Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000939
Andrew Cannon, Rofyda Elhalaby, Igor Ban, Sheeno Thyparambil, Joe Abdo, Catherine E Hagen, Christopher P Hartley
Introduction: Esophageal adenocarcinoma (EAC) is an aggressive cancer with poor prognosis. Barrett's esophagus (BE) is a critical precursor of EAC. Patients with BE undergo endoscopic surveillance to monitor disease progression although only a small fraction develop EAC. These procedures are invasive and have limited accuracy in predicting BE progression. We evaluated the utility of an 8-protein mass spectrometry panel in predicting progression in patients with BE.
Methods: Eighty untreated controls and 20 cases were selected from our institutional tissue registry. Quantitative mass-spectrometry was performed on microdissected tissue sections. Data were split into 80% training and 20% test sets. We used Least Absolute Shrinkage and Selection Operator-regularized regression to train a logistic classifier on training data. Classifier performance was evaluated in test data.
Results: Ninety-two samples had sufficient tissue for mass spectrometry analysis (18 progressors, 74 nonprogressors). The multivariable regression model produced a sensitivity of 100% and a specificity of 39% in the overall cohort, with AUCs of 0.75 and 0.89 in the overall and test cohorts, respectively. Cox proportional hazards time-to-progression (TTP) showed a hazard ratio of 66.1 (95% CI 7.79-561, P = 0.00012) for the model prediction.
Discussion: The promising performance of the model generated here suggests that the test may aid in selecting patients most likely to benefit from active BE surveillance. Moreover, the association of this model's prediction with time-to-progression may offer decision support for management of patients likely to progress quickly. These results support continued development of this proteomic panel as a risk stratification tool for patients with BE.
食管腺癌(EAC)是一种侵袭性肿瘤,预后较差。巴雷特食管(BE)是EAC的重要前兆。BE患者接受内镜监测以监测疾病进展,即使只有一小部分发展为EAC。这些手术是侵入性的,预测BE进展的准确性有限。我们评估了8蛋白质谱分析在预测BE患者进展方面的效用。方法:80例未经治疗的对照和20例来自我们的机构组织登记。显微解剖组织切片进行定量质谱分析。数据被分成80%的训练集和20%的测试集。我们使用最小绝对收缩和选择算子正则化(LASSO)回归在训练数据上训练逻辑分类器。在测试数据中对分类器的性能进行了评价。结果:92份样本有足够的组织进行质谱分析(18例进展者,74例非进展者)。多变量回归模型在整个队列中的敏感性为100%,特异性为39%,在整个队列和测试队列中的auc分别为0.75和0.89。Cox比例风险-进展时间(TTP)显示模型预测的风险比为66.1 (95% CI 7.79-561, p=0.00012)。结论:这里生成的模型的良好性能表明,该测试可能有助于选择最有可能从主动BE监测中受益的患者。此外,该模型的预测与TTP的关联可能为可能快速进展的患者的管理提供决策支持。这些结果支持继续开发这种蛋白质组学面板作为BE患者的风险分层工具。
{"title":"Assessing Risk of Progression in Barrett's Esophagus Using a Mass-Spectrometry-Based Proteomic Panel.","authors":"Andrew Cannon, Rofyda Elhalaby, Igor Ban, Sheeno Thyparambil, Joe Abdo, Catherine E Hagen, Christopher P Hartley","doi":"10.14309/ctg.0000000000000939","DOIUrl":"10.14309/ctg.0000000000000939","url":null,"abstract":"<p><strong>Introduction: </strong>Esophageal adenocarcinoma (EAC) is an aggressive cancer with poor prognosis. Barrett's esophagus (BE) is a critical precursor of EAC. Patients with BE undergo endoscopic surveillance to monitor disease progression although only a small fraction develop EAC. These procedures are invasive and have limited accuracy in predicting BE progression. We evaluated the utility of an 8-protein mass spectrometry panel in predicting progression in patients with BE.</p><p><strong>Methods: </strong>Eighty untreated controls and 20 cases were selected from our institutional tissue registry. Quantitative mass-spectrometry was performed on microdissected tissue sections. Data were split into 80% training and 20% test sets. We used Least Absolute Shrinkage and Selection Operator-regularized regression to train a logistic classifier on training data. Classifier performance was evaluated in test data.</p><p><strong>Results: </strong>Ninety-two samples had sufficient tissue for mass spectrometry analysis (18 progressors, 74 nonprogressors). The multivariable regression model produced a sensitivity of 100% and a specificity of 39% in the overall cohort, with AUCs of 0.75 and 0.89 in the overall and test cohorts, respectively. Cox proportional hazards time-to-progression (TTP) showed a hazard ratio of 66.1 (95% CI 7.79-561, P = 0.00012) for the model prediction.</p><p><strong>Discussion: </strong>The promising performance of the model generated here suggests that the test may aid in selecting patients most likely to benefit from active BE surveillance. Moreover, the association of this model's prediction with time-to-progression may offer decision support for management of patients likely to progress quickly. These results support continued development of this proteomic panel as a risk stratification tool for patients with BE.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00939"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727366/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145353760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000943
