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PGE2-EP2/EP4 axis: A new perspective on cancer immunotherapy PGE2-EP2/EP4轴:癌症免疫疗法的新视角
Pub Date : 2024-09-14 DOI: 10.1002/mog2.90
Lin Chen, Yu-Xin Xu, Jian-Liang Zhou
<p>Lacher et al.<span><sup>1</sup></span> in a recent publication in <i>Nature</i>, revealed a crucial mechanism that limits the responsiveness of TCF1<sup>+</sup> tumor-infiltrating lymphocytes (TILs) to interleukin-2 (IL-2), thereby impeding the anti-cancer T cell response derived from these cells. They identified the prostaglandin E<sub>2</sub> (PGE<sub>2</sub>)-EP<sub>2</sub>/EP<sub>4</sub> axis as a molecular target to restore IL-2 responsiveness in anti-cancer TILs, leading to cancer immune control. This study provides critical insights into the molecular interactions that govern TIL functionality and IL-2 responsiveness, which are essential for effective immunotherapy. Moreover, it suggests that therapeutic strategies aimed at inhibiting the PGE<sub>2</sub>-EP<sub>2</sub>/EP<sub>4</sub> axis could enhance the efficacy of IL-2 based immunotherapies, potentially offering a new avenue for cancer treatment, particularly in tumors where TILs are a significant component of the immune response (Figure 1).</p><p>Tumor immunotherapy marks a significant breakthrough in cancer treatment, with research into immune cells and the tumor microenvironment (TME) uncovering various regulatory factors that influence immune cell activity within tumors. Tumor-derived PGE<sub>2</sub> plays a crucial role in tumor immune evasion and acts as a key inflammatory mediator. Previous studies have shown that PGE<sub>2</sub> affects immune cell activity, function, and metabolism, impacting their ability to recognize and target tumors.<span><sup>2-4</sup></span> This regulatory role of PGE<sub>2</sub> is particularly important for the efficacy of tumor immunotherapy, especially concerning CD8<sup>+</sup> T cells. CD8<sup>+</sup> T cells are vital components of the immune system, responsible for identifying and eliminating tumor cells by recognizing specific antigens on their surfaces. Upon recognition, they release perforins and granzymes to induce apoptosis in tumor cells, contributing to tumor clearance and the success of immunotherapy.<span><sup>5</sup></span> However, the mechanisms by which PGE<sub>2</sub> limits the effector expansion of CD8<sup>+</sup> T cells, particularly in the TME, remain unclear. This study investigates the interaction between PGE<sub>2</sub> and CD8<sup>+</sup> T cells, revealing how PGE<sub>2</sub> restricts the effector expansion of tumor-infiltrating stem-like CD8<sup>+</sup> T cells and its significance in tumor immunotherapy. The findings provide a theoretical basis and clinical guidance for optimizing immunotherapy strategies.</p><p>This study has revealed that tumor-derived PGE<sub>2</sub> significantly inhibits the expansion and effector differentiation of TCF1<sup>+</sup> CD8<sup>+</sup> TILs, which are crucial for sustaining a long-term anti-tumor response. The expansion of these T cells ensures a sufficient quantity of effector cells, while their differentiation into effector cells is essential for directly attacking and eliminatin
该研究揭示了抗原特异性TIL在根除肿瘤中的关键作用。该研究揭示了抗原特异性TILs在根除肿瘤中的关键作用。缺乏EP2/EP4的T细胞在肿瘤内表现出持续扩增和特化分化。这进一步证实了这些 T 细胞在肿瘤中的重要作用。通过干预IL-2R信号通路阻断IL-2R信号转导,消除了EP2/EP4缺乏的T细胞在肿瘤扩增中的优势,强调了这一信号通路在抗肿瘤免疫中的重要作用。这项研究强调了肿瘤源性 PGE2 在 TME 中的关键作用,尤其是在抑制 CD8+ TIL 扩增和 TCF1+ 干样 TIL 的效应分化方面,为癌症免疫逃避机制提供了新的视角。以前的研究表明,PGE2 通过 EP2/EP4 通路抑制 TIL 对 IL-2 的反应,强调了它们在调节免疫反应中的作用。本研究揭示了 EP2/EP4 信号在 TCF1+ TIL 中的微调作用,揭示了肿瘤免疫逃避机制,从而加深了人们的理解。它独特地强调了 PGE2 介导的 EP2/EP4 信号如何调节 IL-2 转导,从而促进肿瘤与免疫的相互作用和潜在的治疗靶点。具体来说,PGE2通过下调IL-2受体亚基,尤其是IL-2Rβ和γc链,抑制TIL对IL-2的反应性。该研究提出了一种创新策略,通过破坏PGE2-EP2/EP4信号转导来增强CD8+ T细胞的IL-2反应性,从而诱导TIL介导的保护性抗癌免疫,这在免疫疗法中具有临床意义。未来的研究应侧重于进一步阐明PGE2-EP2/EP4信号轴在肿瘤免疫中的作用,特别是它对CD4+ T细胞和巨噬细胞等其他关键免疫细胞的调节作用。了解这些机制可为研究如何通过调节该轴增强 T 细胞介导的对肿瘤细胞的细胞毒性提供新的见解,从而为改善癌症免疫疗法提供新的策略。此外,IL-2 信号传导的复杂性仍未被完全理解,因此今后的研究有必要确定该通路中的其他潜在调控因子及其相互作用,从而发现新的治疗靶点。此外,在临床环境中针对 PGE2-EP2/EP4 轴的可行性和安全性的研究仍存在很大差距。未来的临床前和临床研究应优先评估这些靶点的安全性和有效性,为其临床应用奠定基础。解决这些问题不仅能加深我们对肿瘤免疫逃避机制的理解,还能支持下一代免疫疗法的开发,最终提高癌症患者的生存率和生活质量:陈琳和周建良:构思手稿结构并修改手稿。陈琳:起草初稿。徐宇新:撰写初稿:制图。所有作者阅读并批准了最终稿件。作者声明无利益冲突。
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引用次数: 0
Deciphering transcriptional bursts and enhancer dynamics: Advancing cancer therapeutics through single-cell global run-on sequencing 解密转录突变和增强子动态:通过单细胞全球连续测序推进癌症治疗
Pub Date : 2024-09-08 DOI: 10.1002/mog2.88
Xiangyu Pan, Feifei Na, Xuelan Chen
<p>The pioneering work of Phillip A. Sharp's research group has led to the development of a cutting-edge single-cell nascent RNA sequencing assay, revolutionizing our understanding of transcription dynamics. The study, published in Nature, incorporates click chemistry into global run-on and sequencing (GRO-seq) to create a single-cell GRO-seq (scGRO-seq) technique.<span><sup>1</sup></span> This method allows for the precise capture of the episodic and coordinated nature of transcription at high resolution, revealing critical dynamics such as burst size and enhancer-gene interactions. Such insights are particularly vital for unraveling the complexities of transcription regulation and cell cycle dynamics across various developmental stages and in the pathological context of diseases like cancer.</p><p>Transcription in development and cancer biology involves short bursts of activity and lengthy silent periods, essential for gene regulation. Core regulatory elements like promoters, transcription factors, and enhancers play key roles in these bursts. Enhancers, specific to cell types and states, regulate genes over long distances and are often linked to disease regions, making them potential targets for cancer therapies.<span><sup>2</sup></span> Current genomic tools provide insights into gene activation precursors but lack real-time transcription event capture. scGRO-seq addresses this gap, offering a dynamic view of regulatory mechanisms for targeted cancer treatment.</p><p>The scGRO-seq technique offers a novel and advanced method for analyzing genome-wide transcription dynamics at a single-cell resolution, filling critical gaps in understanding transcriptional regulation. This method involves labeling nascent RNAs with modified nucleotide triphosphates that contain alkyne groups during a nuclear run-on reaction (Figure 1A). These RNAs are subsequently linked to azide-tagged, single-cell barcode DNA molecules through copper(I)-catalyzed azide-alkyne cycloaddition (CuAAC), known for its efficiency and robustness.<span><sup>3</sup></span> This process not only preserves the integrity of the nuclear membrane but also selectively enriches nascent RNA. Postreaction, these barcoded RNAs are pooled, reverse-transcribed, and PCR amplified to construct a sequencing library, which is then used to detail transcriptional activity within individual cells (Figure 1A).</p><p>The scGRO-seq method has revolutionized the understanding of transcriptional dynamics by refining the approach to detect transcription bursts. Focusing on a 10 kb central gene region and excluding the ends with paused polymerases, it utilizes an RNA Polymerase II elongation rate of 2.5 kb/min, limiting the burst detection window to just 4 min. This setup enables precise measurement of burst sizes, which range from 1 to 4 RNA polymerases, with an average of 1.23, and a mean interval between bursts that aligns with the previously reported 2-h global nascent transcription cycle by intron seqFISH
对近 700 万个增强子-基因对进行了详细的置换和相关性分析,发现有一个重要的子集(0.6%)在 200 kb 范围内表现出共同转录,尽管这个子集很小。值得注意的是,超级增强子与长达 400 kb 的基因转录显示出更强的相关性,突显了细胞周期调控所必需的空间成分。对时间动态的进一步研究发现,增强子的活动往往先于相关基因启动子的转录,这表明增强子在基因表达中起着潜在的启动作用。这种现象在多能相关基因(如 Sox2 和 Nanog4)的转录中尤为明显4 ,增强子的活性先于基因本身(图 1C)。使用更小的基因组分区进行更精细的分析证实,增强子的活性确实可以启动多个增强子-基因对的转录。这些见解得到了 CRISPR 干扰研究的支持,研究显示增强子被破坏后基因表达量减少,这强调了一种复杂而微调的时间调控机制。增强子与基因之间复杂的相互作用以及抗药性机制的出现,凸显了在癌症治疗中靶向转录增强子所面临的挑战。例如,在前列腺癌和白血病中使用溴基底域和末端外域(BET)抑制剂可能会无意中激活 CDK9 和 Wnt 信号转导等替代通路,而这些通路会影响基因表达和癌细胞存活,从而导致抗药性的产生(图 1D)。这种相互关联性突出表明,需要针对多种调控途径采取多方面的治疗策略,以有效控制或预防耐药性。此外,增强子靶向疗法在不同癌症类型中的疗效也不尽相同,这主要是由于特定的增强子-基因配置和遗传背景造成的。例如,EZH2 抑制剂有利于以组蛋白甲基化异常为特征的淋巴瘤,但会加重弥漫性固有髓鞘胶质瘤和神经纤维瘤病等具有不同基因改变的疾病(图 1D)。同样,虽然组蛋白去乙酰化酶抑制剂已被 FDA 批准用于治疗某些淋巴瘤和骨髓瘤,但除非与 BET 抑制剂或化放疗等疗法联合使用,否则它们对其他癌症的疗效有限5(图 1D)。这些观察结果表明,在开发癌症疗法时,需要采用精确的靶向方法,并加深对增强子编程的理解。在这种情况下,scGRO-seq 的未来意义深远。通过对增强子-基因相互作用和转录动态提供高分辨率的单细胞洞察,scGRO-seq 可以确定新的增强子靶点和不同癌症类型特有的调控网络。这项技术可以揭示特定的增强子是如何导致耐药性的,并有助于设计先发制人地针对代偿途径的联合疗法。此外,scGRO-seq 还能详细绘制增强子-基因动态图,有助于开发通过抑制增强子功能或改变肿瘤发生过程中的转录机制来特异性调节增强子活性的药物。通过检测精确时间窗内的共转录,scGRO-seq 能让我们深入了解增强子如何直接影响基因激活,从而加深我们对发育细胞和癌细胞中基因调控的理解(图 1C、D)。找出与预后不良或耐药性相关的增强子-基因对,可以开发出小分子抑制剂或反义寡核苷酸等靶向治疗方法。将这些靶向疗法与标准疗法相结合,可以提高疗效并对抗耐药性,从而开创以癌细胞调控结构为重点的精准肿瘤学新时代。潘翔宇和陈雪兰提出了构思和提纲。潘翔宇组织并处理了图表。潘翔宇和纳菲菲修改了手稿。陈雪兰和纳菲菲参与研究督导。所有作者均已阅读并批准最终稿件。作者声明无利益冲突。
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引用次数: 0
CoCl2-induced glioma hypoxia environment enhances CD47-SIRPα to promote tumor immune evasion CoCl2诱导的胶质瘤缺氧环境可增强CD47-SIRPα,从而促进肿瘤免疫逃避
Pub Date : 2024-08-25 DOI: 10.1002/mog2.87
Xiangfei Ding, Jianbing Hou, Xiaosong Hu, Wen Peng, Yongsen Li, Gaichao Zhao, Hongjuan Cui, Zonghui Wu, Ping Liang

