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End Plate Chondrocyte-Derived Exosomal miR-133a-3p Alleviates Intervertebral Disc Degeneration by Targeting the NF-κB Signaling Pathway through the miR-133a-3p/MAML1 Axis.
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 DOI: 10.1021/acs.molpharmaceut.4c00962
Qiuwei Li, Ruocheng Guo, Chenhao Zhao, Xuewu Chen, Hong Wang, Cailiang Shen

Chondrocyte-derived exosomes have shown efficacy in differentiating osteoarthritis-affected cartilage. Intervertebral disc degeneration (IVDD) and osteoarthritis often affect facet joints of the spine and show common epidemiological and pathophysiological characteristics. However, the potential of chondrocyte-derived exosomes for treating IVDD remains unclear. The present study aimed to confirm the effect of end plate chondrocyte-derived exosomes (EPC-Exo) on IVDD and elucidate the underlying mechanism. EPC-Exos were isolated and identified by ultracentrifugation, Western blotting, electron microscopy, and nanoparticle tracking analysis. In the in vitro, EPC-Exo uptake by nucleus pulposus (NP) cells reduced cell death by blocking the nuclear factor-κB (NF-κB) signaling pathway. In the in vivo study, EPC-Exos injected into rat intervertebral discs mitigated lipopolysaccharide-induced IVDD, as revealed by a decreased loss of disc height and improved magnetic resonance imaging findings and histological scores. Bioinformatics and sequencing analyses indicated that EPC-Exos alleviated IVDD through the miR-133a-3p/MAML1 axis. The present study suggests that EPC-Exos reduced IVDD incidence via the miR-133a-3p/MAML1 axis-mediated suppression of NF-κB signaling, which prevented the pyroptosis of NP cells.

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引用次数: 0
Comparison of a Series of 68Ga-Labeled DOTA-LLP2A Conjugates for Positron Emission Tomography Imaging of Very Late Antigen-4 in Melanoma. 一系列68ga标记的DOTA-LLP2A偶联物用于黑色素瘤极晚期抗原-4正电子发射断层成像的比较
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-03 DOI: 10.1021/acs.molpharmaceut.4c01204
Peng Zhou, Yujing Wu, Guoqing Han, Juntao Jiang, Hongyong Wang, Chunxiong Lu, Yaling Liu, Jun Wu, Pei Zou, Hao Wu

Melanoma, with its steadily rising global incidence, is characterized by high invasiveness, leading to poor prognosis in advanced stages. There remains an unmet clinical need for the development of radiolabeled PET imaging probes for the early diagnosis of melanoma. Integrin VLA-4, a key factor in melanoma metastasis, presents a promising protein target to address the specificity shortcomings of existing probes in melanoma imaging. This study evaluates 68Ga-labeled DOTA-LLP2A PET probes for melanoma imaging by modifying different carboxyl sites and employing various polyethylene glycol (PEG) linkers based on the structure of the high-affinity ligand LLP2A for VLA-4. The ligand intermediates LLP2A-NH2 and LLP2A(tBu)-OH, as well as their conjugates (probe precursors), were synthesized via solid-phase synthesis. The specificity and cytotoxicity of the probes were assessed in VLA-4-positive B16F10 cells and VLA-4-negative A375 cells. Targeting efficacy of the probes in B16F10 and A375 xenograft models was compared through PET imaging and biodistribution studies. VLA-4 expression in tissues was evaluated via immunofluorescence, while H&E staining was employed to assess the safety profile of the probes. The probe ([68Ga]Ga-T-CH) modified at the Aminocyclohexane carboxylic acid (Ach) exhibited greater signal accumulation in B16F10 melanoma (3.90 ± 0.43%ID/g at 1 h) compared to the 2-aminoadipic acid (Aad) side-chain-modified probe ([68Ga]Ga-T-AD) (1.43 ± 0.23%ID/g at 1 h). PET images of the three PEG conjugates derived from the Ach demonstrated bright tumor signals and low background noise, showing a progressive increase in tumor signal intensity from [68Ga]Ga-T6 to [68Ga]Ga-T4 and [68Ga]Ga-T2. Tumor uptake, tumor-to-muscle ratio, and tumor-to-blood ratio from biodistribution were significantly higher for [68Ga]Ga-T2 than for [68Ga]Ga-T4 and [68Ga]Ga-T6 (tumor: 3.58 ± 0.28 vs 2.90 ± 0.16 vs 1.87 ± 0.22%ID/g at 1 h; tumor/muscle: 13.38 ± 0.43 vs 10.62 ± 0.70 vs 7.19 ± 1.15 at 1 h; tumor/blood: 8.64 ± 1.12 vs 5.32 ± 0.91 vs 4.36 ± 0.59 at 1 h; P < 0.05). These data suggest that the series of PEG derivatives [68Ga]Ga-T2, [68Ga]Ga-T4, and [68Ga]Ga-T6, linked at the Ach site, are excellent 68Ga-labeled probes for melanoma and other potential VLA-4-positive tumors. Among them, [68Ga]Ga-T2 shows the highest tumor-to-background contrast for melanoma, positioning it as the most promising candidate for clinical translation.

