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Large scale molecular dynamics simulations of a 4-n-pentyl-4′-cyanobiphenyl (5CB) liquid crystalline model in the bulk and as a droplet 4-n-戊基-4 ' -氰基联苯(5CB)液晶体和液滴模型的大规模分子动力学模拟
Pub Date : 2001-10-01 DOI: 10.1016/S1089-3156(01)00017-4
Zhiqiang Wang, James A. Lupo, Soumya Patnaik, Ruth Pachter

Molecular dynamics simulations for 4-n-pentyl-4′-cyanobiphenyl (5CB) with as many as 944 molecules are reported. The order-N fast multipole method (FMM) is used to treat the long-range interactions. For a droplet of 944 molecules, the simulation shows a correlation between the droplet shape and the nematic order and a strong surface effect; little nematic order is found in a 118 molecule droplet. Simulations of the bulk system result in similar order parameters for both the 118 and 944 molecular ensembles. Although the nematic–isotropic transition was not observed at temperatures as high as 400 K using the CHARMM force field, a modification of the force field using ab initio determined partial atomic charges lowers the order parameters.

报道了含有944个分子的4-n-戊基-4′-氰联苯(5CB)的分子动力学模拟。采用n阶快速多极子方法(FMM)处理远程相互作用。对于含有944个分子的液滴,模拟结果表明液滴形状与向列序之间存在一定的相关性,且存在较强的表面效应;在118个分子的液滴中发现了很少的向列序。体系统的模拟结果表明,118和944分子系的有序参数相似。虽然在高达400k的温度下,使用CHARMM力场没有观察到向列-各向同性跃迁,但使用从头算确定部分原子电荷的力场修正降低了有序参数。
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引用次数: 22
Simulations of liquid crystals in Poiseuille flow 泊泽维尔流中液晶的模拟
Pub Date : 2001-10-01 DOI: 10.1016/S1089-3156(01)00004-6
C. Denniston , E. Orlandini , J.M. Yeomans

Lattice Boltzmann simulations are used to explore the behavior of liquid crystals subject to Poiseuille flow. In the nematic regime at low shear rates we find two possible steady-state configurations of the director field. The selected state depends on both the shear rate and the history of the sample. For both director configurations there is clear evidence of shear thinning, a decrease in the viscosity with increasing shear rate. Moreover, at very high shear rates or when the order parameter is large, the system transforms to a ‘log-rolling state’ with boundary layers that may exhibit oscillatory behavior.

晶格玻尔兹曼模拟被用来研究液晶在泊泽维尔流作用下的行为。在低剪切速率的向列状态下,我们发现了两种可能的定向场稳态构型。所选择的状态取决于剪切速率和样品的历史。对于两种定向器配置,都有明显的剪切变薄的证据,粘度随着剪切速率的增加而降低。此外,在非常高的剪切速率或当阶参量很大时,系统转变为具有可能表现出振荡行为的边界层的“原木滚动状态”。
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引用次数: 28
3D finite element modeling of mechanical response in nacre-based hybrid nanocomposites 纳米复合材料力学响应的三维有限元模拟
Pub Date : 2001-10-01 DOI: 10.1016/S1089-3156(01)00012-5
D.R Katti , K.S Katti , J.M Sopp , M Sarikaya

Nacre (mother-of-pearl), the inner layer of seashells is a ceramic laminated biocomposite with exceptional mechanical properties of fracture toughness and strength. The organic layers in the composite play a significant role in the mechanical response of nacre to stresses. In this work, three dimensional finite element models of nacre (constructed in our previous work to design ‘brick and mortar’ micro-architecture of nacre) were used to study influence of nonlinear response of organic component. In this work, nonlinear elasto-plastic models for organic component are applied to model the mechanical response of nacre. Nanoscale material parameters (elastic modulus and hardness) were obtained using nanoindentation experiments. The yield stress of the organic was maintained at 40×10−6, 50×10−6, 60×10−6, 80×10−6, 120×10−6, 240×10−6, 320×10−6, and 400×10−6N/μm2 (40–400 MPa). The choice of initial value of yield stress of organic phase is the onset of nonlinearity in nacre response at that value. Tensile tests were simulated for each of these values of yield stress of organic phase under identical loading conditions of 0–60×10−6N/μm2 in increments of 2.5×10−6N/μm2. For each value of organic phase yield stress stress–strain response of nacre is plotted. The resulting yield stress of nacre was compared to experimentally obtained value. This indicates that a much higher yield stress of organic is necessary to obtain the experimentally obtained yield stress of nacre. Microstructural implications of this result are suggested.