Wojciech Marlicz, Anastasios Koulaouzidis
{"title":"Critical Appraisal of Novel AI Systems in Detecting Adenomas in Colonoscopy.","authors":"Wojciech Marlicz, Anastasios Koulaouzidis","doi":"10.14309/ctg.0000000000000943","DOIUrl":"10.14309/ctg.0000000000000943","url":null,"abstract":"","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00943"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727281/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145667308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000935
Hassan Asif, Muhammad Talha Kakar, Beesham Kumar, Asfand Yar, Anjlee Parkash, Wadana Malik, Nikil Kumar, Shah Zaman, Rabia Safdar, Muhammad Huzaifa Ijaz, Mohammad Jawwad
{"title":"Response to Kumar et al.","authors":"Hassan Asif, Muhammad Talha Kakar, Beesham Kumar, Asfand Yar, Anjlee Parkash, Wadana Malik, Nikil Kumar, Shah Zaman, Rabia Safdar, Muhammad Huzaifa Ijaz, Mohammad Jawwad","doi":"10.14309/ctg.0000000000000935","DOIUrl":"10.14309/ctg.0000000000000935","url":null,"abstract":"","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00935"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727349/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145667354","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000922
Ryan Flanagan, Edward Hurtte, Mayssan Muftah, Brent Hiramoto, Jennifer X Cai, C Prakash Gyawali, Walter W Chan
Introduction: Clinically relevant esophagogastric junction metrics on functional lumen imaging probe (FLIP) in postfundoplication patients remain unclear.
Methods: Sixty-three symptomatic postfundoplication patients underwent FLIP, barium esophagram, and high-resolution manometry. Logistic regressions and receiver-operating characteristic curves for distensibility index (DI) at 60 mL and maximal diameter were generated to predict impaired clearance.
Results: Maximal diameter (odds ratio: 0.77, confidence interval: 0.62-0.96, P = 0.02, area under receiver-operating characteristic curve = 0.73), but not DI, independently predicted impaired clearance. Diameter >16.5 mm achieved >90% sensitivity for normal clearance; DI < 2.0 mm 2 /mm Hg and diameter <8 mm were >90% specific for impaired clearance.
Discussion: Maximal diameter on postfundoplication FLIP predicts impaired clearance and discriminates better than DI.
{"title":"Functional Lumen Imaging Probe Predictors of Esophageal Clearance in Symptomatic Postfundoplication Patients: Opening Diameter Has Greater Value Than Distensibility Index.","authors":"Ryan Flanagan, Edward Hurtte, Mayssan Muftah, Brent Hiramoto, Jennifer X Cai, C Prakash Gyawali, Walter W Chan","doi":"10.14309/ctg.0000000000000922","DOIUrl":"10.14309/ctg.0000000000000922","url":null,"abstract":"<p><strong>Introduction: </strong>Clinically relevant esophagogastric junction metrics on functional lumen imaging probe (FLIP) in postfundoplication patients remain unclear.</p><p><strong>Methods: </strong>Sixty-three symptomatic postfundoplication patients underwent FLIP, barium esophagram, and high-resolution manometry. Logistic regressions and receiver-operating characteristic curves for distensibility index (DI) at 60 mL and maximal diameter were generated to predict impaired clearance.</p><p><strong>Results: </strong>Maximal diameter (odds ratio: 0.77, confidence interval: 0.62-0.96, P = 0.02, area under receiver-operating characteristic curve = 0.73), but not DI, independently predicted impaired clearance. Diameter >16.5 mm achieved >90% sensitivity for normal clearance; DI < 2.0 mm 2 /mm Hg and diameter <8 mm were >90% specific for impaired clearance.</p><p><strong>Discussion: </strong>Maximal diameter on postfundoplication FLIP predicts impaired clearance and discriminates better than DI.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00922"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727239/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145085057","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000929
Jiafeng Zou, Yu Yan, Anguo Liu, Haoye Zhang, Zhenguo Liu
Introduction: Chitinase-3-like protein 1 (CHI3L1) is a glycoprotein involved in inflammation and fibrosis, but its association with nonalcoholic fatty liver disease (NAFLD) remains unclear. This study investigated the association between serum CHI3L1 levels and the risk of severe NAFLD in a large prospective cohort.