黑色素瘤的全球发病率稳步上升,其特点是高侵袭性,导致晚期预后差。在黑素瘤的早期诊断中,放射标记PET成像探针的发展仍然是一个未满足的临床需求。整合素VLA-4是黑色素瘤转移的关键因子,有望解决现有黑色素瘤成像探针特异性不足的问题。本研究通过修改不同的羧基位点,并基于对vla4的高亲和力配体LLP2A的结构,使用各种聚乙二醇(PEG)连接剂,评估68ga标记的DOTA-LLP2A PET探针对黑色素瘤成像的影响。采用固相法合成了配体中间体LLP2A- nh2和LLP2A(tBu)-OH及其共轭物(探针前体)。在vla -4阳性的B16F10细胞和vla -4阴性的A375细胞中评估探针的特异性和细胞毒性。通过PET显像和生物分布研究比较探针在B16F10和A375异种移植物模型中的靶向效果。免疫荧光法检测组织中vla4的表达,H&E染色法检测探针的安全性。与2-氨基己二酸(Aad)侧链修饰探针([68Ga]Ga-T-AD)(1.43±0.23%ID/g, 1 h)相比,经氨基环己烷羧酸(Ach)修饰的探针([68Ga]Ga-T-CH)在B16F10黑色素瘤中的信号积累更大(3.90±0.43%ID/g)。由Ach衍生的三种PEG偶联物的PET图像显示肿瘤信号清晰,背景噪声低,肿瘤信号强度从[68Ga]Ga-T6逐渐增加到[68Ga]Ga-T4和[68Ga]Ga-T2。从生物分布来看,[68Ga]Ga-T2组的肿瘤摄取、瘤肌比和瘤血比均显著高于[68Ga]Ga-T4和[68Ga]Ga-T6组(1 h肿瘤:3.58±0.28 vs 2.90±0.16 vs 1.87±0.22%ID/g;肿瘤/肌肉:1小时13.38±0.43 vs 10.62±0.70 vs 7.19±1.15;肿瘤/血:1 h 8.64±1.12 vs 5.32±0.91 vs 4.36±0.59;P < 0.05)。这些数据表明,在Ach位点连接的PEG衍生物[68Ga]Ga-T2、[68Ga]Ga-T4和[68Ga]Ga-T6系列是黑色素瘤和其他潜在的vla -4阳性肿瘤的优秀68Ga标记探针。其中,[68Ga]Ga-T2在黑色素瘤中显示出最高的肿瘤-背景对比度,是最有希望用于临床转化的候选者。
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引用次数: 0
Development of Pluronic-Based Micelles from Palm Oil Bioactive Compounds Incorporated by a Dissolvable Microarray Patch to Enhance the Efficacy of Atopic Dermatitis Therapy. 可溶微阵列贴片结合棕榈油生物活性化合物制备pluronic胶束以提高特应性皮炎的疗效。
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-13 DOI: 10.1021/acs.molpharmaceut.4c00990
Khusnul Humayatul Jannah, Christopher Kosasi Ko, Felicia Virginia Thios, Jihan Nabilah Isma, Anugerah Yaumil Ramadhani Aziz, Andi Dian Permana

The high content of vitamin E, including tocopherols and tocotrienols (TCF-TTE), in palm oil (Elaeis guineensis) has made it a promising candidate for the alternative treatment of atopic dermatitis (AD). However, the limited solubility of TCF-TTE has restricted its therapeutic efficacy. In this study, pluronic-based micelles (MCs) encapsulating palm oil-derived TCF-TTE were formulated with dissolvable microarray patch-micelles (DMP-MC) using carboxymethyl cellulose (CMC) synthesized from empty fruit bunches of palm to optimize its delivery for AD. The MC was prepared using a direct dissolution method using Pluronic F68 and F127. The results showed that MC increased the solubility of TCF-TTE, which was further confirmed by an in vitro study where 90.23 ± 2.07% TCF and 4.56 ± 1.36% TTE were released compared to the unencapsulated TCF-TTE extract. Furthermore, CMC biopolymers and MC integrated into DMP-MC with polyvinylpyrrolidone (PVP) exhibited favorable physical properties, such as mechanical strength and penetration ability. DMP-MC also exhibited a better platform with lower permeation, indicating higher retention and increased localized effects on AD skin than cream-MC. Additionally, dermatokinetic profile parameters showed significant improvement. The mean residence time (MRT) parameter indicated that TCF-TTE was retained for longer times 19.28 ± 0.02 h and 20.68 ± 0.01 h. Moreover, an in vivo study revealed that DMP-MC could relieve AD symptoms more rapidly than oral doses and cream-MC, indicating that DMP-MC proved to be more efficient. Furthermore, DMP-MC showed no tissue destruction (granulation and fibrosis) in rats treated with DMP-MC on the seventh day. Therefore, this study successfully developed the MC formula in DMP-MC formulation using synthesized CMC, which could potentially improve AD's therapeutic efficacy.