珍珠贝是一种陶瓷层状生物复合材料,具有优异的断裂韧性和强度。复合材料中的有机层在珠层对应力的力学响应中起着重要的作用。在本研究中,我们利用珍珠层的三维有限元模型(在我们之前设计珍珠层“砖和砂浆”微结构的工作中建立的)来研究有机成分非线性响应的影响。本文采用有机组分的非线性弹塑性模型来模拟珍珠层的力学响应。通过纳米压痕实验获得了纳米尺度材料参数(弹性模量和硬度)。有机材料的屈服应力保持在40×10−6、50×10−6、60×10−6、80×10−6、120×10−6、240×10−6、320×10−6和400×10−6N/μm2 (40-400 MPa)。有机相屈服应力初始值的选择是珠层响应在该初始值处非线性的开始。在0-60×10−6N/μm2的相同加载条件下,以2.5×10−6N/μm2为增量,模拟各有机相屈服应力值的拉伸试验。对于每个有机相屈服应力值,绘制了珠层的应力-应变响应图。所得真珠层屈服应力与实验值进行了比较。这表明,要获得实验所得的真珠质屈服应力,需要更高的有机屈服应力。提出了这一结果的显微结构意义。
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引用次数: 119
Multiscale modeling and simulation methods with applications to dendritic polymers 树突聚合物多尺度建模与仿真方法及其应用
Pub Date : 2001-10-01 DOI: 10.1016/S1089-3156(01)00026-5
Tahir Cagin, Guofeng Wang, Ryan Martin, Georgios Zamanakos, Nagarajan Vaidehi, Daniel T Mainz, William A Goddard III

Dendrimers and hyperbranched polymers represent a novel class of structurally controlled macromolecules derived from a branches-upon-branches structural motif. The synthetic procedures developed for dendrimer preparation permit nearly complete control over the critical molecular design parameters, such as size, shape, surface/interior chemistry, flexibility, and topology. Dendrimers are well defined, highly branched macromolecules that radiate from a central core and are synthesized through a stepwise, repetitive reaction sequence that guarantees complete shells for each generation, leading to polymers that are mono-disperse. This property of dendrimers makes it particularly natural to coarsen interactions in order to simulate dynamic processes occurring at larger length and longer time scales. In this paper, we describe methods to construct 3-dimensional molecular structures of dendrimers (Continuous Configuration Boltzmann Biased direct Monte Carlo, CCBB MC) and methods towards coarse graining dendrimer interactions (NEIMO and hierarchical NEIMO methods) and representation of solvent dendrimer interactions through continuum solvation theories, Poisson–Boltzmann (PB) and Surface Generalized Born (SGB) methods. We will describe applications to PAMAM, stimuli response hybrid star-dendrimer polymers, and supra molecular assemblies crystallizing to A15 colloidal structure or Pm6m liquid crystals.

树状大分子和超支化聚合物代表了一类新型的结构控制大分子,来源于分支上的分支结构基序。树状大分子制备的合成过程允许几乎完全控制关键的分子设计参数,如大小、形状、表面/内部化学、柔韧性和拓扑结构。树状大分子是一种定义明确的、高度分支的大分子,从中心核心辐射出来,通过一步一步的、重复的反应序列合成,保证每一代都有完整的外壳,从而产生单分散的聚合物。树状大分子的这一特性使得它特别自然地使相互作用变得粗糙,以便模拟在更长的时间尺度上发生的动态过程。本文通过连续溶剂化理论、泊松-玻尔兹曼(PB)方法和表面广义玻生(SGB)方法,描述了构建树状大分子三维分子结构的方法(连续构型Boltzmann有偏直接蒙特卡罗法,CCBB MC)和粗粒树状大分子相互作用的方法(NEIMO和分层NEIMO方法)以及溶剂树状大分子相互作用的表征方法。我们将描述PAMAM,刺激响应杂化星形树状聚合物,以及结晶成A15胶体结构或Pm6m液晶的超分子组件的应用。
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引用次数: 37
Monte Carlo simulations on reinforcement of an elastomer by oriented prolate particles 定向长粒增强弹性体的蒙特卡罗模拟
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00024-6
M.A. Sharaf , A. Kloczkowski , J.E. Mark