Elevated levels of tumor-associated macrophages and microglia in the immune microenvironment of malignant gliomas promote tumor growth and progression. Although immune evasion has been implicated in these processes, the mechanisms underlying the regulation of CD47-SIRPα-mediated immune evasion under hypoxic conditions remain unclear. Therefore, this study aimed to explore the mechanisms through which CD47-SIRPα modulates immune evasion in a cobalt chloride (CoCl2)-induced hypoxic microenvironment of malignant gliomas. Human and mouse glioma cell lines were used to investigate immune evasion in vitro. After membrane protein extraction and nucleoplasmic isolation, we downregulated the expression levels of transport receptors to elucidate the regulation of CD47-SIRPα transport. The CoCl2-induced hypoxic microenvironment attenuated microglial phagocytosis in glioma cells. Enhanced CD47-SIRPα interaction promoted immune evasion, which negatively affected tumor clearance. In addition, the intracellular transport of CD47 was promoted in the CoCl2-induced hypoxic state. This process was regulated by regulator of chromosome condensation 1 (RCC1) and sortilin in the nuclear cytoplasm and cytoplasmic membrane, respectively. These results demonstrate the CD47-SIRPα-mediated immune escape mechanism of the CoCl2-induced glioma hypoxic environment, which is associated with enhanced intracellular transport of CD47. Our findings provide a theoretical basis for the potential development of novel therapies targeting CD47-SIRPα.