棕榈油(Elaeis guineensis)中维生素E的高含量,包括生育酚和生育三烯醇(TCF-TTE),使其成为特应性皮炎(AD)替代治疗的有希望的候选者。然而,TCF-TTE的溶解度有限,限制了其治疗效果。本研究利用棕榈空果束合成的羧甲基纤维素(CMC)制备了可溶解微阵列贴片胶束(DMP-MC),以优化其对AD的递送。采用Pluronic F68和F127直接溶出法制备MC。结果表明,MC提高了TCF-TTE的溶解度,与未包封的TCF-TTE提取物相比,体外释放TCF为90.23±2.07%,TTE为4.56±1.36%,进一步证实了这一点。此外,CMC生物聚合物和MC与聚乙烯吡罗烷酮(PVP)集成在DMP-MC中,表现出良好的物理性能,如机械强度和穿透能力。DMP-MC也表现出更好的平台,渗透性较低,表明与乳霜- mc相比,DMP-MC具有更高的保留率和更强的局部作用。此外,皮肤动力学参数也有显著改善。平均滞留时间(MRT)参数显示TCF-TTE滞留时间较长(19.28±0.02 h)和(20.68±0.01 h)。此外,体内研究显示,DMP-MC比口服剂量和乳霜- mc能更快地缓解AD症状,表明DMP-MC更有效。此外,DMP-MC治疗第7天大鼠未出现组织破坏(肉芽肿和纤维化)。因此,本研究利用合成CMC成功开发了DMP-MC配方中的MC配方,有望提高AD的治疗效果。
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引用次数: 0
ALC-0315 Lipid-Based mRNA LNP Induces Stronger Cellular Immune Responses Postvaccination. ALC-0315基于脂质的mRNA LNP诱导接种后更强的细胞免疫应答
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-15 DOI: 10.1021/acs.molpharmaceut.4c00995
Zuchen Song, Lan Jin, Lina Jiao, Ruihong Yu, Huina Liu, Shun Zhang, Yaoren Hu, Yuechao Sun, Entao Li, Guofang Zhao, Zhenguang Liu, Ting Cai

At the end of 2019, SARS-CoV-2 emerged and rapidly spread, having a profound negative impact on human health and socioeconomic conditions. In response to this unprecedented global health crisis, significant advancements were made in the mRNA vaccine technology. In this study, we have compared the difference between two SARS-CoV-2 receptor-binding domain (RBD) mRNA-Lipid nanoparticle (LNP) vaccines prepared from two different ionizable cationic lipids: ALC-0315 and MC3. Characterization of RBD mRNA-LNPs showed that both MC3-LNP and ALC-0315-LNP are highly uniform and stable. Furthermore, we assessed the humoral immune response in mice after immunization; our findings indicated that both vaccine formulations effectively enhanced the formation and differentiation of germinal center (GC). Notably, the mice immunized with the ALC-0315-LNP vaccine elicited higher levels of IgG and its subclasses and significantly enhanced the activation of dendritic cells and T cells in draining lymph nodes (dLNs) compared to those immunized with the MC3-LNP vaccine. Further analysis of the T cell phenotype after splenic restimulation showed that mice injected with both LNP mRNA vaccines had significantly increased activation of the splenic T cells and Th1-type cytokine production. In addition, our finding showed that both LNP mRNA vaccines significantly increased the proportions of follicular helper T cells (Tfh) and long-lasting plasma cells in the dLNs of mice on day 14 postimmunization compared to control. In conclusion, both ALC-0315 and MC3 exhibited good stability and immunogenicity as mRNA-LNP recipes, but the ALC-0315-based mRNA-LNP vaccine showed higher efficacy in humoral and cellular immune responses compared to MC3.

2019年底,SARS-CoV-2出现并迅速传播,对人类健康和社会经济状况产生了深远的负面影响。为应对这一前所未有的全球卫生危机,mRNA疫苗技术取得了重大进展。在这项研究中,我们比较了两种SARS-CoV-2受体结合域(RBD) mrna -脂质纳米颗粒(LNP)疫苗的差异,这些疫苗是由两种不同的电离阳离子脂质ALC-0315和MC3制备的。RBD mRNA-LNPs的表征表明,MC3-LNP和ALC-0315-LNP均具有高度的均匀性和稳定性。此外,我们评估了免疫后小鼠的体液免疫反应;结果表明,两种疫苗制剂均能有效促进生发中心(GC)的形成和分化。值得注意的是,与接种MC3-LNP疫苗的小鼠相比,接种ALC-0315-LNP疫苗的小鼠产生了更高水平的IgG及其亚类,并显著增强了引流淋巴结(dln)中树突状细胞和T细胞的活化。进一步分析脾脏再刺激后的T细胞表型显示,注射两种LNP mRNA疫苗的小鼠脾脏T细胞活化和th1型细胞因子的产生显著增加。此外,我们的研究结果表明,与对照组相比,LNP mRNA疫苗在刺激后第14天显著增加了小鼠dln中滤泡辅助性T细胞(Tfh)和持久浆细胞的比例。综上所述,作为mRNA-LNP配方,ALC-0315和MC3均具有良好的稳定性和免疫原性,但基于ALC-0315的mRNA-LNP疫苗在体液和细胞免疫应答中表现出比MC3更高的效果。
{"title":"ALC-0315 Lipid-Based mRNA LNP Induces Stronger Cellular Immune Responses Postvaccination.","authors":"Zuchen Song, Lan Jin, Lina Jiao, Ruihong Yu, Huina Liu, Shun Zhang, Yaoren Hu, Yuechao Sun, Entao Li, Guofang Zhao, Zhenguang Liu, Ting Cai","doi":"10.1021/acs.molpharmaceut.4c00995","DOIUrl":"10.1021/acs.molpharmaceut.4c00995","url":null,"abstract":"<p><p>At the end of 2019, SARS-CoV-2 emerged and rapidly spread, having a profound negative impact on human health and socioeconomic conditions. In response to this unprecedented global health crisis, significant advancements were made in the mRNA vaccine technology. In this study, we have compared the difference between two SARS-CoV-2 receptor-binding domain (RBD) mRNA-Lipid nanoparticle (LNP) vaccines prepared from two different ionizable cationic lipids: ALC-0315 and MC3. Characterization of RBD mRNA-LNPs showed that both MC3-LNP and ALC-0315-LNP are highly uniform and stable. Furthermore, we assessed the humoral immune response in mice after immunization; our findings indicated that both vaccine formulations effectively enhanced the formation and differentiation of germinal center (GC). Notably, the mice immunized with the ALC-0315-LNP vaccine elicited higher levels of IgG and its subclasses and significantly enhanced the activation of dendritic cells and T cells in draining lymph nodes (dLNs) compared to those immunized with the MC3-LNP vaccine. Further analysis of the T cell phenotype after splenic restimulation showed that mice injected with both LNP mRNA vaccines had significantly increased activation of the splenic T cells and Th1-type cytokine production. In addition, our finding showed that both LNP mRNA vaccines significantly increased the proportions of follicular helper T cells (Tfh) and long-lasting plasma cells in the dLNs of mice on day 14 postimmunization compared to control. In conclusion, both ALC-0315 and MC3 exhibited good stability and immunogenicity as mRNA-LNP recipes, but the ALC-0315-based mRNA-LNP vaccine showed higher efficacy in humoral and cellular immune responses compared to MC3.</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":"859-870"},"PeriodicalIF":4.5,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142996290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characterization of Rationally Designed CRISPR/Cas9-Based DNA Methyltransferases with Distinct Methyltransferase and Gene Silencing Activities in Human Cell Lines and Primary Human T Cells.
IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-03 DOI: 10.1021/acssynbio.4c00569
Rosa Selenia Guerra-Resendez, Samantha LeGoff Lydon, Alex J Ma, Guy C Bedford, Daniel R Reed, Sunghwan Kim, Erik R Terán, Tomoki Nishiguchi, Mario Escobar, Andrew R DiNardo, Isaac B Hilton