Particulate fillers used to reinforce polymers need not be spherical; some experiments have in fact been carried out on prolate ellipsoidal particles. These experimental results encouraged Monte Carlo simulations on prolate particles in amorphous polyethylene described in the present report. The particles were placed on a cubic lattice, and were oriented in a way consistent with their orientation in the composites experimentally investigated. Rotational isomeric state representations of the chains were then generated for the polymer matrix, with the discarding of spatial configurations that involved chains impinging on any of the particles. The chain end-to-end distributions were found to be non-Gaussian, and their dependences on the excluded volumes of the filler particles were documented. There were found to be particle-induced deformations which corresponded to decreased chain dimensions and radii of gyrations upon insertion of spherical particles amongst the chains, which is consistent with earlier simulations and with recent neutron scattering results. The decreases in dimensions and radii, however, were subsequently followed by increases upon increasing the axial ratios to distort the spherical particles into prolate shapes. The chain dimensions also became anisotropic, with significant differences parallel and perpendicular to the direction of the particle axes. Use of these distributions in the standard three-chain model of rubber-like elasticity gave the corresponding elongation moduli. The stress–strain isotherms thus obtained were found to be dependent on the sizes, numbers and axial ratios of the particles, as expected. In particular, the reinforcement from the prolate particles was found to be greatest in the parallel direction, and the changes were in at least qualitative agreement with the corresponding experimental results.

用于增强聚合物的颗粒填料不必是球形的;事实上,已经对长形椭球粒子进行了一些实验。这些实验结果鼓励了本报告中描述的对非晶聚乙烯中长粒的蒙特卡罗模拟。颗粒被放置在立方晶格上,取向与实验研究的复合材料中的取向一致。然后为聚合物矩阵生成链的旋转同分异构体状态表示,丢弃涉及链撞击任何粒子的空间构型。发现链端到端分布是非高斯分布,并且它们对填料颗粒的排除体积的依赖性被记录下来。在链中插入球形粒子后,发现了粒子引起的变形,这与链尺寸和旋转半径的减小相对应,这与早期的模拟和最近的中子散射结果一致。然而,尺寸和半径的减小随后随着轴向比的增加而增加,从而使球形颗粒扭曲成长形。链的尺寸也变得各向异性,平行和垂直于粒子轴方向的差异显著。在类橡胶弹性的标准三链模型中使用这些分布给出相应的延伸模量。由此获得的应力-应变等温线与颗粒的大小、数量和轴向比有关,与预期一致。特别是,在平行方向上,长形颗粒的增强作用最大,其变化与相应的实验结果至少在定性上是一致的。
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引用次数: 38
Effect of hydrogen bonds on the amorphous phase of a polymer as determined by atomistic molecular modelling 氢键对聚合物非晶相的影响,由原子分子模型确定
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00022-2
P. Gestoso, J. Brisson

Molecular simulations of poly(vinyl phenol) were performed to study the effect of hydrogen bonds. Three conformations were constructed and their structure was validated in terms of the solubility parameter and gyration radius. Amorphousness was confirmed by calculating the X-ray pattern and pair correlation function. Isotropy of the structure was verified using the bond-orientational correlation function for backbone, phenyl rings, and O–H groups forming hydrogen bonds. Glass transition temperature was calculated using a stepwise change on temperature at constant pressure. The values were found to be comparable to experimental data and were consistent with poly(styrene) simulations published in the literature. The percentage of hydrogen bonds found in the model, 63%, was in good agreement with previous semi-quantitative evaluation by FTIR spectroscopy.

