFT-LJ), which is suitable for aqueous mixtures. The equilibrium basal spacing distances and species concentrations under different relative humidity (RH) and CO<sub>2</sub>/CH<sub>4</sub> mole fractions are determined through extensive GCMC simulations. Importantly, using the new molecular models, we find that the trend of the sorbed CO<sub>2</sub> content versus the sorbed H<sub>2</sub>O content shows good agreement with <i>in situ</i> infrared (IR) spectroscopy data by Loring et al. [<i>Environmental Science& Technology</i>, <b>2021</b>, 55, 11192-11203]. While the predicted CO<sub>2</sub> concentrations in the monolayer hydration state (1W) is higher than the experimental results due to the heterogeneous expansion of the clay mineral in experiments, the CO<sub>2</sub> content in the bilayer hydration state (2W) compares remarkably well with the experimental data. The CH<sub>4</sub> adsorption in clay interlayers is found substantially lower than that of CO<sub>2</sub>. In general, GCMC results show that water intercalation under high RH suppresses the sorption of CO<sub>2</sub> and CH<sub>4</sub>, and that Na-montmorillonite preferentially adsorbs CO<sub>2</sub> over CH<sub>4</sub>.</p>","PeriodicalId":50,"journal":{"name":"Langmuir","volume":" ","pages":""},"PeriodicalIF":3.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146148507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10Epub Date: 2026-01-29DOI: 10.1021/acs.langmuir.5c05757
Tian-Xiong Wang, Jiande Dong, Siyu Ji, Shuyao Tian, Xu-Hui Jin
Gold, as a precious metal, holds irreplaceable significance in financial systems, the electronics industry, and cutting-edge technologies due to its unique physicochemical properties. To address the technical demands for gold recovery from electronic waste, we designed and synthesized ethylenedioxythiophene-functionalized conjugated organic polymers (EDOT-COPs) as Au(III) adsorbents. EDOT-COPs possess moderate porosity, thermal stability up to 350 °C, and chemical stability in acidic environments. As for the adsorption performance, EDOT-COPs achieve Au(III) uptake capacities exceeding 1700 mg g-1 and selectively remove more than 96% of Au(III) from the mixed solutions containing eight competing metal ions such as Cu(II), Ni(II), and Pb(II). After eight consecutive adsorption-desorption cycles, EDOT-COPs still maintain high adsorption efficiency and good structural integrity. Mechanistic studies reveal that there are strong coordination bonds between EDOT groups and AuCl4- complexes in acidic media, along with the partial reduction of adsorbed Au(III) species. Furthermore, EDOT-COPs also demonstrate selective gold recovery from acid leachates. This work highlights the potential of functional-group-directed polymer design for developing efficient and stable adsorbents for precious metal recovery.
{"title":"Ethylenedioxythiophene-Based Conjugated Organic Polymers for Gold Recovery from Electronic Waste.","authors":"Tian-Xiong Wang, Jiande Dong, Siyu Ji, Shuyao Tian, Xu-Hui Jin","doi":"10.1021/acs.langmuir.5c05757","DOIUrl":"10.1021/acs.langmuir.5c05757","url":null,"abstract":"<p><p>Gold, as a precious metal, holds irreplaceable significance in financial systems, the electronics industry, and cutting-edge technologies due to its unique physicochemical properties. To address the technical demands for gold recovery from electronic waste, we designed and synthesized ethylenedioxythiophene-functionalized conjugated organic polymers (EDOT-COPs) as Au(III) adsorbents. EDOT-COPs possess moderate porosity, thermal stability up to 350 °C, and chemical stability in acidic environments. As for the adsorption performance, EDOT-COPs achieve Au(III) uptake capacities exceeding 1700 mg g<sup>-1</sup> and selectively remove more than 96% of Au(III) from the mixed solutions containing eight competing metal ions such as Cu(II), Ni(II), and Pb(II). After eight consecutive adsorption-desorption cycles, EDOT-COPs still maintain high adsorption efficiency and good structural integrity. Mechanistic studies reveal that there are strong coordination bonds between EDOT groups and AuCl<sub>4</sub><sup>-</sup> complexes in acidic media, along with the partial reduction of adsorbed Au(III) species. Furthermore, EDOT-COPs also demonstrate selective gold recovery from acid leachates. This work highlights the potential of functional-group-directed polymer design for developing efficient and stable adsorbents for precious metal recovery.</p>","PeriodicalId":50,"journal":{"name":"Langmuir","volume":" ","pages":"4103-4113"},"PeriodicalIF":3.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146083533","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10Epub Date: 2026-01-16DOI: 10.1021/acs.jctc.5c01691