Nuclease-deactivated Cas (dCas) proteins can be used to recruit epigenetic effectors, and this class of epigenetic editing technologies has revolutionized the ability to synthetically control the mammalian epigenome and transcriptome. DNA methylation is one of the most important and well-characterized epigenetic modifications in mammals, and while many different forms of dCas-based DNA methyltransferases (dCas-DNMTs) have been developed for programmable DNA methylation, these tools are frequently poorly tolerated and/or lowly expressed in mammalian cell types. Further, the use of dCas-DNMTs has largely been restricted to cell lines, which limits mechanistic insights in karyotypically normal contexts and hampers translational utility in the longer term. Here, we extend previous insights into the rational design of the catalytic core of the mammalian DNMT3A methyltransferase and test three dCas9-DNMT3A/3L variants across different human cell lines and in primary donor-derived human T cells. We find that mutations within the catalytic core of DNMT3A stabilize the expression of dCas9-DNMT3A/3L fusion proteins in Jurkat T cells without sacrificing DNA methylation or gene-silencing performance. We also show that these rationally engineered mutations in DNMT3A alter DNA methylation profiles at loci targeted with dCas9-DNMT3A/3L in cell lines and donor-derived human T cells. Finally, we leverage the transcriptionally repressive effects of dCas9-DNMT3A/3L variants to functionally link the expression of a key immunomodulatory transcription factor to cytokine secretion in donor-derived T cells. Overall, our work expands the synthetic biology toolkit for epigenetic editing and provides a roadmap for the use of engineered dCas-based DNMTs in primary mammalian cell types.

{"title":"Characterization of Rationally Designed CRISPR/Cas9-Based DNA Methyltransferases with Distinct Methyltransferase and Gene Silencing Activities in Human Cell Lines and Primary Human T Cells.","authors":"Rosa Selenia Guerra-Resendez, Samantha LeGoff Lydon, Alex J Ma, Guy C Bedford, Daniel R Reed, Sunghwan Kim, Erik R Terán, Tomoki Nishiguchi, Mario Escobar, Andrew R DiNardo, Isaac B Hilton","doi":"10.1021/acssynbio.4c00569","DOIUrl":"https://doi.org/10.1021/acssynbio.4c00569","url":null,"abstract":"<p><p>Nuclease-deactivated Cas (dCas) proteins can be used to recruit epigenetic effectors, and this class of epigenetic editing technologies has revolutionized the ability to synthetically control the mammalian epigenome and transcriptome. DNA methylation is one of the most important and well-characterized epigenetic modifications in mammals, and while many different forms of dCas-based DNA methyltransferases (dCas-DNMTs) have been developed for programmable DNA methylation, these tools are frequently poorly tolerated and/or lowly expressed in mammalian cell types. Further, the use of dCas-DNMTs has largely been restricted to cell lines, which limits mechanistic insights in karyotypically normal contexts and hampers translational utility in the longer term. Here, we extend previous insights into the rational design of the catalytic core of the mammalian DNMT3A methyltransferase and test three dCas9-DNMT3A/3L variants across different human cell lines and in primary donor-derived human T cells. We find that mutations within the catalytic core of DNMT3A stabilize the expression of dCas9-DNMT3A/3L fusion proteins in Jurkat T cells without sacrificing DNA methylation or gene-silencing performance. We also show that these rationally engineered mutations in DNMT3A alter DNA methylation profiles at loci targeted with dCas9-DNMT3A/3L in cell lines and donor-derived human T cells. Finally, we leverage the transcriptionally repressive effects of dCas9-DNMT3A/3L variants to functionally link the expression of a key immunomodulatory transcription factor to cytokine secretion in donor-derived T cells. Overall, our work expands the synthetic biology toolkit for epigenetic editing and provides a roadmap for the use of engineered dCas-based DNMTs in primary mammalian cell types.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Harnessing Non-standard Nucleic Acids for Highly Sensitive Icosaplex (20-Plex) Detection of Microbial Threats for Environmental Surveillance.
IF 3.7 2区 生物学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-02-03 DOI: 10.1021/acssynbio.4c00619
Hinako Kawabe, Luran Manfio, Sebastian Magana Pena, Nicolette A Zhou, Kevin M Bradley, Cen Chen, Chris McLendon, Steven A Benner, Karen Levy, Zunyi Yang, Jorge A Marchand, Erica R Fuhrmeister

