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Internal coordinate phase space analysis of macromolecular systems 大分子体系的内坐标相空间分析
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00069-0
A.K. Mazur , B.G. Sumpter , D.W. Noid

In recent studies, as well as the results presented herein, it has been shown that the classical dynamics of macromolecular systems exhibit chaos far below the zero-point energy consequently resulting in the loss of a qualitative correspondence to quantum behavior. Mechanisms responsible for this undesirable and unrealistic dynamics have been shown to be due to the flow of energy out of the high frequency modes into the low frequency, large amplitude modes. A very powerful tool for eliminating the high frequency modes in macromolecular systems has been the development of internal coordinate molecular dynamics. This method only integrates the chosen degrees of freedom that determine the overall structure of the molecular system (the torsion). In this paper, we have used this technique with the appropriate analysis from semi-classical theory and nonlinear dynamics to study the trajectories generated for some simple polymer fragments. The method does effectively eliminate most of the problems associated with zero-point energy flow and the resulting phase space structure exhibits a high degree of stable quasiperiodic motion. However, the semi-classical relationships to quantum mechanics in this quasiperiodic regime require that initial conditions be chosen carefully in order for the resulting trajectory to have any quantum relevance.

在最近的研究中,以及本文提出的结果表明,大分子系统的经典动力学表现出远低于零点能量的混沌,从而导致与量子行为的定性对应的丧失。造成这种不理想和不现实的动力学的机制已被证明是由于能量从高频模态流入低频、大振幅模态。内坐标分子动力学的发展是消除大分子体系中高频模式的一个非常有力的工具。这种方法只集成了决定分子系统整体结构(扭转)的选定自由度。在本文中,我们利用这种技术,结合半经典理论和非线性动力学的适当分析,研究了一些简单聚合物碎片产生的轨迹。该方法有效地消除了与零点能量流相关的大部分问题,所得相空间结构表现出高度稳定的准周期运动。然而,在这种准周期状态下,与量子力学的半经典关系要求仔细选择初始条件,以便使所得到的轨迹具有任何量子相关性。
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引用次数: 1
A Monte Carlo lattice model for chain diffusion in dense polymer systems and its interlocking with molecular dynamics simulation 密集聚合物体系中链式扩散及其互锁的蒙特卡罗晶格模型与分子动力学模拟
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00074-4
K.R. Haire, T.J. Carver, A.H. Windle

The paper reports the development of a Monte Carlo lattice model (cubic F) of polymer chains which is able to access times where the diffusion of the centre-of-mass of the chains is the dominant process, even though the chain lengths are well above that for entanglement. The volume of the model is large when compared with the volume of gyration of the individual molecules. The model incorporates an algorithm, which allows for the possibility of co-operative motions over sections of the chains and increases the time efficiency of the simulation. Both the model and the modifying algorithm have been tested against the known scaling laws.

The model, for shorter chains, is ‘reverse mapped’ into full atomic detail as polyethylene and the shorter time processes simulated using molecular dynamics (MD). The MD model is tested against experimental diffusion data for polyethylene, of the same molecular weight and at the same temperature, and then used to time-calibrate the lattice model.

Both the fine grained MD model and the coarse grained MC model are thus interlocked to cover a time range from the individual atomic motions of MD up to the order of a microsecond, a range of six orders of magnitude.

本文报道了聚合物链的蒙特卡罗晶格模型(立方F)的发展,该模型能够访问链的质心扩散是主要过程的时间,即使链的长度远远超过纠缠的长度。与单个分子的旋转体积相比,模型的体积较大。该模型结合了一种算法,该算法允许在链的各个部分上进行合作运动的可能性,并提高了仿真的时间效率。模型和修正算法都已针对已知的标度定律进行了测试。对于较短的链,该模型被“反向映射”为聚乙烯的完整原子细节,并使用分子动力学(MD)模拟了较短的时间过程。在相同的分子量和温度条件下,将MD模型与聚乙烯的实验扩散数据进行了对比,并对晶格模型进行了时间校准。因此,细粒度MD模型和粗粒度MC模型相互关联,以覆盖从MD的单个原子运动到微秒数量级的时间范围,即六个数量级的范围。
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引用次数: 39
Solubility of water in polymers—atomistic simulations 水在聚合物中的溶解度——原子模拟
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00061-6
B. Nick , U.W. Suter