Methods: A prospective cohort study was conducted using UK Biobank data from 50,334 participants. Serum CHI3L1 levels were measured at baseline. Severe NAFLD cases were identified using hospital records. Cox proportional hazards models evaluated the association between CHI3L1 levels and severe NAFLD risk. Restricted cubic spline analysis assessed potential nonlinearity. Subgroup and mediation analyses were conducted to explore effect modifiers and underlying pathways.
Results: Over a median follow-up of 16 years, 766 severe NAFLD cases were identified. Higher CHI3L1 levels were significantly associated with increased severe NAFLD risk (hazard ratio 1.45, 95% confidence interval 1.34-1.58, P < 0.001). Restricted cubic spline analysis revealed a linear positive association without evidence of nonlinearity. Stratified analyses showed consistent associations across subgroups, with no significant interactions. Mediation analysis identified high-density lipoprotein cholesterol and alanine aminotransferase as partial mediators, explaining 6.38% and 2.86% of the total effect, respectively, whereas the direct effect of CHI3L1 remained dominant.
Discussion: Elevated CHI3L1 levels are associated with an increased risk of severe NAFLD. These findings suggest that CHI3L1 may serve as a novel biomarker and potential contributor to NAFLD progression, offering insights into the inflammatory and metabolic mechanisms underlying the disease.
几丁质酶-3样蛋白1 (CHI3L1)是一种参与炎症和纤维化的糖蛋白,但其与非酒精性脂肪性肝病(NAFLD)的关系尚不清楚。本研究在一个大型前瞻性队列中调查了血清CHI3L1水平与严重NAFLD风险之间的关系。方法:使用英国生物银行50334名参与者的数据进行前瞻性队列研究。基线时测定血清CHI3L1水平。根据医院记录确定严重NAFLD病例。Cox比例风险模型评估了CHI3L1水平与严重NAFLD风险之间的关系。限制三次样条(RCS)分析评估了潜在的非线性。通过亚组分析和中介分析来探讨影响因素和潜在途径。结果:在16年的中位随访中,确定了766例严重NAFLD病例。较高的CHI3L1水平与严重NAFLD风险增加显著相关(HR = 1.45, 95% CI: 1.34-1.58, P < 0.001)。RCS分析显示线性正相关,无非线性证据。分层分析显示,亚组之间存在一致的关联,没有显著的相互作用。中介分析发现HDL和ALT是部分中介,分别占总效应的6.38%和2.86%,而CHI3L1的直接作用仍然占主导地位。讨论:升高的CHI3L1水平与严重NAFLD的风险增加相关。这些发现表明,CHI3L1可能作为一种新的生物标志物和NAFLD进展的潜在因素,为了解该疾病的炎症和代谢机制提供了新的见解。
{"title":"Association Between Chitinase 3-Like Protein 1 and Severe Nonalcoholic Fatty Liver Disease: A Large Prospective Cohort Study in UK Biobank.","authors":"Jiafeng Zou, Yu Yan, Anguo Liu, Haoye Zhang, Zhenguo Liu","doi":"10.14309/ctg.0000000000000929","DOIUrl":"10.14309/ctg.0000000000000929","url":null,"abstract":"<p><strong>Introduction: </strong>Chitinase-3-like protein 1 (CHI3L1) is a glycoprotein involved in inflammation and fibrosis, but its association with nonalcoholic fatty liver disease (NAFLD) remains unclear. This study investigated the association between serum CHI3L1 levels and the risk of severe NAFLD in a large prospective cohort.</p><p><strong>Methods: </strong>A prospective cohort study was conducted using UK Biobank data from 50,334 participants. Serum CHI3L1 levels were measured at baseline. Severe NAFLD cases were identified using hospital records. Cox proportional hazards models evaluated the association between CHI3L1 levels and severe NAFLD risk. Restricted cubic spline analysis assessed potential nonlinearity. Subgroup and mediation analyses were conducted to explore effect modifiers and underlying pathways.</p><p><strong>Results: </strong>Over a median follow-up of 16 years, 766 severe NAFLD cases were identified. Higher CHI3L1 levels were significantly associated with increased severe NAFLD risk (hazard ratio 1.45, 95% confidence interval 1.34-1.58, P < 0.001). Restricted cubic spline analysis revealed a linear positive association without evidence of nonlinearity. Stratified analyses showed consistent associations across subgroups, with no significant interactions. Mediation analysis identified high-density lipoprotein cholesterol and alanine aminotransferase as partial mediators, explaining 6.38% and 2.86% of the total effect, respectively, whereas the direct effect of CHI3L1 remained dominant.</p><p><strong>Discussion: </strong>Elevated CHI3L1 levels are associated with an increased risk of severe NAFLD. These findings suggest that CHI3L1 may serve as a novel biomarker and potential contributor to NAFLD progression, offering insights into the inflammatory and metabolic mechanisms underlying the disease.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00929"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727357/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145205872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Introduction: Biomarkers to guide clinical decision making in active ulcerative colitis (UC) patients are urgently needed. This study aims to identify metabolites associated with UC treatment escalation and establish prediction models based on untargeted metabolomics and machine learning algorithms.