Environmental surveillance and clinical diagnostics heavily rely on the polymerase chain reaction (PCR) for target detection. A growing list of microbial threats warrants new PCR-based detection methods that are highly sensitive, specific, and multiplexable. Here, we introduce a PCR-based icosaplex (20-plex) assay for detecting 18 enteropathogen and two antimicrobial resistance genes. This multiplexed PCR assay leverages the self-avoiding molecular recognition system (SAMRS) to avoid primer dimer formation, the artificially expanded genetic information system (AEGIS) for amplification specificity, and next-generation sequencing for amplicon identification. Using parallelized multitarget TaqMan Array Cards (TAC) to benchmark performance of the 20-plex assay on wastewater, soil, and human stool samples, we found 90% agreement on positive calls and 89% agreement on negative calls. Additionally, we show how long-read and short-read sequencing information from the 20-plex can be used to further classify allelic variants of genes and distinguish subspecies. The strategy presented offers sensitive, affordable, and robust multiplex detection that can be used to support efforts in wastewater-based epidemiology, environmental monitoring, and human/animal diagnostics.

{"title":"Harnessing Non-standard Nucleic Acids for Highly Sensitive Icosaplex (20-Plex) Detection of Microbial Threats for Environmental Surveillance.","authors":"Hinako Kawabe, Luran Manfio, Sebastian Magana Pena, Nicolette A Zhou, Kevin M Bradley, Cen Chen, Chris McLendon, Steven A Benner, Karen Levy, Zunyi Yang, Jorge A Marchand, Erica R Fuhrmeister","doi":"10.1021/acssynbio.4c00619","DOIUrl":"https://doi.org/10.1021/acssynbio.4c00619","url":null,"abstract":"<p><p>Environmental surveillance and clinical diagnostics heavily rely on the polymerase chain reaction (PCR) for target detection. A growing list of microbial threats warrants new PCR-based detection methods that are highly sensitive, specific, and multiplexable. Here, we introduce a PCR-based icosaplex (20-plex) assay for detecting 18 enteropathogen and two antimicrobial resistance genes. This multiplexed PCR assay leverages the self-avoiding molecular recognition system (SAMRS) to avoid primer dimer formation, the artificially expanded genetic information system (AEGIS) for amplification specificity, and next-generation sequencing for amplicon identification. Using parallelized multitarget TaqMan Array Cards (TAC) to benchmark performance of the 20-plex assay on wastewater, soil, and human stool samples, we found 90% agreement on positive calls and 89% agreement on negative calls. Additionally, we show how long-read and short-read sequencing information from the 20-plex can be used to further classify allelic variants of genes and distinguish subspecies. The strategy presented offers sensitive, affordable, and robust multiplex detection that can be used to support efforts in wastewater-based epidemiology, environmental monitoring, and human/animal diagnostics.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143078035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bactericidal Metal-Organic Gallium Frameworks - Synthesis to Application. 杀菌金属-有机镓骨架-合成与应用。
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2024-12-27 DOI: 10.1021/acs.molpharmaceut.4c01253
Fellype Diorgennes Cordeiro Gomes, Mary Cristina Ferreira Alves, Severino Alves Júnior, Scott H Medina

Gallium, a trace metal not found in its elemental form in nature, has garnered significant interest as a biocide, given its ability to interfere with iron metabolism in bacteria. Consequently, several gallium compounds have been developed and studied for their antimicrobial properties but face challenges of poor solubility and formulation for delivery. Organizing the metal into three-dimensional, hybrid scaffolds, termed metal-organic frameworks (MOFs), is an emerging platform with potential to address many of these limitations. Gallium MOFs show improved solubility and antibacterial potency relative to the free metal due to their ability to coload antibiotics and functional biomolecules. Synthetic strategies are equally versatile, with several rapid, cost-effective, and scalable methods available. In this review, we present the advantages and disadvantages of these various synthetic strategies with respect to their antibacterial efficiency, product purity, and reaction control. The activity of gallium-based MOFs against Gram-positive and Gram-negative pathogens in mono- and combinatorial therapeutic settings is discussed in the context of their mechanisms of action and structure-function-performance relationships collated from recent studies. While gallium MOF development as antibacterials is still in its nascent stages, the examples discussed here highlight their potential as a novel class of therapeutics poised to impact the fight against pan-drug-resistant bacterial pathogens.