恶性胶质瘤免疫微环境中肿瘤相关巨噬细胞和小胶质细胞水平的升高会促进肿瘤的生长和进展。虽然免疫逃避与这些过程有关,但缺氧条件下 CD47-SIRPα 介导的免疫逃避的调控机制仍不清楚。因此,本研究旨在探索 CD47-SIRPα 在氯化钴(CoCl2)诱导的恶性胶质瘤缺氧微环境中调节免疫逃避的机制。人和小鼠胶质瘤细胞系被用来研究体外免疫逃避。经过膜蛋白提取和核质分离,我们下调了转运受体的表达水平,以阐明CD47-SIRPα转运的调控。CoCl2诱导的缺氧微环境削弱了胶质瘤细胞中小胶质细胞的吞噬作用。CD47-SIRPα相互作用的增强促进了免疫逃避,从而对肿瘤的清除产生了负面影响。此外,在CoCl2诱导的缺氧状态下,CD47的胞内转运也得到了促进。这一过程分别在核细胞质和细胞质膜上受到染色体凝聚调节因子 1(RCC1)和排序蛋白的调控。这些结果证明了CD47-SIRPα介导的神经胶质瘤缺氧环境免疫逃逸机制与CD47细胞内转运增强有关。我们的研究结果为开发针对CD47-SIRPα的新型疗法提供了理论依据。
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引用次数: 0
The prognostic value of microRNA-200 family expression in digestive system tumors: A meta-analysis and validation 消化系统肿瘤中 microRNA-200 家族表达的预后价值:荟萃分析与验证
Pub Date : 2024-08-19 DOI: 10.1002/mog2.86
Xiaoshuang Wu, Jinghua Heng, Mengxiang Li, Danxia Deng, Bingli Wu, Muting Wang, Sanqiang Li, Shegan Gao, Yijun Qi, Enmin Li