Methods: Liquid chromatography-mass spectrometry-based untargeted metabolomics analysis was performed on 88 plasma samples (44 active UC patients requiring treatment escalation and 44 active UC patients not requiring treatment escalation). Univariate and multivariate analyses were applied to identify metabolic biomarkers for UC treatment escalation. Metabolic pathway enrichment analysis was performed to reveal the disturbed metabolic pathways related to UC treatment escalation. Four machine learning algorithms, including Support Vector Machine, Random Forest, k-Nearest Neighbor, and logistic regression were used to build diagnostic models for UC treatment escalation.
Results: Nine significantly differential metabolites were identified as the candidate biomarkers for UC treatment escalation. Pathway analysis revealed that phenylalanine metabolism and ether lipid metabolism are the disturbed metabolic pathways related to treatment escalation. The protein-metabolite interaction network identified 21 proteins are associated with 9 treatment escalation related metabolites. The areas under the receiver operating characteristic curve of the Support Vector Machine, Random Forest, k-Nearest Neighbor, and logistic regression models based on metabolic biomarkers were 0.923, 0.966, 0.897 and 0.803, respectively.
Discussion: The plasma metabolome represents a promising source of biomarkers for the prediction of treatment escalation in active UC. Metabolic biomarkers, combined with machine learning algorithms, could be efficient for risk assessment and early identification of UC treatment escalation.
{"title":"Identification of Biomarkers for Treatment Escalation of Ulcerative Colitis Based on Untargeted Metabolomics and Machine Learning Algorithms: A Prospective Cohort Study.","authors":"Muzhou Han, Hao Wang, Siying Zhu, Peng Li, Haiyun Shi, Yongdong Wu","doi":"10.14309/ctg.0000000000000933","DOIUrl":"10.14309/ctg.0000000000000933","url":null,"abstract":"<p><strong>Introduction: </strong>Biomarkers to guide clinical decision making in active ulcerative colitis (UC) patients are urgently needed. This study aims to identify metabolites associated with UC treatment escalation and establish prediction models based on untargeted metabolomics and machine learning algorithms.</p><p><strong>Methods: </strong>Liquid chromatography-mass spectrometry-based untargeted metabolomics analysis was performed on 88 plasma samples (44 active UC patients requiring treatment escalation and 44 active UC patients not requiring treatment escalation). Univariate and multivariate analyses were applied to identify metabolic biomarkers for UC treatment escalation. Metabolic pathway enrichment analysis was performed to reveal the disturbed metabolic pathways related to UC treatment escalation. Four machine learning algorithms, including Support Vector Machine, Random Forest, k-Nearest Neighbor, and logistic regression were used to build diagnostic models for UC treatment escalation.</p><p><strong>Results: </strong>Nine significantly differential metabolites were identified as the candidate biomarkers for UC treatment escalation. Pathway analysis revealed that phenylalanine metabolism and ether lipid metabolism are the disturbed metabolic pathways related to treatment escalation. The protein-metabolite interaction network identified 21 proteins are associated with 9 treatment escalation related metabolites. The areas under the receiver operating characteristic curve of the Support Vector Machine, Random Forest, k-Nearest Neighbor, and logistic regression models based on metabolic biomarkers were 0.923, 0.966, 0.897 and 0.803, respectively.</p><p><strong>Discussion: </strong>The plasma metabolome represents a promising source of biomarkers for the prediction of treatment escalation in active UC. Metabolic biomarkers, combined with machine learning algorithms, could be efficient for risk assessment and early identification of UC treatment escalation.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00933"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727375/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145343963","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000928
Yael R Nobel, Heekuk Park, Alice M Tillman, Dwayne Seeram, Dalia H Moallem, Anna Intara, Renu Nandakumar, Medini K Annavajhala, Angela Gomez-Simmonds, Elizabeth C Verna, Anne-Catrin Uhlemann
Introduction: Early identification of hepatocellular carcinoma (HCC) is critical to reduce mortality. Diagnostic tools are limited for early disease. Intestinal microbiota may contribute to HCC risk directly and through metabolites, particularly bile acids (BAs), offering potential noninvasive biomarkers.