镓是一种在自然界中不以元素形式存在的微量金属,由于能够干扰细菌中的铁代谢,它作为一种杀菌剂引起了人们极大的兴趣。因此,已经开发和研究了几种镓化合物的抗菌性能,但面临溶解度差和递送配方的挑战。将金属组织成三维混合支架,称为金属有机框架(mof),是一种新兴的平台,具有解决许多这些限制的潜力。与游离金属相比,镓MOFs具有更好的溶解度和抗菌效力,因为它们能够装载抗生素和功能性生物分子。综合策略同样通用,有几种快速、经济、可扩展的方法可用。本文综述了各种合成策略在抗菌效率、产物纯度和反应控制等方面的优缺点。镓基MOFs在单一和组合治疗环境中对革兰氏阳性和革兰氏阴性病原体的活性在其作用机制和结构-功能-性能关系的背景下进行了讨论。虽然镓MOF作为抗菌剂的发展仍处于起步阶段,但本文讨论的例子突出了它们作为一类新型治疗药物的潜力,有望影响对抗泛耐药细菌病原体的斗争。
{"title":"Bactericidal Metal-Organic Gallium Frameworks - Synthesis to Application.","authors":"Fellype Diorgennes Cordeiro Gomes, Mary Cristina Ferreira Alves, Severino Alves Júnior, Scott H Medina","doi":"10.1021/acs.molpharmaceut.4c01253","DOIUrl":"10.1021/acs.molpharmaceut.4c01253","url":null,"abstract":"<p><p>Gallium, a trace metal not found in its elemental form in nature, has garnered significant interest as a biocide, given its ability to interfere with iron metabolism in bacteria. Consequently, several gallium compounds have been developed and studied for their antimicrobial properties but face challenges of poor solubility and formulation for delivery. Organizing the metal into three-dimensional, hybrid scaffolds, termed metal-organic frameworks (MOFs), is an emerging platform with potential to address many of these limitations. Gallium MOFs show improved solubility and antibacterial potency relative to the free metal due to their ability to coload antibiotics and functional biomolecules. Synthetic strategies are equally versatile, with several rapid, cost-effective, and scalable methods available. In this review, we present the advantages and disadvantages of these various synthetic strategies with respect to their antibacterial efficiency, product purity, and reaction control. The activity of gallium-based MOFs against Gram-positive and Gram-negative pathogens in mono- and combinatorial therapeutic settings is discussed in the context of their mechanisms of action and structure-function-performance relationships collated from recent studies. While gallium MOF development as antibacterials is still in its nascent stages, the examples discussed here highlight their potential as a novel class of therapeutics poised to impact the fight against pan-drug-resistant bacterial pathogens.</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":"638-646"},"PeriodicalIF":4.5,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142890691","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Aqueous Solubility of Sodium and Chloride Salts of Glycine─"Uncommon" Common-Ion Effects of Self-Titrating Solids. 甘氨酸钠和氯盐的水溶性──自滴定固体的“不常见”共离子效应。
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-04 DOI: 10.1021/acs.molpharmaceut.4c01066
Alex Avdeef, Abu T M Serajuddin, Hari P Kandagatla

Although glycine is the simplest of the amino acids, its solution and solid-state properties are far from straightforward. The aqueous solubility of glycine plays an important role in various applications, including nutrition, food products, biodegradable plastics, and drug development. There is evidence that glycine in subsaturated pH 3-8 solutions forms a dimer, as suggested by several techniques. However, what takes place below pH 3 and above pH 8 in saturated solutions has been sparsely explored and is thought to exhibit complex properties. Although the solubility measurements in the pH 0-13 range have been reported by several groups, the interlaboratory variance between the data below pH 3 and above pH 8 has been high. In a couple of cases, there appears to be no pH dependence on solubility across the wide pH range, even though the reported glycine pKa values are 2.34 and 9.61. The solubility of the salt forms of glycine is largely uncharacterized. The solubility products of the simplest salts, glycine hydrochloride and sodium glycinate, appear not to have been published. In this study, five series of precision solubility measurements of glycine and its salts were performed at 25 °C, covering the range of pH -0.4 to 12.4, where in each case, just enough glycine was added to reach saturation. We have developed an equilibrium model to rationalize the complicated salt regions. Elemental analysis of isolated solids from saturated solutions supports the speciation model. At least three different salt forms have been indicated in acidic solutions and one salt form in alkaline solutions. Solubility products are reported here. The presence of a water-soluble cationic dimer is also proposed. Data analysis was performed with the aid of the pDISOL-X computer program. Activity corrections based on the Stokes-Robinson hydration theory have been implemented in saturated solutions with ionic strength in some cases exceeding 5 M. Although salt solubility is not a constant, since it depends on two independently controlled reactant concentrations, the salt solubility product is commonly expected to be a constant. However, in the glycine salt region below pH 3, our solubility measurements demonstrate that the solubility products depend on the total amount of added glycine in a saturated solution. We view this as an "uncommon" common-ion effect.