The relevance of miR-200 family in the prognosis of digestive system tumors remains controversial. Through a systematic review of the pertinent literature using online databases including PubMed, EMBASE, The Cochrane Library, and Web of Science, our pooled-analysis revealed that miR-200 family downregulation was significantly correlated with poor overall survival (OS, hazard ratio [HR] > 1) and disease-free survival (HR > 1) in digestive malignancies. Consistently, subgroup analyzes of various organ tissues, univariate analysis, gastric cancer, pancreatic cancer, and patients of American descent revealed the hazardous effects of miR-200 family downregulation. In contrast, low miR-200 family expression in blood samples predicted favorable OS (HR < 1). Moreover, lower expression levels of miR-200c-5p and miR-429 were validated in esophageal squamous cell carcinoma (ESCC) tissues. Both the protein and messenger RNA expression levels of Paralemmin-2 (PALM2) and Mitotic Arrest Deficient 2-Like Protein (MAD2L1), regulated by miR-200c-5p, were notably higher in ESCC, and increased protein levels of PALM2 and MAD2L1 were correlated with adverse OS. PALM2 overexpression significantly enhanced ESCC cell migration. In conclusion, our study highlights the prognostic value of miR-200 family in digestive system tumors, and the decrease of miR-200c-5p may promote ESCC invasion through upregulation of PALM2 and MAD2L1.

miR-200家族与消化系统肿瘤预后的相关性仍存在争议。通过使用在线数据库(包括PubMed、EMBASE、The Cochrane Library和Web of Science)对相关文献进行系统回顾,我们的汇总分析发现,在消化系统恶性肿瘤中,miR-200家族下调与总生存期(OS,危险比[HR] >1)和无病生存期(HR >1)差显著相关。同样,对不同器官组织、单变量分析、胃癌、胰腺癌和美国血统患者进行的亚组分析表明,miR-200家族下调具有危害性。相比之下,血液样本中 miR-200 家族的低表达预示着良好的 OS(HR <1)。此外,miR-200c-5p 和 miR-429 在食管鳞状细胞癌(ESCC)组织中较低的表达水平也得到了验证。受 miR-200c-5p 调控的 Paralemmin-2 (PALM2) 和有丝分裂停滞缺陷 2 类蛋白 (MAD2L1) 的蛋白和信使 RNA 表达水平在 ESCC 中明显较高,而 PALM2 和 MAD2L1 蛋白水平的升高与不良 OS 相关。PALM2的过表达能显著增强ESCC细胞的迁移。总之,我们的研究强调了miR-200家族在消化系统肿瘤中的预后价值,miR-200c-5p的减少可能会通过上调PALM2和MAD2L1促进ESCC的侵袭。
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引用次数: 0
Enhancing cancer immunotherapy and antiangiogenic therapy by regulating gut microbes: Opportunities and challenges 通过调节肠道微生物加强癌症免疫疗法和抗血管生成疗法:机遇与挑战
Pub Date : 2024-08-08 DOI: 10.1002/mog2.85
Jie Xu, Yaomei Tian, Die Hu, Xi Yan, Li Yang

As the largest microecosystem in the human body, gut microbes (GMs) and their metabolites play an important role in regulating human health. In recent years, immune checkpoint therapy (ICT) combined with antiangiogenic agents is an emerging combination therapy for cancer. There is growing evidence that GMs can affect the effectiveness of drugs to treat cancer. GMs not only regulate angiogenesis in the tumor microenvironment, but also influence the efficacy of immune checkpoint inhibitors. Many studies show that Bifidobacterium can upregulate the anticancer function of immune checkpoint blockers. In addition, GMs have been found to be involved in the formation of blood vessels and other developmental processes. Clinically, GMs are believed to play a key role in patients receiving antiangiogenic therapy and ICT. In this perspective, we provide an overview of the composition and function of the gut microbiome, and discuss the role of the GMs against the conditioning of angiogenic therapy and ICT. We also summarize new approaches and clinical translational trials using GMs for cancer therapy, and present opportunities and challenges for targeting GMs for cancer therapy in the future.

作为人体内最大的微生态系统,肠道微生物及其代谢产物在调节人体健康方面发挥着重要作用。近年来,免疫检查点疗法(ICT)与抗血管生成药物相结合是一种新兴的癌症联合疗法。越来越多的证据表明,基因改造物质会影响治疗癌症药物的效果。转基因不仅能调节肿瘤微环境中的血管生成,还能影响免疫检查点抑制剂的疗效。许多研究表明,双歧杆菌可以上调免疫检查点阻断剂的抗癌功能。此外,研究还发现转基因参与了血管的形成和其他发育过程。在临床上,GMs 被认为在接受抗血管生成治疗和 ICT 的患者中发挥着关键作用。在本视角中,我们概述了肠道微生物组的组成和功能,并讨论了 GMs 在抗血管生成疗法和 ICT 的调节中的作用。我们还总结了利用全球机制治疗癌症的新方法和临床转化试验,并提出了未来针对全球机制治疗癌症的机遇和挑战。
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引用次数: 0
Early prediction of neoadjuvant chemotherapy efficacy for mass breast cancer based on dynamic contrast-enhanced magnetic resonance imaging radiomics 基于动态对比增强磁共振成像放射组学的肿块型乳腺癌新辅助化疗疗效的早期预测
Pub Date : 2024-07-29 DOI: 10.1002/mog2.84
Pei-Wei Cao, Xue-Ying Deng, Yue-Peng Pan, Shuai-Ming Nan, Chang Yu

Radiomics uses automated algorithms to extract high-order features from images, which can contribute to clinical decisions such as therapeutic efficacy evaluation. We assessed the value of a dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI)-based radiomics model for predicting pathological complete response (pCR) after a second cycle of neoadjuvant chemotherapy (NAC) in patients with mass breast cancer. We retrospectively analyzed data from 149 patients with mass breast cancer who underwent NAC between January 2017 and December 2022. Using DCE-MRI, before NAC and after a second cycle of NAC, the least absolute shrinkage and selection operator and logistic regression (LR) algorithms were applied for feature selection and radiomics modeling. We found significant differences in two clinical imaging features (molecular subtypes, background parenchymal enhancement changes) and two radiomics features. Clinical and radiomics features were employed to build clinical, radiomics, and combined models to predict pCR. The LR model that combined clinical and radiomics features had an area under the curve of 0.811, higher than that for the imaging or radiomics model. Our findings suggest that a combined model based on imaging and radiomics features can improve early prediction of NAC efficacy for patients with mass breast cancer.