Jiseong Park, Seunghoon Lee
We assess the accuracy and limitations of the grouped-bath configuration interaction (GBCI), formerly termed the grouped-bath ansatz for the spin-flip nonorthogonal configuration interaction (SF-GNOCI), by calculating L-edge X-ray absorption spectroscopy (XAS) spectra and 2p3d resonant inelastic X-ray scattering (RIXS) spectra of transition-metal complexes. We compare the computed GBCI spectra with those from the spin-flip complete-active-space (SF-CAS) method and experiment. These comparisons demonstrate that the bath-orbital relaxation in GBCI is crucial for accurately describing both the energies and wave functions of charge-transfer states. For L-edge XAS, GBCI accounts for the core-hole relaxation neglected in SF-CAS, leading to a uniform energy shift across the spectral bands. For 2p3d RIXS, GBCI produces an energy shift in the charge-transfer band that corrects the overestimated energy in SF-CAS. Moreover, GBCI improves the wave functions of charge-transfer states, thereby correcting the RIXS intensities overestimated by SF-CAS. Nevertheless, discrepancies with experiment indicate that additional electronic correlation remains necessary. We expect that the X-ray spectral comparison presented in this study will serve as a useful benchmark for validating electronic-structure theories of transition-metal complexes.
{"title":"Assessment of Grouped-Bath Configuration Interaction for Transition-Metal Complexes by L-Edge X-ray Spectra Calculations.","authors":"Jiseong Park, Seunghoon Lee","doi":"10.1021/acs.jctc.5c01691","DOIUrl":"10.1021/acs.jctc.5c01691","url":null,"abstract":"<p><p>We assess the accuracy and limitations of the grouped-bath configuration interaction (GBCI), formerly termed the grouped-bath ansatz for the spin-flip nonorthogonal configuration interaction (SF-GNOCI), by calculating L-edge X-ray absorption spectroscopy (XAS) spectra and 2p3d resonant inelastic X-ray scattering (RIXS) spectra of transition-metal complexes. We compare the computed GBCI spectra with those from the spin-flip complete-active-space (SF-CAS) method and experiment. These comparisons demonstrate that the bath-orbital relaxation in GBCI is crucial for accurately describing both the energies and wave functions of charge-transfer states. For L-edge XAS, GBCI accounts for the core-hole relaxation neglected in SF-CAS, leading to a uniform energy shift across the spectral bands. For 2p3d RIXS, GBCI produces an energy shift in the charge-transfer band that corrects the overestimated energy in SF-CAS. Moreover, GBCI improves the wave functions of charge-transfer states, thereby correcting the RIXS intensities overestimated by SF-CAS. Nevertheless, discrepancies with experiment indicate that additional electronic correlation remains necessary. We expect that the X-ray spectral comparison presented in this study will serve as a useful benchmark for validating electronic-structure theories of transition-metal complexes.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"1312-1320"},"PeriodicalIF":5.5,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145987470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10Epub Date: 2026-01-26DOI: 10.1021/acsnano.5c12944
Hui Cheng, Tong Zeng, Xinghui Cao, Bo Zhang, Jingmei Zhang, Yaru Wang, Liang Zhang, Jianhua Yan, Shouzhu Li
As an emerging class of ceramic materials, high-entropy ceramics (HEC) have captured significant interest. Yet, their inherent brittleness and inelasticity restrict broader engineering applications like thermal protection. Here, we report a carboxylic ligand confinement strategy, integrating sol-gel electrospinning with optimized postcalcination treatment, enabling the scalable fabrication of flexible high-entropy (Y0.2Yb0.2Ho0.2Lu0.2Er0.2)3Al5O12 (RE3Al5O12) single-crystal fiber films. We initiated the process by preparing an aluminum sol and subsequently coordinating it with carboxylate under hydrochloric acid catalysis. The inorganic colloid growth is modulated by the stoichiometric addition of tartaric acid, forming a hybrid inorganic/organic sol. Then, the sol was electrospun into precursor fiber films followed by calcination at 900 °C to form flexible RE3Al5O12 films with a low density of 0.1398 g/cm3 and a low thermal conductivity of 25.1 mW·m-1·K-1. The HEC film maintains phase stability and structural integrity up to 1600 °C or in liquid nitrogen. In addition, aerogels fabricated by stacking these HEC films demonstrate an 80% strain elastic recovery and exhibit great resistance to thermal shock. This work establishes a strategy for synthesizing lightweight HEC garnet fibers poised for extreme-environment thermal protection systems.