The combination of the thermodynamic-integration approach and Widom's particle-insertion method is shown to be appropriate to determine the excess chemical potential of water in dense, amorphous polymer microstructures from MD simulation at an atomistically detailed level. The two-step method is applied to bisphenol-A–polycarbonate (BPA–PC) and polyvinylalcohol (PVA). The results are compared to previously published calculations on water sorption of various polyamides and show the applicability of the two-step method for the calculation of the excess chemical potential of water in a variety of polymer materials to obtain an estimate of their water sorption behavior.

热力学积分方法和Widom的粒子插入方法相结合,可以在原子细节水平上从MD模拟中确定致密非晶态聚合物微结构中水的过量化学势。两步法适用于双酚a -聚碳酸酯(BPA-PC)和聚乙烯醇(PVA)。结果与先前发表的各种聚酰胺的吸水性计算结果进行了比较,并表明两步法适用于计算各种聚合物材料中水的过量化学势,以获得其吸水行为的估计。
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引用次数: 22
A transport model for swelling of polyelectrolyte gels in simple and complex geometries 聚电解质凝胶在简单和复杂几何结构中的溶胀输运模型
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00060-4
E.C. Achilleos , K.N. Christodoulou , I.G. Kevrekidis

A model for the swelling of polyelectrolyte gels in salt solutions is developed and solved numerically. The model accounts for the effect of network stress, osmotic pressure, and electrical potential on the species diffusive flux. The osmotic pressure and the network stress are derived from the Helmholtz free energy of the system that is the sum of mixing, elastic, and electrostatic components. One- and two-dimensional swelling in unconstrained and constrained geometries are simulated for a salt–solvent–polymer system. The transient and equilibrium fields of electrical potential, concentrations, deformation, and stress are obtained. Transient overshoots and non-uniformities in the residual profiles are predicted.

建立了聚电解质凝胶在盐溶液中的溶胀模型,并进行了数值求解。该模型考虑了网络应力、渗透压和电势对物种扩散通量的影响。渗透压和网络应力由系统的亥姆霍兹自由能导出,亥姆霍兹自由能是混合、弹性和静电分量的总和。模拟了盐溶剂-聚合物体系在无约束和约束几何条件下的一维和二维膨胀。得到了电势、浓度、变形和应力的瞬态场和平衡场。预测了残余剖面的瞬态超调和非均匀性。
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引用次数: 47
Modelling the molecular weight distribution in terpolymerization systems with donor–acceptor complexes 具有供体-受体配合物的三元聚合体系中分子量分布的建模
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00076-8
P. Rivero , E. Etchechury

In this work we present, for the first time, a mathematical development of the moments of the molecular weight distribution in terpolymerization systems where donor–acceptor complexes are formed and the propagating reactions are carried out according to the complex participation model. The resulting set of equations is applied to the system formed by vinyl chloride (VC), vinyl acetate (VAc) and maleic anhydride (MA), in order to show the use of the equations and the type of information that might be obtained from them.

在这项工作中,我们首次提出了三元聚合体系中分子量分布矩的数学发展,在三元聚合体系中,供体-受体络合物形成,并根据络合物参与模型进行传播反应。将所得的方程组应用于氯乙烯(VC)、醋酸乙烯(VAc)和马来酸酐(MA)组成的体系,以说明方程组的用途和从中可能得到的信息类型。
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引用次数: 8
Bush region in the propagation of electrical degradation in polymers 布什区在聚合物中传播电降解
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00075-6
O.P. Poznansky

The model of electrical degradation describes the observed growth of damage in polymers quantitatively. It is shown that the fractal approach can be used to explain the non-monotonic behaviour of voltage versus scale for electrical degradation.