Methods: This was a case-control study of patients with cirrhosis with or without early-stage HCC, matched based on liver disease severity. Comprehensive analyses of fecal microbiota composition and function were performed.
Results: There were 98 patients in the study (49 patients per group). Subjects with HCC were older (median 64 vs 60 years, P < 0.01) and more likely to have hepatitis C (78% vs 43%, P < 0.01). Alpha diversity, beta diversity, and genes and pathways related to BA metabolism did not differ between groups overall, but alpha diversity did differ within the subset of patients with metabolic-associated steatotic liver disease. There was differential abundance of multiple taxa between groups, including higher abundance of Klebsiella pneumoniae in cases. Increased concentration of secondary BA, which are microbiota-dependent, was associated with higher odds of HCC (adjusted odds ratio 2.4, P = 0.02); however, addition of microbial or BA features to a model with clinical data alone did not improve HCC prediction.
Discussion: When accounting for liver disease severity, there were limited differences in intestinal microbiota composition and BA metabolism between subjects with or without early-stage HCC. Promising areas for future study of microbiota-based HCC biomarkers were identified, including a focus on the subpopulation of patients with metabolic-associated steatotic liver disease.
{"title":"Fecal Microbiota and Bile Acid Profiles in Early-Stage Hepatocellular Carcinoma: A Matched Case-Control Study.","authors":"Yael R Nobel, Heekuk Park, Alice M Tillman, Dwayne Seeram, Dalia H Moallem, Anna Intara, Renu Nandakumar, Medini K Annavajhala, Angela Gomez-Simmonds, Elizabeth C Verna, Anne-Catrin Uhlemann","doi":"10.14309/ctg.0000000000000928","DOIUrl":"10.14309/ctg.0000000000000928","url":null,"abstract":"<p><strong>Introduction: </strong>Early identification of hepatocellular carcinoma (HCC) is critical to reduce mortality. Diagnostic tools are limited for early disease. Intestinal microbiota may contribute to HCC risk directly and through metabolites, particularly bile acids (BAs), offering potential noninvasive biomarkers.</p><p><strong>Methods: </strong>This was a case-control study of patients with cirrhosis with or without early-stage HCC, matched based on liver disease severity. Comprehensive analyses of fecal microbiota composition and function were performed.</p><p><strong>Results: </strong>There were 98 patients in the study (49 patients per group). Subjects with HCC were older (median 64 vs 60 years, P < 0.01) and more likely to have hepatitis C (78% vs 43%, P < 0.01). Alpha diversity, beta diversity, and genes and pathways related to BA metabolism did not differ between groups overall, but alpha diversity did differ within the subset of patients with metabolic-associated steatotic liver disease. There was differential abundance of multiple taxa between groups, including higher abundance of Klebsiella pneumoniae in cases. Increased concentration of secondary BA, which are microbiota-dependent, was associated with higher odds of HCC (adjusted odds ratio 2.4, P = 0.02); however, addition of microbial or BA features to a model with clinical data alone did not improve HCC prediction.</p><p><strong>Discussion: </strong>When accounting for liver disease severity, there were limited differences in intestinal microbiota composition and BA metabolism between subjects with or without early-stage HCC. Promising areas for future study of microbiota-based HCC biomarkers were identified, including a focus on the subpopulation of patients with metabolic-associated steatotic liver disease.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00928"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727358/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145205879","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000934
Phunchai Charatcharoenwitthaya
{"title":"Response to Huang et al.","authors":"Phunchai Charatcharoenwitthaya","doi":"10.14309/ctg.0000000000000934","DOIUrl":"10.14309/ctg.0000000000000934","url":null,"abstract":"","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":"16 12","pages":"e00934"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727237/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145849055","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01DOI: 10.14309/ctg.0000000000000914
Zongyuan Che, Wei Xue, Xuchen Zhao, Congzhong Hu, Yanzhang Tian