{"title":"Scalable Fabrication of Flexible High-Entropy RE<sub>3</sub>Al<sub>5</sub>O<sub>12</sub> Garnet Ceramic Fibers for Thermal Insulation in Extreme Environments.","authors":"Hui Cheng, Tong Zeng, Xinghui Cao, Bo Zhang, Jingmei Zhang, Yaru Wang, Liang Zhang, Jianhua Yan, Shouzhu Li","doi":"10.1021/acsnano.5c12944","DOIUrl":"10.1021/acsnano.5c12944","url":null,"abstract":"<p><p>As an emerging class of ceramic materials, high-entropy ceramics (HEC) have captured significant interest. Yet, their inherent brittleness and inelasticity restrict broader engineering applications like thermal protection. Here, we report a carboxylic ligand confinement strategy, integrating sol-gel electrospinning with optimized postcalcination treatment, enabling the scalable fabrication of flexible high-entropy (Y<sub>0.2</sub>Yb<sub>0.2</sub>Ho<sub>0.2</sub>Lu<sub>0.2</sub>Er<sub>0.2</sub>)<sub>3</sub>Al<sub>5</sub>O<sub>12</sub> (RE<sub>3</sub>Al<sub>5</sub>O<sub>12</sub>) single-crystal fiber films. We initiated the process by preparing an aluminum sol and subsequently coordinating it with carboxylate under hydrochloric acid catalysis. The inorganic colloid growth is modulated by the stoichiometric addition of tartaric acid, forming a hybrid inorganic/organic sol. Then, the sol was electrospun into precursor fiber films followed by calcination at 900 °C to form flexible RE<sub>3</sub>Al<sub>5</sub>O<sub>12</sub> films with a low density of 0.1398 g/cm<sup>3</sup> and a low thermal conductivity of 25.1 mW·m<sup>-1</sup>·K<sup>-1</sup>. The HEC film maintains phase stability and structural integrity up to 1600 °C or in liquid nitrogen. In addition, aerogels fabricated by stacking these HEC films demonstrate an 80% strain elastic recovery and exhibit great resistance to thermal shock. This work establishes a strategy for synthesizing lightweight HEC garnet fibers poised for extreme-environment thermal protection systems.</p>","PeriodicalId":21,"journal":{"name":"ACS Nano","volume":" ","pages":"4046-4056"},"PeriodicalIF":16.0,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10Epub Date: 2026-01-26DOI: 10.1021/acs.jctc.5c02031
Yingfeng Zhang, Wei Xia, Kaifang Huang, Jin Xiao, John Z H Zhang
Accurately determining protein-ligand binding free energy is critical for drug design but requires computationally expensive quantum-mechanical (QM) calculations. Fragmentation methods can mitigate this cost, yet their accuracy hinges on properly modeling the polarizing chemical environment. Here we present an application and refinement of the Electrostatically Embedded Generalized Molecular Fractionation with Conjugate Caps (EE-GMFCC) approach, termed EE-GMFCC[P-L], for computing protein-ligand interaction energies. Our method efficiently obtains the total QM energy by linearly combining the energies of capped fragments embedded in a protein point-charge field and the pairwise interactions between non-neighboring fragments. After systematically investigating methodological parameters, including ligand charge, capping scheme, and basis set, we employed the approach to calculate interaction energies for a benchmark set of 21 protein-ligand systems. The resulting data set provides a high-accuracy standard for developing and validating more approximate computational methods in structure-based drug design.
