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Parallel Newton–Chebyshev polynomial preconditioners for the conjugate gradient method 共轭梯度法的平行牛顿-切比雪夫多项式预调节器
Q3 MATHEMATICS, APPLIED Pub Date : 2021-02-14 DOI: 10.1002/cmm4.1153
Luca Bergamaschi, Angeles Martinez Calomardo

In this note, we exploit polynomial preconditioners for the conjugate gradient method to solve large symmetric positive definite linear systems in a parallel environment. We put in connection a specialized Newton method to solve the matrix equation X−1 = A and the Chebyshev polynomials for preconditioning. We propose a simple modification of one parameter which avoids clustering of extremal eigenvalues in order to speed-up convergence. We provide results on very large matrices (up to 8.6 billion unknowns) in a parallel environment showing the efficiency of the proposed class of preconditioners.

在本文中,我们利用共轭梯度法的多项式预条件来求解并行环境下的大型对称正定线性系统。我们将求解矩阵方程X−1 = a的专用牛顿法和用于预处理的切比雪夫多项式联系起来。我们提出了一个简单的参数修改,避免了极值特征值的聚类,以加快收敛速度。我们在并行环境中提供了非常大的矩阵(高达86亿个未知数)的结果,显示了所提出的一类预调节器的效率。
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引用次数: 3
Isolated and structured families of models for stochastic symmetric matrices 随机对称矩阵的孤立和结构模型族
Q3 MATHEMATICS, APPLIED Pub Date : 2021-02-11 DOI: 10.1002/cmm4.1152
Cristina Dias, Carla Santos, João Tiago Mexia

Stochastic symmetric matrices with a dominant eigenvalue, α,can be written as the sum of λααt (where λ is the first eigenvalue), with a symmetric error matrix E. The information in the stochastic matrix will be condensed in its structured vectors, λα, and the sum of square of residues, V. When the matrices of a family correspond to the treatments of a base design, we say the family is structured. The action of the factors, which are considered in the base design, on the structure vectors of the family matrices will be analyzed. We use ANOVA (Analysis of Variance) and related techniques, to study the action under linear combinations of the components of structure vectors of the m matrices of the model. Orthogonal models with m treatments are associated to orthogonal partitions. The hypothesis to be tested, on the action of the factors in the base design, will be associated to the spaces in the orthogonal partitions. We will show how to carry out transversal and longitudinal analysis for families of stochastic symmetric matrices with dominant eigenvalue associated to orthogonal models.

具有主导特征值α的随机对称矩阵可以写成λααt(其中λ是第一个特征值)与对称误差矩阵e的和。随机矩阵中的信息将被浓缩为其结构化向量λα和残数平方和v。当一个族的矩阵对应于一个基本设计的处理时,我们说这个族是结构化的。在基础设计中考虑的因素对族矩阵结构向量的作用将被分析。我们使用方差分析(ANOVA)和相关技术,来研究模型的m矩阵的结构向量组成的线性组合下的作用。具有m个处理的正交模型与正交分区相关联。待检验的假设,即基础设计中各因素的作用,将与正交分区中的空间相关联。我们将展示如何对与正交模型相关的具有优势特征值的随机对称矩阵族进行横向和纵向分析。
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引用次数: 0
A high-order numerical method for sediment transport problems simulation and its comparison with laboratory experiments 泥沙输运问题的高阶数值模拟方法及其与室内实验的比较
Q3 MATHEMATICS, APPLIED Pub Date : 2021-02-07 DOI: 10.1002/cmm4.1151
María Teresa Capilla Romá, Angel Balaguer-Beser, Beatriz Nácher-Rodríguez, Francisco J. Vallés-Morán

This article describes a high-order well-balanced central finite volume scheme for solving the coupled Exner−shallow water equations in one dimensional channels with rectangular section and variable width. Such numerical method may solve the proposed bedload sediment transport problem without the need to diagonalize the Jacobian matrix of flow. The numerical scheme uses a Runge–Kutta method with a fourth-order continuous natural extension for time discretization. The source term approximation is designed to verify the exact conservation property. Comparison of the numerical results for two accuracy tests have proved the stability and accuracy of the scheme. The results of the laboratory tests have also been used to calibrate different expressions of the solid transport discharge in the computer code. Two experimental tests have been carried out to study the erosive phenomenon and the consequent sediment transport: one test consisting of a triangular dune, and other caused by the effect of channel contraction.