Nonalcoholic fatty liver disease is the most prevalent chronic liver disease worldwide. It is now updated as metabolic dysfunction-associated steatotic liver disease (MASLD). The progression of MASLD to hepatocellular carcinoma (HCC) involves complex mechanisms, with the gut microbiota (GM) and its metabolites playing a pivotal role in this transformation through the "gut-liver axis." This review systematically summarizes the characteristics of GM dysbiosis in patients with MASLD and the regulatory mechanisms of its metabolites (e.g., short-chain fatty acids, secondary bile acids, trimethylamine N-oxide, and lipopolysaccharides) in the progression from MASLD to HCC. Short-chain fatty acids exert protective effects in the early stages by enhancing the intestinal barrier and modulating immune and metabolic responses. However, metabolic disturbances, such as the "paradoxical effect" of butyrate and the lipogenic effect of acetate, may promote the formation of a tumor microenvironment in the later stages. Secondary bile acids (e.g., deoxycholic acid) exacerbate liver fibrosis and carcinogenesis by activating inflammatory pathways (nuclear factor-κB and mitogen-activated protein kinase), inducing oxidative stress, and inhibiting foresaid X receptor signaling. Trimethylamine N-oxide directly drives HCC progression by activating the mitogen-activated protein kinase/nuclear factor-κB pathway, promoting epithelial-mesenchymal transition, and creating an immunosuppressive microenvironment. Lipopolysaccharide accelerates fibrosis and metabolic reprogramming through toll-like receptor 4-mediated chronic inflammation and hepatic stellate cell activation. This review highlights that the dynamic changes in GM metabolites are closely associated with MASLD-HCC progression. Specific monitoring of these metabolites may serve as potential biomarkers for early detection. Furthermore, gut-targeted therapies (e.g., fecal microbiota transplantation) have shown translational potential. Future studies are needed to further validate their clinical value and develop precise prevention and treatment strategies.
{"title":"Regulatory Role and Biomarker Potential of Gut Microbiota Metabolites in the Progression of Metabolic Dysfunction-Associated Steatotic Liver Disease to Hepatocellular Carcinoma.","authors":"Zongyuan Che, Wei Xue, Xuchen Zhao, Congzhong Hu, Yanzhang Tian","doi":"10.14309/ctg.0000000000000914","DOIUrl":"10.14309/ctg.0000000000000914","url":null,"abstract":"<p><p>Nonalcoholic fatty liver disease is the most prevalent chronic liver disease worldwide. It is now updated as metabolic dysfunction-associated steatotic liver disease (MASLD). The progression of MASLD to hepatocellular carcinoma (HCC) involves complex mechanisms, with the gut microbiota (GM) and its metabolites playing a pivotal role in this transformation through the \"gut-liver axis.\" This review systematically summarizes the characteristics of GM dysbiosis in patients with MASLD and the regulatory mechanisms of its metabolites (e.g., short-chain fatty acids, secondary bile acids, trimethylamine N-oxide, and lipopolysaccharides) in the progression from MASLD to HCC. Short-chain fatty acids exert protective effects in the early stages by enhancing the intestinal barrier and modulating immune and metabolic responses. However, metabolic disturbances, such as the \"paradoxical effect\" of butyrate and the lipogenic effect of acetate, may promote the formation of a tumor microenvironment in the later stages. Secondary bile acids (e.g., deoxycholic acid) exacerbate liver fibrosis and carcinogenesis by activating inflammatory pathways (nuclear factor-κB and mitogen-activated protein kinase), inducing oxidative stress, and inhibiting foresaid X receptor signaling. Trimethylamine N-oxide directly drives HCC progression by activating the mitogen-activated protein kinase/nuclear factor-κB pathway, promoting epithelial-mesenchymal transition, and creating an immunosuppressive microenvironment. Lipopolysaccharide accelerates fibrosis and metabolic reprogramming through toll-like receptor 4-mediated chronic inflammation and hepatic stellate cell activation. This review highlights that the dynamic changes in GM metabolites are closely associated with MASLD-HCC progression. Specific monitoring of these metabolites may serve as potential biomarkers for early detection. Furthermore, gut-targeted therapies (e.g., fecal microbiota transplantation) have shown translational potential. Future studies are needed to further validate their clinical value and develop precise prevention and treatment strategies.</p>","PeriodicalId":10278,"journal":{"name":"Clinical and Translational Gastroenterology","volume":" ","pages":"e00914"},"PeriodicalIF":3.0,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12727350/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144999843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}