对聚乙烯基苯酚进行了分子模拟,研究了氢键的影响。构造了三种构象,并根据溶解度参数和旋转半径对其结构进行了验证。通过计算x射线图和对相关函数,确定了非晶性。利用键取向相关函数对主链、苯基环和O-H基团形成氢键进行了各向同性验证。玻璃化转变温度是用恒压下温度的逐步变化来计算的。这些数值与实验数据相当,与文献中发表的聚苯乙烯模拟结果一致。在模型中发现的氢键百分比为63%,与之前用FTIR光谱进行的半定量评估很好地一致。
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引用次数: 19
Simulation of the glass transition and physical ageing 模拟玻璃化转变和物理老化
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00020-9
M.J. Jenkins, J.N. Hay

A kinetic model simulating the glass transition and enthalpic relaxation in poly(3-hydroxybutyrate) is introduced. The model is based on the concept that enthalpic relaxation or physical ageing is a continuation of the glass forming process and uses the KWW function to describe the glass formation process and the subsequent ageing of the glass. Non-linearity is introduced by incorporating a dependence of the relaxation time on the fictive temperature. The effects of non-linearity on the distribution of relaxation times and the physical ageing process are investigated together with the development of the endothermic ageing peak at the glass transition with increasing extents of ageing.

介绍了一种模拟聚3-羟基丁酸盐玻璃化转变和焓弛豫的动力学模型。该模型基于焓松弛或物理老化是玻璃形成过程的延续的概念,并使用KWW函数来描述玻璃的形成过程和随后的玻璃老化。非线性是通过结合弛豫时间对有效温度的依赖而引入的。研究了非线性对弛豫时间分布和物理老化过程的影响,以及随着老化程度的增加,玻璃化转变处吸热老化峰的发展。
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引用次数: 9
Advanced Polymer Chemistry. A Problem Solving Guide 高级聚合物化学。解决问题指南
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00023-4
J.E. Mark
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引用次数: 0
Molecular simulation and experimental characterisation of monotropic and enantiotropic polymers containing azobenzene and diphenyl mesogens 含偶氮苯和二苯基介源的单向和对映性聚合物的分子模拟和实验表征
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00017-9
D Pavel , J Ball , S Bhattacharya , R Shanks , N Hurduc , O Catanescu

Molecular simulation techniques have been applied to previously synthesised liquid crystalline polymers containing azobenzene and diphenyl mesogenic groups within the chain. Single chains and amorphous unit cells of aromatic polymers with a degree of polymerisation of 4–16 and containing propylene and diethyletheric (oxydiethylene) spacers were used. The energy was minimised and then molecular dynamics were performed for 1000 ps at seven temperatures between 10 and 600 K. The axial ratio or coefficient of asymmetry was calculated from computer-generated structures. The predictive capability of the orientational order parameter was used to estimate the degree of orientation and the liquid crystalline–isotropic transition temperature of the polymers. The simulated results for the monotropic polymers agreed very well with Maier–Saupe mean field theory and experimental data, though the enantiotropic polymer did not show a good agreement. The predicted glass transition and decomposition temperatures of the simulated polymers are also reported.

分子模拟技术已经应用于先前合成的含有偶氮苯和二苯基链内介生基团的液晶聚合物。单链和无定形单元电池的芳香族聚合物的聚合度为4-16和含有丙烯和二乙醚(氧二乙烯)间隔。将能量最小化,然后在10到600 K之间的7个温度下进行1000 ps的分子动力学。根据计算机生成的结构计算轴比或不对称系数。利用取向序参数的预测能力来估计聚合物的取向程度和液晶-各向同性转变温度。单向性聚合物的模拟结果与Maier-Saupe平均场理论和实验数据吻合较好,而对映性聚合物的模拟结果不太吻合。并对模拟聚合物的玻璃化转变和分解温度进行了预测。
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引用次数: 13
Derivation of continuous molecular weight distributions from the generating function 由生成函数推导连续分子量分布
Pub Date : 2001-08-01 DOI: 10.1016/S1089-3156(00)00026-X
K.S. Whiteley, A. Garriga

A method described in the statistical literature for the numerical inversion of Laplace Transforms of real functions has been adapted for the derivation of molecular weight distributions from calculations of the generating function for a polymeric system. It has been shown that a third-order refinement is sufficiently accurate for molecular weight distributors broader than 4.0. This allows the calculations to be carried out with a precision of 16 decimal digits which is commonly used in Fortran. Where higher precision is available, the treatment is applicable to narrower MWDs.

统计文献中描述的实数函数的拉普拉斯变换的数值反演方法已被用于从聚合物体系的生成函数的计算中推导分子量分布。结果表明,对于大于4.0的分子量分布,三阶精化是足够精确的。这允许以16位十进制数字的精度进行计算,这在Fortran中是常用的。在精度更高的情况下,处理适用于更窄的mwd。
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引用次数: 7
期刊
Computational and Theoretical Polymer Science
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