本文描述了求解矩形变宽一维通道中耦合Exner -浅水方程的一种高阶平衡中心有限体积格式。这种数值方法可以解决所提出的河床输沙问题,而不需要对角化水流的雅可比矩阵。数值格式采用四阶连续自然扩展的龙格-库塔法进行时间离散。源项近似的设计是为了验证精确的守恒性质。两次精度试验的数值结果对比证明了该方案的稳定性和准确性。实验室试验的结果也被用来校正计算机程序中固体输运流量的不同表达式。为了研究泥沙的侵蚀现象和泥沙的输运,进行了两项试验:一项是由三角形沙丘组成的试验,另一项是由河道收缩作用引起的试验。
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引用次数: 0
On the Chandrasekhar integral equation 关于钱德拉塞卡积分方程
Q3 MATHEMATICS, APPLIED Pub Date : 2021-02-02 DOI: 10.1002/cmm4.1150
Miguel A. Hernández-Verón, Eulalia Martínez, Sukhjit Singh

This study is devoted to solve the Chandrasekhar integral equation that it is used for modeling problems in theory of radiative transfer in a plane-parallel atmosphere, and others research areas like the kinetic theory of gases, neutron transport, traffic model, the queuing theory among others. First of all, we transform the Chandrasekhar integral equation into a nonlinear Hammerstein-type integral equation with the corresponding Nemystkii operator and the proper nonseparable kernel. Them, we approximate the kernel in order to apply an iterative scheme. This procedure it is solved in two different ways. First one, we solve a nonlinear equation with separable kernel and define an adequate nonlinear operator between Banach spaces that approximates the first problem. Second one, we introduce an approximation for the inverse of the Fréchet derivative that appears in the Newton's iterative scheme for solving nonlinear equations. Finally, we perform a numerical experiment in order to compare our results with previous ones published showing that are competitive.

本研究致力于求解钱德拉塞卡积分方程,该方程用于平面平行大气中辐射传输理论的建模问题,以及其他研究领域如气体动力学理论、中子输运、交通模型、排队论等。首先,我们将Chandrasekhar积分方程转化为具有相应Nemystkii算子和适当不可分核的非线性hammerstein型积分方程。对它们,我们近似核以便应用迭代方案。这个过程有两种不同的解决方法。首先,我们解了一个具有可分离核的非线性方程,并在Banach空间之间定义了一个近似于第一个问题的充分的非线性算子。第二,我们介绍了在求解非线性方程的牛顿迭代格式中出现的fr切特导数逆的近似。最后,我们进行了一个数值实验,以便将我们的结果与先前发表的具有竞争力的结果进行比较。
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引用次数: 0
A strategy to avoid ill-conditioned stars in the generalized finite difference method for solving one-dimensional problems 一维问题广义有限差分法中避免病态星形的策略
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-24 DOI: 10.1002/cmm4.1149
Augusto C. Albuquerque-Ferreira, Miguel Ureña, Higinio Ramos

In this paper, we solve linear boundary value problems of second-order in ordinary differential equations with the generalized finite difference method and compare the numerical accuracy for different orders of approximations. We develop a strategy for dealing with ill-conditioned stars based on the condition number of the matrix of derivatives. In addition, we consider a scheme implemented with parallel processing for the formation of the stars and the calculation of the derivatives. We present some examples with high gradients in irregular discretizations exaggerated on purpose, to highlight the efficiency of the proposed strategy.

