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Generative artificial intelligence (AI) for reporting the performance of laboratory biomarkers: not ready for prime time. 用于报告实验室生物标志物性能的生成人工智能 (AI):尚未准备就绪。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-31 DOI: 10.1515/cclm-2024-0857
Laura Pighi, Davide Negrini, Giuseppe Lippi
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引用次数: 0
An ultrasensitive DNA-enhanced amplification method for detecting cfDNA drug-resistant mutations in non-small cell lung cancer with selective FEN-assisted degradation of dominant somatic fragments 通过选择性 FEN 辅助降解显性体细胞片段,检测非小细胞肺癌 cfDNA 耐药突变的超灵敏 DNA 增强扩增方法
IF 6.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-31 DOI: 10.1515/cclm-2024-0614
Junhua Zhang, Yifei Li, Wei Huang, Gaoyuan Sun, Hongjun Ren, Min Tang
Objectives Blood cell-free DNA (cfDNA) can be a new reliable tool for detecting epidermal growth factor receptor (EGFR) mutations in non-small cell lung cancer (NSCLC) patients. However, the currently reported cfDNA assays have a limited role in detecting drug-resistant mutations due to their deficiencies in sensitivity, stability, or mutation detection rate. Methods We developed an Archaeoglobus fulgidus-derived flap endonuclease (Afu FEN)-based DNA-enhanced amplification system of mutated cfDNA by designing a pair of hairpin probes to anneal with wild-type cfDNA to form two 5′-flaps, allowing for the specific cleavage of wild-type cfDNA by Afu FEN. When the dominant wild-type somatic cfDNA fragments were cleaved by structure-recognition-specific Afu FEN, the proportion of mutated cfDNA in the reaction system was greatly enriched. As the amount of mutated cfDNA in the system was further increased by PCR amplification, the mutation status could be easily detected through first-generation sequencing. Results In a mixture of synthetic wild-type and T790M EGFR DNA fragments, our new assay still could detect T790M mutation at the fg level with remarkably high sensitivity. We also tested its performance in detecting low variant allele frequency (VAF) mutations in clinical samples from NSCLC patients. The plasma cfDNA samples with low VAF (0.1 and 0.5 %) could be easily detected by DNA-enhanced amplification. Conclusions This system with enhanced amplification of mutated cfDNA is an effective tool used for the early screening and individualized targeted therapy of NSCLC by providing a rapid, sensitive, and economical way for the detection of drug-resistant mutations in tumors.
目的 血中无细胞DNA(cfDNA)是检测非小细胞肺癌(NSCLC)患者表皮生长因子受体(EGFR)突变的一种新的可靠工具。然而,由于灵敏度、稳定性或突变检测率方面的缺陷,目前报道的 cfDNA 检测方法在检测耐药突变方面的作用有限。方法 我们开发了一种基于Archaeoglobus fulgidus衍生的瓣膜内切酶(Afu FEN)的DNA增强扩增系统,通过设计一对发夹探针与野生型cfDNA退火形成两个5′瓣膜,使Afu FEN能特异性地裂解野生型cfDNA,从而扩增突变的cfDNA。当占优势的野生型体细胞 cfDNA 片段被结构识别特异性 Afu FEN 裂解时,反应体系中突变的 cfDNA 比例大大增加。通过 PCR 扩增,体系中突变的 cfDNA 数量进一步增加,从而可以通过第一代测序轻松检测突变状态。结果 在合成野生型和 T790M 表皮生长因子受体 DNA 片段的混合物中,我们的新检测方法仍能在 fg 水平检测到 T790M 突变,灵敏度非常高。我们还测试了它在检测 NSCLC 患者临床样本中低变异等位基因频率(VAF)突变方面的性能。低 VAF(0.1% 和 0.5%)的血浆 cfDNA 样本很容易通过 DNA 增强扩增检测到。结论 该系统对突变的 cfDNA 进行了增强扩增,可快速、灵敏、经济地检测肿瘤中的耐药突变,是用于 NSCLC 早期筛查和个体化靶向治疗的有效工具。
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引用次数: 0
Detection of serum CC16 by a rapid and ultrasensitive magnetic chemiluminescence immunoassay for lung disease diagnosis. 用快速、超灵敏的磁化学发光免疫测定法检测血清 CC16,用于肺病诊断。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-30 DOI: 10.1515/cclm-2024-0724
Kaili Duan, Yu Xiang, Yilong Deng, Junman Chen, Ping Liu

Objectives: It has been reported that serum Clara cell secreted protein 16 (CC16) is a potential biomarker for lung injury diseases, but currently, there is no other method that is faster, more accurate, or more sensitive being applied in clinical practice apart from ELISA. The current study was designed to established a magnetic nanoparticles chemiluminescence immunoassay (MNPs-CLIA) for highly sensitive automated detection of serum Clara cell secretory protein 16 (CC16), and validated its diagnostic performance for lung disease.