{"title":"Accurate and Efficient Calculation of Protein-Ligand Interaction Energies Using an Electrostatically Embedded Fragmentation Method.","authors":"Yingfeng Zhang, Wei Xia, Kaifang Huang, Jin Xiao, John Z H Zhang","doi":"10.1021/acs.jctc.5c02031","DOIUrl":"10.1021/acs.jctc.5c02031","url":null,"abstract":"<p><p>Accurately determining protein-ligand binding free energy is critical for drug design but requires computationally expensive quantum-mechanical (QM) calculations. Fragmentation methods can mitigate this cost, yet their accuracy hinges on properly modeling the polarizing chemical environment. Here we present an application and refinement of the Electrostatically Embedded Generalized Molecular Fractionation with Conjugate Caps (EE-GMFCC) approach, termed EE-GMFCC[<i>P</i>-<i>L</i>], for computing protein-ligand interaction energies. Our method efficiently obtains the total QM energy by linearly combining the energies of capped fragments embedded in a protein point-charge field and the pairwise interactions between non-neighboring fragments. After systematically investigating methodological parameters, including ligand charge, capping scheme, and basis set, we employed the approach to calculate interaction energies for a benchmark set of 21 protein-ligand systems. The resulting data set provides a high-accuracy standard for developing and validating more approximate computational methods in structure-based drug design.</p>","PeriodicalId":45,"journal":{"name":"Journal of Chemical Theory and Computation","volume":" ","pages":"1514-1523"},"PeriodicalIF":5.5,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Breast cancer remains the most common cause of mortality among women globally. Although improvements in early detection and systemic therapies have enhanced patient outcomes, conventional treatment strategies, including free drug administration, are often plagued by significant limitations such as poor selectivity, systemic toxicity, rapid drug degradation, and low therapeutic indices. Paclitaxel (PTX), a commonly used chemotherapeutic drug, suffers from poor aqueous solubility and nonspecific distribution, resulting in severe off-target effects and reduced clinical efficacy. The present study investigates the potential of PTX-loaded nanoarchaeosomes (NAs) as a novel therapeutic for breast cancer rehabilitation. Paclitaxel-loaded nanoarchaeosomes (PTX-NAs) were synthesized and then characterized through various techniques, including Dynamic light scattering (DLS), Zeta (ζ) potential analysis, and Scanning Electron Microscopy (SEM). The DLS study defined the size of the PTX-NAs as ∼50 nm, with a stable surface charge of -59.8 mV. The efficiency of the loading of PTX into NAs was quantified to be about 92 ± 1%, followed by a significant 82 ± 3% PTX release within 12 h. In vitro anticancer research on MCF-7 breast cancer cells revealed a significant increase in the level of cellular death with PTX-NAs at a concentration of 0.08 μM (IC50), which was 3.5-fold lower than that of free paclitaxel (0.28 μM). This indicates a significant increase in the anticancer efficacy of PTX when delivered through NAs. Biocompatibility studies on NIH 3T3 fibroblast cells confirmed that NAs alone and PTX-NAs did not induce any significant toxicity, maintaining normal cellular morphology and viability, which ensures the potential safety of this nanoformulation for clinical use. These findings suggest that PTX-NAs offer a promising, targeted approach to breast cancer therapy, providing enhanced efficacy while minimizing systemic toxicity.