电降解模型定量地描述了观察到的聚合物损伤的增长。结果表明,分形方法可用于解释电退化中电压对尺度的非单调行为。
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引用次数: 7
Simulation of the specific interactions between polyamide-6 and a thermoplastic polyurethane 聚酰胺-6与热塑性聚氨酯之间特定相互作用的模拟
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00059-8
A Genovese, R.A Shanks

Polyamides have many desirable properties such as high melting temperatures, chemical resistance and superior mechanical properties. However, its crystalline morphology can limit its applications. It is the specific interaction, hydrogen bonding that gives rise to the crystalline structure of polyamides. This interaction is strong and important when blending on the final morphology and mechanical properties. Polyurethane contains polar functionality that can also interact with the polar component of polyamide. Hence, it is important to study the interaction between such a blend as polyurethane can enhance the toughness of polyamide due to its elastic properties. This study is an insight into the specific interaction between two polar polymers in a simulation whereby the interaction is maximised. Hydrogen bonding has been observed between molecules of either polyamide–polyurethane and polyamide–polyamide, and it is sufficiently strong to cause the polymer chains to distort rather than disrupt the hydrogen bonds. When groups of like polarity, such as carbonyl groups, come into proximity, the polymer chains again distort from their regular conformation because of mutual repulsion.

聚酰胺具有许多理想的性能,如高熔点,耐化学性和优越的机械性能。然而,它的晶体形态限制了它的应用。这是特殊的相互作用,氢键,产生聚酰胺的晶体结构。当混合最终的形貌和机械性能时,这种相互作用是强烈而重要的。聚氨酯含有极性功能,也可以与聚酰胺的极性组分相互作用。因此,研究这种共混物之间的相互作用是很重要的,因为聚氨酯的弹性性能可以提高聚酰胺的韧性。这项研究是对两个极性聚合物在模拟中相互作用最大化的具体相互作用的深入了解。在聚酰胺-聚氨酯和聚酰胺-聚酰胺分子之间已经观察到氢键,氢键的强度足以使聚合物链扭曲,而不是破坏氢键。当极性相似的基团,如羰基靠近时,由于相互排斥,聚合物链再次从它们的规则构象扭曲。
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引用次数: 28
Glass transition temperature of poly(vinylchloride) from molecular dynamics simulation: explicit atom model versus rigid CH2 and CHCl groups model 分子动力学模拟的聚氯乙烯玻璃化转变温度:显式原子模型与刚性CH2和CHCl基模型
Pub Date : 2001-01-01 DOI: 10.1016/S1089-3156(99)00070-7
B.F Abu-Sharkh

Glass transition temperature is the most important descriptor of the properties of amorphous polymers. In this study, molecular dynamics (MD) simulation is used to generate volume-temperature (VT) data at constant pressure for poly(vinylchloride) (PVC) over a temperature range that includes the experimental glass transition temperature (Tg) to study the validity of MD simulation in predicting Tg of amorphous polar polymers. PVC contains a polar group (chloride) which induces a partial charge distribution on all atomic sites of the polymer repeat unit. Two types of MD simulation were conducted. In the first type, all atomic sites were explicitly represented in the polymer chain model. In the second type of simulation, the CH2 and CHCl groups were modeled as rigid units to minimize the computational effort. The Tg values obtained from the MD VT curves were slightly displaced upward relative to the experimental Tg. The rigid unit model tends to under estimate the liquid density compared with the explicit atom model. MD simulation seems to be a practical procedure for predicting the Tg of polar polymers. The rigid unit model provides substantial saving in the computational effort without loss of accuracy.