放射组学利用自动算法从图像中提取高阶特征,有助于临床决策,如疗效评估。我们评估了基于动态对比增强磁共振成像(DCE-MRI)的放射组学模型在预测肿块型乳腺癌患者第二周期新辅助化疗(NAC)后病理完全反应(pCR)方面的价值。我们回顾性分析了2017年1月至2022年12月期间接受新辅助化疗的149例肿块型乳腺癌患者的数据。使用DCE-MRI,在NAC之前和第二周期NAC之后,应用最小绝对收缩和选择算子以及逻辑回归(LR)算法进行特征选择和放射组学建模。我们发现两个临床成像特征(分子亚型、背景实质增强变化)和两个放射组学特征存在明显差异。我们利用临床和放射组学特征建立了临床、放射组学和综合模型来预测 pCR。结合临床和放射组学特征的LR模型的曲线下面积为0.811,高于成像或放射组学模型。我们的研究结果表明,基于影像学和放射组学特征的联合模型可以提高对肿块型乳腺癌患者的 NAC 疗效的早期预测。
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引用次数: 0
Alanyl-tRNA synthetase AARS1: A novel lactate sensor and lactyltransferase mediating p53 lactylation and tumorigenesis 丙氨酰-tRNA合成酶AARS1:一种新型乳酸传感器和乳酸转移酶,介导p53乳酸化和肿瘤发生
Pub Date : 2024-07-24 DOI: 10.1002/mog2.83
Qiqing Yang, Heyu Li, Long Zhang

In a recent study published in Cell, Zong et al. discovered that alanyl-tRNA synthetase 1 (AARS1) senses the accumulated lactate and subsequently facilitates global lysine lactylation in tumor cells.1 Furthermore, they found that p53 is a crucial target protein of AARS1-mediated lactylation. Due to the structural similarity between lactate and l-alanine, AARS1 has the capability to directly bind to lactate and transfer it to the K120 and K139 residues of p53 under conditions involving ATP consumption. The lactylation of p53 impairs its DNA binding, liquid–liquid phase separation (LLPS), and transcriptional activation ability, ultimately promoting cancer progression. Additionally, the study revealed that β-alanine inhibits the binding of AARS1 to lactate, suggesting potential implications for cancer treatment. This study identified a novel lactate sensor and lactyltransferase, opening new avenues for furture research on lactylation.

In 2019, Zhang et al. reported that lactate, which is a byproduct of glycolysis, can modify histones by lactylation.2 The Warburg effect explains how the tumor cells rely on glycolysis as the primary energy source, causing accumulation of high lactate levels. Besides, the acidic intratumoral environment causes protein lactylation, ultimately altering the functions of many proteins, promoting cancer progression. As our understanding of lactylation has increased, numerous “readers” and “erasers” of lactylation have been identified.3, 4 However, few “writers” of lactylation have been reported. In an effort to fill this gap in knowledge, Zong et al. discovered AARS1 as a novel lactyltransferase responsible for mediating global lactylation in cancer cells. Their findings highlight how AARS1 links cell metabolism with proteome alteration and plays a role in regulating carcinogenesis. Overall, this study shed light on the intricate relationship between energy metabolism and protein lactylation in cancer cells and provide valuable insights into potential targets for cancer therapeutic intervention.

When evaluating the TCGA breast cancer data set, Zong et al. found that intratumoral lactate may inhibit p53 functions. Furthermore, intratumoral lactate accumulation was closely associated with cancer progression in a mouse model of mammary tumor virus-polyoma middle T antigen transgenic breast cancer. To investigate the role of lactate in vivo, Zong et al. injected mice intraperitoneally with sodium lactate and observed that p53 activity was significantly inhibited in cancer cells. Moreover, knocking out lactate dehydrogenase A in mice resulted in reduced levels of intratumoral lactate and increased p53 activity. To determine whether lactate directly antagonized p53 functions in vitro, Zong et al. used a cell-free system based on luciferase fragment complementation assay to measure p53 activity. They found that tumor cells co