本文用广义有限差分法求解二阶常微分方程的线性边值问题,并比较了不同阶近似的数值精度。基于导数矩阵的条件数,提出了一种处理病态星型的策略。此外,我们还考虑了一种并行处理恒星形成和导数计算的方案。我们给出了一些在不规则离散化中故意夸大高梯度的例子,以突出所提出策略的效率。
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引用次数: 2
A software cache autotuning strategy for dataflow computing with UPC++ DepSpawn 基于upc++ DepSpawn的数据流计算软件缓存自动调优策略
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-16 DOI: 10.1002/cmm4.1148
Basilio B. Fraguela, Diego Andrade

Dataflow computing allows to start computations as soon as all their dependencies are satisfied. This is particularly useful in applications with irregular or complex patterns of dependencies which would otherwise involve either coarse grain synchronizations which would degrade performance, or high programming costs. A recent proposal for the easy development of performant dataflow algorithms in hybrid shared/distributed memory systems is UPC++ DepSpawn. Among the many techniques it applies to provide good performance is a software cache that minimizes the communications among the processes involved. In this article we provide the details of the implementation and operation of this cache and we present an autotuning strategy that simplifies its usage by freeing the user from having to estimate an adequate size for this cache. Rather, the runtime is now able to define reasonably sized caches that provide near optimal behavior.

数据流计算允许在满足所有依赖项后立即开始计算。这在具有不规则或复杂依赖模式的应用程序中特别有用,否则这些应用程序要么涉及会降低性能的粗粒度同步,要么涉及高编程成本。最近提出了一个在混合共享/分布式内存系统中开发高性能数据流算法的建议是upc++ DepSpawn。在提供良好性能的许多技术中,软件缓存可以最大限度地减少所涉及的进程之间的通信。在本文中,我们提供了该缓存的实现和操作的详细信息,并提出了一种自动调优策略,该策略通过使用户不必估计该缓存的适当大小来简化其使用。相反,运行时现在能够定义合理大小的缓存,提供接近最佳的行为。
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引用次数: 1
Enabling Quality of Service Provision in Omni-Path Switches 使能全路径交换机的服务质量提供
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-15 DOI: 10.1002/cmm4.1147
Javier Cano-Cano, Francisco J. Andújar, Francisco J. Alfaro-Cortés, José L. Sánchez

The increasing demand of high-performance services has motivated the need of the 1 exaflop supercomputing performance. In systems providing such computing capacity, the interconnection network is likely the cornerstone due to the fact that it may become the bottleneck of the system degrading the performance of the entire system. In order to increase the network performance, several improvements have been introduced such as new architectures. Intel © Omni-Path architecture (OPA) is an example of the constant development of high-performance interconnection networks, which has not been largely studied because it is a recent technology and the lack of public available information. Another important aspect of all interconnect network technologies is the Quality of Service (QoS) support to applications. In this article, we present an OPA simulation model and some implementation details as well as our simulation tool OPASim. We also review the QoS mechanisms provided by the OPA architecture and present the table-based output scheduling algorithm simple bandwidth table.

随着高性能业务需求的不断增长,对1exaflop超级计算性能的需求不断增长。在提供这种计算能力的系统中,互连网络可能是基石,因为它可能成为系统的瓶颈,降低整个系统的性能。为了提高网络性能,引入了一些改进,例如新的体系结构。英特尔©Omni-Path架构(OPA)是高性能互连网络不断发展的一个例子,由于它是一项最新技术并且缺乏公共可用信息,因此尚未进行大量研究。所有互连网络技术的另一个重要方面是对应用程序的服务质量(QoS)支持。在本文中,我们提出了一个OPA仿真模型和一些实现细节,以及我们的仿真工具OPASim。回顾了OPA架构提供的QoS机制,提出了基于表的输出调度算法简单带宽表。
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引用次数: 0
Robust computational method for singularly perturbed system of parabolic convection-diffusion problems with interior layers 带内层抛物型对流扩散问题奇异摄动系统的鲁棒计算方法
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-10 DOI: 10.1002/cmm4.1146
Srinivasan Natesan, Maneesh K. Singh

In this article, we present the convergence analysis of an upwind finite difference scheme for singularly perturbed system of parabolic convection-diffusion initial-boundary-value problems with discontinuous convection coefficient and source term. The proposed numerical scheme is constructed by using the implicit-Euler scheme for the time derivative on the uniform mesh, and the upwind finite difference scheme for the spatial derivatives on a layer-resolving piecewise-uniform Shishkin mesh. It is shown that the numerical solution obtained by the proposed scheme converges uniformly with respect to the perturbation parameter. The proposed numerical scheme is of almost first-order (up to a logarithmic factor) in space and first-order in time. Numerical examples are carried out to verify the theoretical results.