虽然甘氨酸是最简单的氨基酸,但它的溶液和固态性质远不是直截了当的。甘氨酸的水溶性在各种应用中发挥着重要作用,包括营养,食品,生物降解塑料和药物开发。有证据表明,甘氨酸在亚饱和pH 3-8溶液中形成二聚体,正如几种技术所建议的那样。然而,在pH值低于3和高于pH值8的饱和溶液中发生的情况已经很少被探索,并且被认为表现出复杂的性质。虽然有几个小组报道了pH 0-13范围内的溶解度测量,但在pH 3以下和pH 8以上的数据之间的实验室间差异很大。在一些情况下,即使报道的甘氨酸pKa值为2.34和9.61,在广泛的pH范围内,似乎没有pH对溶解度的依赖。甘氨酸盐形式的溶解度在很大程度上是未知的。最简单的盐类甘氨酸盐酸盐和甘氨酸钠的溶解度产物似乎尚未发表。在本研究中,在25°C下,在pH -0.4到12.4的范围内,对甘氨酸及其盐进行了5个系列的精确溶解度测量,在每种情况下,加入足够的甘氨酸达到饱和。我们建立了一个平衡模型来合理化复杂的盐区。从饱和溶液中分离固体的元素分析支持物种形成模型。在酸性溶液中至少有三种不同的盐形式,在碱性溶液中有一种盐形式。溶解度产物报告在这里。还提出了水溶性阳离子二聚体的存在。通过pDISOL-X计算机程序进行数据分析。基于Stokes-Robinson水合理论的活度修正已经在饱和溶液中实现,在某些情况下离子强度超过5 m。尽管盐的溶解度不是恒定的,因为它取决于两个独立控制的反应物浓度,盐的溶解度产物通常被认为是恒定的。然而,在pH值低于3的甘氨酸盐区域,我们的溶解度测量表明,溶解度产物取决于在饱和溶液中添加的甘氨酸的总量。我们认为这是一种“不寻常的”共同效应。
{"title":"Aqueous Solubility of Sodium and Chloride Salts of Glycine─\"Uncommon\" Common-Ion Effects of Self-Titrating Solids.","authors":"Alex Avdeef, Abu T M Serajuddin, Hari P Kandagatla","doi":"10.1021/acs.molpharmaceut.4c01066","DOIUrl":"10.1021/acs.molpharmaceut.4c01066","url":null,"abstract":"<p><p>Although glycine is the simplest of the amino acids, its solution and solid-state properties are far from straightforward. The aqueous solubility of glycine plays an important role in various applications, including nutrition, food products, biodegradable plastics, and drug development. There is evidence that glycine in subsaturated pH 3-8 solutions forms a dimer, as suggested by several techniques. However, what takes place below pH 3 and above pH 8 in saturated solutions has been sparsely explored and is thought to exhibit complex properties. Although the solubility measurements in the pH 0-13 range have been reported by several groups, the interlaboratory variance between the data below pH 3 and above pH 8 has been high. In a couple of cases, there appears to be no pH dependence on solubility across the wide pH range, even though the reported glycine p<i>K</i><sub>a</sub> values are 2.34 and 9.61. The solubility of the salt forms of glycine is largely uncharacterized. The solubility products of the simplest salts, glycine hydrochloride and sodium glycinate, appear not to have been published. In this study, five series of precision solubility measurements of glycine and its salts were performed at 25 °C, covering the range of pH -0.4 to 12.4, where in each case, just enough glycine was added to reach saturation. We have developed an equilibrium model to rationalize the complicated salt regions. Elemental analysis of isolated solids from saturated solutions supports the speciation model. At least three different salt forms have been indicated in acidic solutions and one salt form in alkaline solutions. Solubility products are reported here. The presence of a water-soluble cationic dimer is also proposed. Data analysis was performed with the aid of the <i>p</i>DISOL-X computer program. Activity corrections based on the Stokes-Robinson hydration theory have been implemented in saturated solutions with ionic strength in some cases exceeding 5 M. Although salt solubility is not a constant, since it depends on two independently controlled reactant concentrations, the salt solubility product is commonly expected to be a constant. However, in the glycine salt region below pH 3, our solubility measurements demonstrate that the solubility products depend on the total amount of added glycine in a saturated solution. We view this as an \"uncommon\" common-ion effect.</p>","PeriodicalId":52,"journal":{"name":"Molecular Pharmaceutics","volume":" ","pages":"895-905"},"PeriodicalIF":4.5,"publicationDate":"2025-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142925828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhancing Antituberculosis Treatment Nanoparticles Encapsulated with Catalase and Levofloxacin Under Ultrasound Stimulation: A 3D Spheroid Study. 超声刺激下过氧化氢酶和左氧氟沙星包封纳米颗粒增强抗结核治疗:三维球体研究。
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-07 DOI: 10.1021/acs.molpharmaceut.4c00748
Jiajun Guo, Yan Qiu, Can Hu, Yuchao Cao, Dairong Li, Yonghong Du

Tuberculosis (TB) is a chronic infectious disease caused by Mycobacterium tuberculosis (MTB). Tuberculous granuloma is the central and key pathological structure of tuberculosis and is characterized by tissue hypoxia and ineffective drug delivery. To address these issues, this study fabricated a composite nanoparticle loaded with catalase (CAT) and levofloxacin (LEV) (CAT@LEV-NPs) and then combined it with ultrasound (US) to investigate the bactericidal effect and underlying mechanisms using TB spheroids. The TB spheroids were constructed using attenuated Bacillus Calmette-Guérin (BCG) instead of MTB to facilitate operation under general experimental conditions. This study examined the physical properties and oxygen production efficiency of CAT@LEV-NPs. Subsequently, we treated TB spheroids with nanoparticles alone or in combination with US and found that ultrasound significantly increased drug permeability and activated CAT@LEV-NPs to produce a large number of reactive oxygen species (ROS). The combined treatment showed excellent antibacterial effects, resulting in more severe damage to the bacterial structure than other treatments. Additionally, the combined treatment induced a higher M1 polarization of macrophages, increased the apoptosis rate, and improved the anoxic microenvironment in TB spheroids. These factors may be closely related to the enhanced bactericidal effects of combined treatment. In conclusion, our study suggests that US combined with CAT@LEV-NPs could serve as a novel, noninvasive, safe, and effective treatment modality for intractable MTB infections.