在最近发表于《细胞》(Cell)的一项研究中,Zong 等人发现丙氨酰-tRNA 合成酶 1(AARS1)能感知积累的乳酸,进而促进肿瘤细胞中赖氨酸的全局乳化作用。由于乳酸和丙氨酸结构相似,AARS1 能够直接与乳酸结合,并在消耗 ATP 的条件下将其转移到 p53 的 K120 和 K139 残基上。p53 的乳酸化会损害其 DNA 结合、液相分离(LLPS)和转录激活能力,最终促进癌症进展。此外,研究还发现,β-丙氨酸能抑制 AARS1 与乳酸的结合,这对癌症治疗具有潜在的意义。这项研究发现了一种新型乳酸传感器和乳酸转移酶,为今后的乳酸化研究开辟了新途径。2019年,Zhang等人报道,作为糖酵解副产物的乳酸可通过乳酸化作用修饰组蛋白。此外,瘤内酸性环境会导致蛋白质乳化,最终改变许多蛋白质的功能,促进癌症进展。随着我们对乳化作用认识的加深,发现了许多乳化作用的 "阅读者 "和 "清除者"。为了填补这一知识空白,Zong 等人发现 AARS1 是一种新型乳化转移酶,负责介导癌细胞中的全局乳化作用。他们的研究结果强调了 AARS1 如何将细胞代谢与蛋白质组改变联系起来,并在调控致癌过程中发挥作用。总之,这项研究揭示了癌细胞中能量代谢与蛋白质乳化之间错综复杂的关系,并为癌症治疗干预的潜在靶点提供了有价值的见解。在评估 TCGA 乳腺癌数据集时,Zong 等人发现瘤内乳酸可能会抑制 p53 的功能。此外,在乳腺肿瘤病毒-多瘤中T抗原转基因乳腺癌小鼠模型中,瘤内乳酸堆积与癌症进展密切相关。为了研究乳酸在体内的作用,Zong 等人给小鼠腹腔注射乳酸钠,观察到 p53 活性在癌细胞中受到显著抑制。此外,敲除小鼠体内的乳酸脱氢酶 A 会导致瘤内乳酸水平降低和 p53 活性增强。为了确定乳酸是否能在体外直接拮抗 p53 的功能,Zong 等人使用了基于荧光素酶片段互补试验的无细胞系统来测量 p53 的活性。为了确定参与介导 p53 乳酸化的蛋白质,Zong 等人进行了全基因组 CRISPR 筛选,结果发现 AARS1 是与乳酸化最密切相关的蛋白。去除了 AARS1 后,肿瘤增殖和集落形成显著减少,而 p53 及其靶蛋白的表达水平却增加了。随后,Zong 等人利用蛋白质组学分析了 AARS1 敲除或过表达后的全球赖氨酸乳化组,从而确定 AARS1 是细胞赖氨酸乳化的关键分子。为了阐明 AARS1 介导乳化的机制,Zong 等人通过微尺度热泳初步确定 AARS1 以乳酸为底物直接催化乳化。随后,分子对接发现 AARS1 可通过其保守残基直接与乳酸结合。这种结合受到与乳酸盐结构相似的β-丙氨酸的抑制。AARS1 以一种 ATP 依赖性方式催化乳酸-AMP 中间体的形成,然后将乳酸转移到目标蛋白质的赖氨酸残基上共价结合(图 1)。为了进一步研究 AARS1 如何调控 p53 的功能,Zong 等人利用质谱分析发现,位于 p53 DNA 结合域的 K120 和 K139 残基可被 AARS1 乳化。此外,使用位点特异性抗体也证实了内源性 p53 在这些残基上的乳化作用。P53 是一种众所周知的肿瘤抑制因子,它与含有 p53 响应元件的 DNA 结合后,通过 LLPS 发挥抗肿瘤作用(图 1)。
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引用次数: 0
Next-generation sequencing identifies that protein tyrosine phosphatase receptor type D mutation is favorable to immunotherapy in human cancer 下一代测序发现蛋白酪氨酸磷酸酶受体D型突变有利于人类癌症的免疫疗法
Pub Date : 2024-07-07 DOI: 10.1002/mog2.80
Yongsheng Huang, Jianwei Liao, Ming Gao, Sha Fu, Faya Liang, Yuanling Jiang, Jiahuan Luo, Jinghua Huang, Ni Tan, Danlan Wang, Xinke Yin, Shuwei Ren, Peiliang Lin, Renhui Chen, Ping Han, Xiaoming Huang, Nengtai Ouyang

Protein tyrosine phosphatase receptors (PTPRs) play a crucial part in numerous tumor processes. However, the effect of PTPR mutations on the immune checkpoint inhibitor (ICI) response needs to be further clarified. Next-generation sequencing was performed on 453 cancer patients in our internal cohort. The genomic alterations, tumor mutation burden (TMB), neoantigens, and immune-related features/pathways of other cohorts were analyzed. Here, protein tyrosine phosphatase receptor type D (PTPRD) has a high mutation frequency and an intensified co-occurrence with other PTPRs. Patients who responded to ICI therapy were enriched with the PTPRD mutation (PTPRD-MUT). PTPRD-MUT patients had a higher objective response rate (44.1% vs. 29.1%), TMB/neoantigens, and longer overall survival time than PTPRD-wild-type (PTPRD-WT) patients. Genomic alterations with a higher mutation frequency of genes (such as LRP1B) were enriched in PTPRD-MUT patients. More abundant immune cells (including CD8+ T cells and macrophages) and upregulated immune-related genes were found in PTPRD-MUT patients. Moreover, Gene sets enrichment analyses showed that multiple antitumor immune pathways are activated in PTPRD-MUT patients. Therefore, PTPRD-MUT is beneficial for immunotherapy of multiple cancer types and may be a predictive biomarker of patient clinical outcomes.