本文给出了具有不连续对流系数和源项的抛物型对流扩散初边值奇摄动系统的迎风有限差分格式的收敛性分析。采用均匀网格上时间导数的隐式欧拉格式和分段均匀Shishkin网格上空间导数的迎风有限差分格式构造了该数值格式。结果表明,该格式得到的数值解相对于扰动参数是一致收敛的。所提出的数值格式在空间上几乎是一阶的(直到一个对数因子),在时间上是一阶的。数值算例验证了理论结果。
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引用次数: 1
Parallel framework for dynamic domain decomposition of data assimilation problems: a case study on Kalman Filter algorithm 数据同化问题的动态域分解并行框架:以卡尔曼滤波算法为例
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-02 DOI: 10.1002/cmm4.1145
Luisa D'Amore, Rosalba Cacciapuoti

We focus on Partial Differential Equation (PDE)-based Data Assimilation problems (DA) solved by means of variational approaches and Kalman filter algorithm. Recently, we presented a Domain Decomposition framework (we call it DD-DA, for short) performing a decomposition of the whole physical domain along space and time directions, and joining the idea of Schwarz's methods and parallel in time approaches. For effective parallelization of DD-DA algorithms, the computational load assigned to subdomains must be equally distributed. Usually computational cost is proportional to the amount of data entities assigned to partitions. Good quality partitioning also requires the volume of communication during calculation to be kept at its minimum. In order to deal with DD-DA problems where the observations are nonuniformly distributed and general sparse, in the present work we employ a parallel load balancing algorithm based on adaptive and dynamic defining of boundaries of DD—which is aimed to balance workload according to data location. We call it DyDD. As the numerical model underlying DA problems arising from the so-called discretize-then-optimize approach is the constrained least square model (CLS), we will use CLS as a reference state estimation problem and we validate DyDD on different scenarios.

研究了基于偏微分方程的数据同化问题,并结合变分方法和卡尔曼滤波算法进行了求解。最近,我们提出了一个领域分解框架(简称DD-DA),它沿着空间和时间方向对整个物理领域进行分解,并结合了Schwarz方法和并行时间方法的思想。为了使DD-DA算法有效地并行化,分配给子域的计算负荷必须均匀分布。通常计算成本与分配给分区的数据实体数量成正比。高质量的分区还要求在计算期间将通信量保持在最低限度。为了解决观测数据不均匀分布和普遍稀疏的DD-DA问题,本文采用一种基于自适应动态定义DD-DA边界的并行负载均衡算法,根据数据位置平衡工作负载。我们称之为DyDD。由于所谓的离散再优化方法所产生的数据处理问题的数值模型是约束最小二乘模型(CLS),我们将使用CLS作为参考状态估计问题,并在不同的场景下验证DyDD。
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引用次数: 1
Some uses of orthogonal polynomials in statistical inference 正交多项式在统计推断中的一些应用
Q3 MATHEMATICS, APPLIED Pub Date : 2021-01-02 DOI: 10.1002/cmm4.1144
Inmaculada Barranco-Chamorro, Christos Grentzelos

Every random variable (rv) X (or random vector) with finite moments generates a set of orthogonal polynomials, which can be used to obtain properties related to the distribution of X. This technique has been used in statistical inference, mainly connected to the exponential family of distributions. In this paper a review of some of its more relevant uses is provided. The first one deals with properties of expansions in terms of orthogonal polynomials for the Uniformly Minimum Variance Unbiased Estimator of a given parametric function, when sampling from a distribution in the Natural Exponential Family of distributions with Quadratic Variance Function. The second one compares two relevant methods, based on expansions in Laguerre polynomials, existing in the literature to approximate the distribution of linear combinations of independent chi-square variables.

每个具有有限矩的随机变量(rv) X(或随机向量)产生一组正交多项式,这些正交多项式可用于获得与X分布有关的性质。这种技术已用于统计推断,主要与指数族分布有关。本文综述了它的一些更相关的用途。第一部分讨论了从具有二次方差函数的自然指数族分布中抽样时,给定参数函数的一致最小方差无偏估计的正交多项式展开式的性质。第二部分比较了文献中存在的两种相关方法,基于Laguerre多项式的展开式来近似独立卡方变量线性组合的分布。
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引用次数: 1
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Computational and Mathematical Methods
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