结核病(TB)是由结核分枝杆菌(MTB)引起的慢性传染病。结核性肉芽肿是结核病的中心和关键病理结构,以组织缺氧和药物传递无效为特征。为了解决这些问题,本研究制备了负载过氧化氢酶(CAT)和左氧氟沙星(LEV) (CAT@LEV-NPs)的复合纳米颗粒,并将其与超声(US)结合,研究了TB球体的杀菌效果及其潜在机制。采用减毒的卡介苗(Bacillus calmette - gusamrin, BCG)代替MTB构建结核球体,便于在一般实验条件下操作。本研究考察了CAT@LEV-NPs的物理性质和产氧效率。随后,我们用纳米颗粒单独或联合US治疗TB球体,发现超声显著增加药物通透性并激活CAT@LEV-NPs产生大量活性氧(ROS)。联合处理具有较好的抗菌效果,对细菌结构的破坏较其他处理更为严重。此外,联合治疗可诱导巨噬细胞M1极化升高,增加细胞凋亡率,改善结核球体缺氧微环境。这些因素可能与联合治疗的杀菌效果增强密切相关。总之,我们的研究表明,US联合CAT@LEV-NPs可以作为一种新的、无创的、安全的、有效的治疗难治性结核分枝杆菌感染的方式。
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引用次数: 0
Tumor-Repopulating Cell-Derived Microparticle-Based Therapeutics Amplify the Antitumor Effect through Synergistic Inhibition of Chemoresistance and Immune Evasion. 肿瘤再生细胞衍生的基于微粒的治疗方法通过协同抑制化疗耐药和免疫逃避来增强抗肿瘤效果。
IF 4.5 2区 医学 Q2 MEDICINE, RESEARCH & EXPERIMENTAL Pub Date : 2025-02-03 Epub Date: 2025-01-08 DOI: 10.1021/acs.molpharmaceut.4c00709
Nana Bie, Shiyu Li, Qingle Liang, Wenxia Zheng, Shiyi Xu, Haojie Liu, Xiaojuan Zhang, Zhaohan Wei, Tuying Yong, Xiangliang Yang, Lu Gan

Traditional chemotherapy often encounters failure attributed to drug resistance mediated by tumor-repopulating cells (TRCs) and chemotherapy-triggered immune suppression. The effective inhibition of TRCs and the mitigation of drug-induced immune suppression are pivotal for the successful chemotherapy. Here, TRC-derived microparticles (3D-MPs), characterized by excellent tumor-targeting and high TRC uptake properties, are utilized to deliver metformin and the chemotherapeutic drug doxorubicin ((DOX+Met)@3D-MPs). (DOX+Met)@3D-MPs efficiently enhance tumor accumulation and are highly internalized in tumor cells and TRCs. Additionally, (DOX+Met)@3D-MPs significantly decrease the chemotherapy-triggered upregulation in P-glycoprotein expression to enhance intracellular doxorubicin retention, resulting in increased chemotherapy sensitivity and immunogenic cell death in tumor cells and TRCs for improved antitumor immunity. Importantly, (DOX+Met)@3D-MPs also remarkably reduce chemotherapy-induced PD-L1 expression, efficiently alleviating immune suppression facilitated by the PD-L1/PD-1 axis to further enhance immunological response against malignancy. These results underscore the (DOX+Met)@3D-MPs' potential as a viable platform for augmenting the efficacy of antitumor therapies.

由于肿瘤再生细胞(TRCs)介导的耐药性和化疗引发的免疫抑制,传统化疗经常遭遇失败。TRCs的有效抑制和药物性免疫抑制的缓解是化疗成功的关键。在这里,TRC衍生的微颗粒(3D-MPs)具有优异的肿瘤靶向性和高TRC摄取特性,用于递送二甲双胍和化疗药物阿霉素((DOX+Met)@3D-MPs)。(DOX+Met)@3D-MPs有效地促进肿瘤积累,并在肿瘤细胞和TRCs中高度内化。此外,(DOX+Met)@3D-MPs显著降低化疗引发的p糖蛋白表达上调,增强细胞内阿霉素潴留,从而增加肿瘤细胞和TRCs的化疗敏感性和免疫原性细胞死亡,从而提高抗肿瘤免疫力。重要的是,(DOX+Met)@3D-MPs还显著降低化疗诱导的PD-L1表达,有效缓解PD-L1/PD-1轴促进的免疫抑制,进一步增强对恶性肿瘤的免疫应答。这些结果强调了(DOX+Met)@3D-MPs作为增强抗肿瘤治疗效果的可行平台的潜力。
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