蛋白酪氨酸磷酸酶受体(PTPR)在众多肿瘤过程中发挥着至关重要的作用。然而,PTPR突变对免疫检查点抑制剂(ICI)反应的影响还有待进一步阐明。我们对内部队列中的453名癌症患者进行了新一代测序。对其他队列的基因组改变、肿瘤突变负荷(TMB)、新抗原和免疫相关特征/途径进行了分析。其中,D型蛋白酪氨酸磷酸酶受体(PTPRD)的突变频率较高,且与其他PTPRs的共存性更强。对 ICI 疗法有反应的患者富含 PTPRD 突变(PTPRD-MUT)。与PTPRD-Wild型(PTPRD-WT)患者相比,PTPRD-MUT患者的客观反应率(44.1% vs. 29.1%)、TMB/新抗原更高,总生存时间更长。PTPRD-MUT患者的基因组改变较多,基因突变频率较高(如LRP1B)。在 PTPRD-MUT 患者中发现了更多的免疫细胞(包括 CD8+ T 细胞和巨噬细胞)和上调的免疫相关基因。此外,基因组富集分析表明,PTPRD-MUT 患者的多种抗肿瘤免疫通路被激活。因此,PTPRD-MUT 有利于多种癌症类型的免疫治疗,并可能成为患者临床预后的预测性生物标志物。
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引用次数: 0
Clinical homologous recombination repair gene reversion analysis identifies mechanisms of resistance to PARP inhibitors and platinum-chemotherapy 临床同源重组修复基因还原分析确定了 PARP 抑制剂和铂化疗的抗药性机制
Pub Date : 2024-06-24 DOI: 10.1002/mog2.79
Yan Jia, Qiong Yang, Yutong Ma, Miaofang Wu, Qiuxiang Ou, Zhongqiu Lin, Yunyu Wu, Jing Li

Identifying mechanisms underlying cancer resistance to therapy is vital for advancing treatment strategies. Pathogenic mutations of homologous recombination repair (HRR) genes are known biomarkers for platinum (Pt)-based chemotherapy and poly ADP ribose polymerase inhibitors (PARPi) effectiveness. Yet, the dynamics of HRR reversion mutations, which may herald therapy resistance, are not fully elucidated. Addressing this gap, our study analyzed secondary HRR gene mutations in a comprehensive pan-cancer data set of approximately 13,000 patients who underwent targeted next-generation sequencing. We identified a subset of patients harboring secondary mutations, which were further categorized into three tiers based on their nature, and occur in the presence of a primary pathogenic mutation, notably in BRCA1, BRCA2, PALB2, and RAD51D genes. Here we show that secondary BRCA2 mutations, indicative of adaptive resistance, emerge post-Pt/Olaparib treatment. This challenges the prevailing notion that pathogenic HRR mutations uniformly predict therapeutic sensitivity, highlighting a nuanced genetic interplay that impacts treatment success. This investigation enriches our understanding of cancer's adaptive mechanisms against therapy, suggesting a pivotal shift towards more personalized, dynamic treatment strategies. It underscores the imperative of adapting to cancer's genetic evolution, aiming for a step ahead in the ongoing battle against this disease.

确定癌症耐药性的内在机制对于推进治疗策略至关重要。同源重组修复(HRR)基因的致病突变是铂类化疗和聚ADP核糖聚合酶抑制剂(PARPi)疗效的已知生物标志物。然而,可能预示着耐药性的HRR逆转突变的动态变化尚未完全阐明。为了填补这一空白,我们的研究分析了约13000名接受了下一代靶向测序的患者的泛癌症综合数据集中的继发性HRR基因突变。我们确定了携带继发性突变的患者子集,根据其性质进一步将其分为三层,并在存在原发性致病突变的情况下发生,特别是在 BRCA1、BRCA2、PALB2 和 RAD51D 基因中。在这里,我们发现在Pt/Olaparib治疗后会出现继发性BRCA2突变,这表明存在适应性抗药性。这挑战了致病性 HRR 突变可统一预测治疗敏感性的普遍观点,突出了影响治疗成功的微妙基因相互作用。这项研究丰富了我们对癌症适应性治疗机制的认识,表明了向更个性化、动态治疗策略的关键转变。它强调了适应癌症基因演变的必要性,目的是在与这种疾病的持续斗争中领先一步。
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引用次数: 0
Targeting werner helicase with synthetic lethality in microsatellite instability cancers: Promising therapeutic approaches 在微卫星不稳定性癌症中靶向具有合成致死性的维尔纳螺旋酶:有前景的治疗方法
Pub Date : 2024-06-12 DOI: 10.1002/mog2.82
Huanzhang Xie, Jing Zhang

Two recent companion papers published in Nature have reported two promising drug candidates, HRO7611 and VVD-133214,2 for microsatellite instability (MSI) cancers targeting the werner syndrome RecQ helicase (WRN), a synthetic lethal target in cancer cells with MSI. Currently, both candidates are undergoing clinical trials to evaluate their safety, tolerability, and preliminary antitumor activity in MSI patients.

Microsatellites, also known as short tandem repeats, are susceptible to slippage errors during replication, rendering them heavily reliant on the DNA mismatch repair (MMR) system. MMR deficiency results in widespread MSI by failing to correct replication errors, thus initiating cancer via aberrant tumor suppressor gene function. The prevalence of MSI ranges from 10% to 30% across multiple cancer types, such as colorectal, endometrial, ovarian, and gastric cancers.1-3 In MSI tumors, deficiencies in MMR mechanisms heighten genomic instability, prompting the activation of alternative DNA repair pathways, including those implicating WRN. Inhibitors targeting WRN in MSI cancer cells, which already possess compromised DNA repair mechanisms, may induce synthetic lethality, thereby triggering DNA damage and subsequent cancer cell death. This targeted approach is ineffective against normal or microsatellite instability (MSS) cells, as their MMR mechanisms remain intact. Hence, WRN inhibitors emerge as a highly promising synthetic lethal agent, with the potential to selectively eradicate tumor cells while sparing normal cells (Figure 1A).