{"title":"Paclitaxel-Loaded Nanoarchaeosomes: An Innovative Strategy for Targeted Breast Cancer Treatment.","authors":"Subastri Ariraman, Shruti Shrikanth Rao, Bhagyashree Ashok Bhoir, Sachin Thomas, Vimalraj Selvaraj, Swathi Sudhakar","doi":"10.1021/acs.langmuir.5c05243","DOIUrl":"10.1021/acs.langmuir.5c05243","url":null,"abstract":"<p><p>Breast cancer remains the most common cause of mortality among women globally. Although improvements in early detection and systemic therapies have enhanced patient outcomes, conventional treatment strategies, including free drug administration, are often plagued by significant limitations such as poor selectivity, systemic toxicity, rapid drug degradation, and low therapeutic indices. Paclitaxel (PTX), a commonly used chemotherapeutic drug, suffers from poor aqueous solubility and nonspecific distribution, resulting in severe off-target effects and reduced clinical efficacy. The present study investigates the potential of PTX-loaded nanoarchaeosomes (NAs) as a novel therapeutic for breast cancer rehabilitation. Paclitaxel-loaded nanoarchaeosomes (PTX-NAs) were synthesized and then characterized through various techniques, including Dynamic light scattering (DLS), Zeta (ζ) potential analysis, and Scanning Electron Microscopy (SEM). The DLS study defined the size of the PTX-NAs as ∼50 nm, with a stable surface charge of -59.8 mV. The efficiency of the loading of PTX into NAs was quantified to be about 92 ± 1%, followed by a significant 82 ± 3% PTX release within 12 h. In vitro anticancer research on MCF-7 breast cancer cells revealed a significant increase in the level of cellular death with PTX-NAs at a concentration of 0.08 μM (IC<sub>50</sub>), which was 3.5-fold lower than that of free paclitaxel (0.28 μM). This indicates a significant increase in the anticancer efficacy of PTX when delivered through NAs. Biocompatibility studies on NIH 3T3 fibroblast cells confirmed that NAs alone and PTX-NAs did not induce any significant toxicity, maintaining normal cellular morphology and viability, which ensures the potential safety of this nanoformulation for clinical use. These findings suggest that PTX-NAs offer a promising, targeted approach to breast cancer therapy, providing enhanced efficacy while minimizing systemic toxicity.</p>","PeriodicalId":50,"journal":{"name":"Langmuir","volume":" ","pages":"3937-3949"},"PeriodicalIF":3.9,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049549","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-02-10Epub Date: 2026-01-27DOI: 10.1021/acs.analchem.5c07410
Xue Yang, Yao Pan, NaiSheng Wu, Huiqing Ding, Fangling Wu, Li Ding, Chuan-Fan Ding
The precise analysis of chiral drugs is crucial for elucidating their stereoselective pharmacological effects. As a commonly used fluoroquinolone antibiotic, ofloxacin (OFLX) exhibits different pharmacodynamics between its R- and S-OFLX, highlighting the need for efficient chiral analysis methods. This study developed a strategy based on trapped ion mobility spectrometry-mass spectrometry (TIMS-MS) and noncovalent complex formation for the rapid separation and quantification of ofloxacin enantiomers. Vancomycin and gentamicin C1a were selected as chiral selectors to form binary noncovalent complexes with the target enantiomers. TIMS analysis demonstrated that the complexes formed between R-/S-OFLX and both chiral selectors achieved baseline separation, with peak-to-peak resolution values of 1.94 and 3.34, respectively. To clarify the structural basis of chiral recognition, density functional theory calculations and the independent gradient model were employed, revealing key stereospecific weak interactions within the complexes, thereby providing critical atomic-level insight into the differential migration behavior observed in TIMS experiments at the molecular level. Based on these findings, both relative and absolute quantification methods for the enantiomers were established, both demonstrating excellent linearity and high sensitivity. Finally, the method was successfully applied to determine ofloxacin in artificial urine samples, achieving recoveries of no less than 70.60%, confirming its applicability in complex real-world matrices. This derivatization-free approach provides a robust and efficient solution for the rapid analysis of chiral drugs.