玻璃化转变温度是表征非晶聚合物性质的最重要指标。在本研究中,分子动力学(MD)模拟被用于生成恒压下的聚氯乙烯(PVC)在包括实验玻璃化转变温度(Tg)的温度范围内的体积温度(VT)数据,以研究MD模拟在预测非晶极性聚合物Tg中的有效性。PVC含有一个极性基团(氯),它在聚合物重复单元的所有原子位置上诱导部分电荷分布。进行了两种类型的MD仿真。在第一种类型中,所有的原子位置都显式地表示在聚合物链模型中。在第二种模拟中,CH2和CHCl组被建模为刚性单元,以尽量减少计算工作量。从MD - VT曲线得到的Tg值相对于实验Tg有轻微的上移。与显式原子模型相比,刚性单元模型倾向于低估液体密度。MD模拟似乎是一种预测极性聚合物Tg的实用方法。刚性单元模型在不损失精度的情况下大大节省了计算工作量。
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引用次数: 37
Chain statistics and heat of reaction in random copolymerization 无规共聚的链统计和反应热
Pub Date : 2000-08-18 DOI: 10.1016/S1089-3156(99)00058-6
J. Dayantis
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引用次数: 0
A generalized method to calculate diffusion rates in polydisperse systems. Application to miscible polymer pairs in the concentrated regime 计算多分散系统中扩散速率的一种广义方法。浓态下混相聚合物对的应用
Pub Date : 2000-08-18 DOI: 10.1016/S1089-3156(99)00071-9
E. Pardo , J.P. Tomba , J.M. Carella

A generalized method for calculating diffusion rates in polydisperse systems, valid in the concentrated regime, is outlined. In the formulation of the method the discrete variable that describes the molecular size, is replaced by a continuous variable in the same range. This replacement diminishes the number of degrees of freedom but keeping the essential physics of the original statement. The effects of monomeric friction coefficient, Flory-Huggins thermodynamic interaction parameter, individual species molecular weights, local molecular weights distribution and local Tg are consistently included in the model.

The method is used to calculate concentration distribution profiles generated by diffusion of polydisperse polymers blends, and experimentally tested. For this purpose polystyrene with discrete (bimodal and tetramodal) molecular weight distributions and polystyrene with wide and continuous molecular weight distributions were used to simulate polydisperse systems. They are allowed to diffuse in a blend of polyphenylene oxide and polystyrene.

The simulated concentration profiles are compared with results obtained by using two experimental techniques based on independent physical properties, which give complementary information: Raman spectroscopy and DMA. The total PS concentration profiles calculated using the proposed method agree well with Raman spectroscopy results. Simulated DMA results—which are sensitive to the PS species molecular weight distribution—obtained using the concentration profiles calculated for each PS molecular weight species, agree well with the experimental DMA results. Calculations based on average molecular weights on the other hand, give incorrect results.

本文概述了一种计算多分散体系中扩散速率的广义方法,该方法在浓态下是有效的。在该方法的公式中,描述分子大小的离散变量被同一范围内的连续变量所取代。这种替换减少了自由度的数量,但保留了原始表述的基本物理性质。模型一致地考虑了单体摩擦系数、Flory-Huggins热力学相互作用参数、单体分子量、局部分子量分布和局部Tg的影响。用该方法计算了多分散聚合物共混物扩散产生的浓度分布曲线,并进行了实验验证。为此,采用离散(双峰和四峰)分子量分布的聚苯乙烯和宽而连续的分子量分布的聚苯乙烯来模拟多分散体系。它们可以在聚苯乙烯和聚苯乙烯的混合物中扩散。将模拟的浓度曲线与基于独立物理性质的两种实验技术得到的结果进行了比较,这两种实验技术提供了互补的信息:拉曼光谱和DMA。用该方法计算的总PS浓度分布与拉曼光谱结果吻合较好。模拟结果与实验结果吻合较好,对PS分子量分布较为敏感。另一方面,基于平均分子量的计算会给出不正确的结果。
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引用次数: 2
期刊
Computational and Theoretical Polymer Science
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