Novartis researchers reported HRO761,1 a novel WRN helicase inhibitor (Figure 1B) which targets the ATPase of WRN as a noncovalent inhibitor. Cocrystal structures of HRO761 with WRN helicase revealed its binding to a nonconserved site at the D1–D2 interface, immobilizing WRN in an inactive conformation with an approximate 180° rotation relative to the adenosine triphosphate (ATP)-bound conformation (Figure 1C). Despite its 702 Da molecular weight, HRO761 displayed favorable physicochemical properties and pharmacokinetics (PK), with a clean off-target profile. In vitro cellular assays showed that HRO761 exhibits an IC50 of 100 nM in ATPase assays at high ATP concentration, effectively impairing the viability of MSI cancer cells, while showing no effect in MSS cells. Furthermore, characterization of HRO761 treatment effects on MSI cells revealed time- and dose-dependent cell cycle arrest and DNA damage, regardless of p53 mutation status. In the SW48 cell-derived xenografts (CDX) model, oral administration of 15–60 mg/kg HRO761 resulted in significant tumor regression without observed toxicity. Additionally, combination therapy involving HRO761 with other antitumor drugs may enhance treatment efficacy and reduce side effects and resistance. In vivo studies show complete tumor regression with combi

最近发表在《自然》(Nature)杂志上的两篇论文报告了两种很有前景的候选药物:HRO7611 和 VVD-1332142 ,这两种药物针对的是沃纳综合征 RecQ 螺旋酶(WRN),这是 MSI 癌细胞中的一个合成致死靶点,用于治疗微卫星不稳定(MSI)癌症。目前,这两种候选药物都在进行临床试验,以评估它们在 MSI 患者中的安全性、耐受性和初步抗肿瘤活性。微卫星又称短串联重复序列,在复制过程中容易出现滑动错误,因此严重依赖 DNA 错配修复(MMR)系统。MMR 缺乏会导致无法纠正复制错误,从而导致广泛的 MSI,进而通过肿瘤抑制基因的异常功能引发癌症。在多种癌症类型中,如结直肠癌、子宫内膜癌、卵巢癌和胃癌,MSI 的发病率从 10% 到 30% 不等。1-3 在 MSI 肿瘤中,MMR 机制的缺陷增加了基因组的不稳定性,促使替代 DNA 修复途径(包括与 WRN 有关的途径)被激活。MSI 癌细胞的 DNA 修复机制已经受损,针对 WRN 的抑制剂可能会诱导合成致死,从而引发 DNA 损伤并导致癌细胞死亡。这种靶向方法对正常细胞或微卫星不稳定(MSS)细胞无效,因为它们的 MMR 机制仍然完好。因此,WRN 抑制剂成为一种极具前景的合成致死剂,它有可能选择性地消灭肿瘤细胞,而放过正常细胞(图 1A)。诺华公司的研究人员报告了一种新型 WRN 螺旋酶抑制剂 HRO7611(图 1B),它以 WRN 的 ATP 酶为靶点,是一种非共价抑制剂。HRO761 与 WRN 螺旋酶的共晶体结构显示,HRO761 与 D1-D2 界面的一个非保留位点结合,将 WRN 固定在一个非活性构象中,相对于三磷酸腺苷(ATP)结合构象旋转了大约 180°(图 1C)。尽管 HRO761 的分子量为 702 Da,但它显示出良好的理化特性和药代动力学(PK),而且没有脱靶现象。体外细胞实验显示,在高浓度 ATP 的 ATPase 实验中,HRO761 的 IC50 值为 100 nM,可有效降低 MSI 癌细胞的活力,而对 MSS 细胞则无影响。此外,HRO761 对 MSI 细胞的处理效果表征显示,细胞周期停滞和 DNA 损伤与时间和剂量有关,与 p53 突变状态无关。在 SW48 细胞衍生异种移植(CDX)模型中,口服 15-60 mg/kg HRO761 可使肿瘤显著消退,且无明显毒性。此外,HRO761与其他抗肿瘤药物的联合治疗可提高疗效,减少副作用和耐药性。体内研究显示,HRO761 与伊立替康联合治疗可使肿瘤完全消退,且不影响体重。因此,目前正在进行 NCT05838768 临床试验,以探索 HRO761 与伊立替康或替舒利珠单抗联用时的协同效应。2 与 HRO761 不同,VVD-133214 是一种不可逆的共价抑制剂。2 与 HRO761 不同,VVD-133214 是一种不可逆的共价抑制剂。共晶分析表明,VVD-133214 可与二磷酸腺苷(ADP)同时结合到 ATPase 结构域,与 C727 的硫原子形成共价键(图 1C)。VVD-133214 具有 ADP 协同作用,与 ADP 预孵育时的 IC50 值为 3 μM,而无 ADP 时的 IC50 值为 0.1 μM。体外研究显示,VVD-133214 对近 80% 的 MSI-高(MSI-H)细胞系(14 个细胞系中的 11 个)具有敏感性,而 MSS 细胞系则没有反应。口服 VVD-133214 的剂量≥5 毫克/千克,每天一次,可实现几乎完全(约 95%)的肿瘤靶点参与。值得注意的是,VVD-133214 在七种不同的 MSI-H 结直肠癌患者衍生异种移植(PDX)模型中的六种都显示出了降低肿瘤负荷的疗效,包括那些 p53 突变的模型。与不加区分地针对快速分裂细胞的传统疗法不同,合成致死疗法利用基因差异,选择性地消灭具有特定突变的肿瘤细胞,同时保留正常细胞。2014 年,阿斯利康的 PARP 抑制剂 olaparib 成为首个获得 FDA 批准的合成致死抑制剂,用于治疗乳腺癌易感基因突变的卵巢癌,标志着合成致死疗法开始用于癌症治疗。
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