{"title":"Unraveling Chiral Recognition for Ofloxacin Enantiomers: An IMS-MS Study Enabled by Noncovalent Complexation and Theoretical Modeling.","authors":"Xue Yang, Yao Pan, NaiSheng Wu, Huiqing Ding, Fangling Wu, Li Ding, Chuan-Fan Ding","doi":"10.1021/acs.analchem.5c07410","DOIUrl":"10.1021/acs.analchem.5c07410","url":null,"abstract":"<p><p>The precise analysis of chiral drugs is crucial for elucidating their stereoselective pharmacological effects. As a commonly used fluoroquinolone antibiotic, ofloxacin (OFLX) exhibits different pharmacodynamics between its <i>R</i>- and <i>S</i>-OFLX, highlighting the need for efficient chiral analysis methods. This study developed a strategy based on trapped ion mobility spectrometry-mass spectrometry (TIMS-MS) and noncovalent complex formation for the rapid separation and quantification of ofloxacin enantiomers. Vancomycin and gentamicin C1a were selected as chiral selectors to form binary noncovalent complexes with the target enantiomers. TIMS analysis demonstrated that the complexes formed between <i>R</i>-/<i>S</i>-OFLX and both chiral selectors achieved baseline separation, with peak-to-peak resolution values of 1.94 and 3.34, respectively. To clarify the structural basis of chiral recognition, density functional theory calculations and the independent gradient model were employed, revealing key stereospecific weak interactions within the complexes, thereby providing critical atomic-level insight into the differential migration behavior observed in TIMS experiments at the molecular level. Based on these findings, both relative and absolute quantification methods for the enantiomers were established, both demonstrating excellent linearity and high sensitivity. Finally, the method was successfully applied to determine ofloxacin in artificial urine samples, achieving recoveries of no less than 70.60%, confirming its applicability in complex real-world matrices. This derivatization-free approach provides a robust and efficient solution for the rapid analysis of chiral drugs.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":"4285-4295"},"PeriodicalIF":6.7,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
All-solution-processed perovskite optoelectronic devices are promising for scalable, sustainable manufacturing, yet their performance remains inferior to vacuum-deposited counterparts because solvents used for subsequent charge transport layers often damage the underlying emissive layer. Herein, we find that when fabricating the electron transport layer (ETL) on sky-blue quasi-2D perovskite films using solution processing, even nonpolar solvents degrade luminescence properties and surface morphology, primarily due to the loss of organic ligands and additives. To overcome this challenge, we develop a supramolecular host-guest complexation strategy that predissolves these organic components in nonpolar solvents and incorporates them directly into the ETL processing sequence. Using this method, we achieve a sky-blue PeLED with an external quantum efficiency of 14.75% and a maximum luminance of 8740 cd m-2. This work provides a versatile and promising route to high-performance, all-solution-processed PeLEDs.
全溶液处理的钙钛矿光电器件有望实现可扩展、可持续制造,但其性能仍不如真空沉积的同类器件,因为用于后续电荷传输层的溶剂通常会损坏底层发射层。本文中,我们发现在天蓝准二维钙钛矿薄膜上使用溶液工艺制备电子传输层(ETL)时,即使是非极性溶剂也会降低发光性能和表面形貌,这主要是由于有机配体和添加剂的损失。为了克服这一挑战,我们开发了一种超分子主客体络合策略,将这些有机成分预先溶解在非极性溶剂中,并将其直接纳入ETL处理序列。利用这种方法,我们实现了外量子效率为14.75%,最大亮度为8740 cd - m-2的天蓝色PeLED。这项工作为高性能、全溶液处理的ped提供了一条多功能和有前途的途径。
{"title":"All-Solution-Processed Sky-Blue Perovskite Electroluminescence Device via Integrated Supramolecular Host-Guest Post-Treatment.","authors":"Naizhong Jiang, Zhibin Wang, Song Zheng, Zhehong Zhou, Ruidan Zhang, Lingwei Zeng, Feng Huang, Daqin Chen","doi":"10.1021/acs.nanolett.5c06313","DOIUrl":"https://doi.org/10.1021/acs.nanolett.5c06313","url":null,"abstract":"<p><p>All-solution-processed perovskite optoelectronic devices are promising for scalable, sustainable manufacturing, yet their performance remains inferior to vacuum-deposited counterparts because solvents used for subsequent charge transport layers often damage the underlying emissive layer. Herein, we find that when fabricating the electron transport layer (ETL) on sky-blue quasi-2D perovskite films using solution processing, even nonpolar solvents degrade luminescence properties and surface morphology, primarily due to the loss of organic ligands and additives. To overcome this challenge, we develop a supramolecular host-guest complexation strategy that predissolves these organic components in nonpolar solvents and incorporates them directly into the ETL processing sequence. Using this method, we achieve a sky-blue PeLED with an external quantum efficiency of 14.75% and a maximum luminance of 8740 cd m<sup>-2</sup>. This work provides a versatile and promising route to high-performance, all-solution-processed PeLEDs.</p>","PeriodicalId":53,"journal":{"name":"Nano Letters","volume":" ","pages":""},"PeriodicalIF":9.1,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146148560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}