Methods: The study included the expression of CC16 recombinant protein, the preparation and screening of its monoclonal antibody (MAb), as well as the construction, optimization and analytical evaluation of the MNPs-CLIA method. The clinical application value of this method was investigated by detecting CC16 level in 296 serum samples.

Results: The linear range of the MNPs-CLIA assay system was 0.2-50 ng/mL, and the limit of detection was 0.037 ng/mL. Performance parameters such as specificity, recovery rate, and precision can meet the industry standards of in vitro diagnostic reagents. The established method reveals consistent results with ELISA (R2=0.9962) currently used clinically, and it also exhibits satisfactory diagnostic efficacy of silicosis, chronic obstructive pulmonary disease (COPD), and pulmonary sarcoidosis, with areas under the curve (AUC) of 0.9748, 0.8428 and 0.9128, respectively.

Conclusions: Our established MNPs-CLIA method has the advantages of automation, high throughput, rapidity, and simplicity, and can be promoted for widely popularized in clinical applications. MNPs-CLIA detection of serum CC16 has efficient diagnostic potentiality for predicting and diagnosing lung diseases.

研究目的据报道,血清克拉拉细胞分泌蛋白 16(CC16)是肺损伤疾病的潜在生物标志物,但目前除 ELISA 外,还没有其他更快、更准确、更灵敏的方法应用于临床。本研究旨在建立一种高灵敏度自动检测血清克拉拉细胞分泌蛋白 16(CC16)的磁性纳米颗粒化学发光免疫分析法(MNPs-CLIA),并验证其对肺部疾病的诊断性能:研究包括CC16重组蛋白的表达、其单克隆抗体(MAb)的制备和筛选,以及MNPs-CLIA方法的构建、优化和分析评估。通过检测 296 份血清样本中的 CC16 水平,研究了该方法的临床应用价值:结果:MNPs-CLIA检测系统的线性范围为0.2-50 ng/mL,检出限为0.037 ng/mL。特异性、回收率和精密度等性能参数均符合体外诊断试剂的行业标准。所建立的方法与目前临床使用的酶联免疫吸附法(R2=0.9962)结果一致,对矽肺、慢性阻塞性肺病(COPD)和肺肉样肿的诊断效果也令人满意,曲线下面积(AUC)分别为 0.9748、0.8428 和 0.9128:我们建立的MNPs-CLIA方法具有自动化、高通量、快速、简便等优点,可在临床上广泛推广应用。MNPs-CLIA检测血清CC16在预测和诊断肺部疾病方面具有高效的诊断潜力。
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引用次数: 0
Accurate non-ceruloplasmin bound copper: a new biomarker for the assessment and monitoring of Wilson disease patients using HPLC coupled to ICP-MS/MS. 利用 HPLC 与 ICP-MS/MS 联用技术,准确测定与非鱼肝蛋白结合的铜:一种用于评估和监测威尔逊病患者的新生物标记物。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-30 DOI: 10.1515/cclm-2024-0213
Chris F Harrington, Geoff Carpenter, James P C Coverdale, Leisa Douglas, Craig Mills, Karl Willis, Michael L Schilsky

Objectives: Assessment of Wilson disease is complicated, with neither ceruloplasmin, nor serum or urine copper, being reliable. Two new indices, accurate non-ceruloplasmin copper (ANCC) and relative ANCC were developed and applied to a cohort of 71 patients, as part of a Wilson Disease Registry Study.

Methods: Elemental copper-protein speciation was developed for holo-ceruloplasmin quantitation using strong anion exchange chromatography coupled to triple quadrupole inductively coupled plasma mass spectrometry. The serum proteins were separated using gradient elution and measured at m/z 63 (63Cu+) and 48 (32S16O+) using oxygen reaction mode and Cu-EDTA as calibration standard. The ANCC was calculated by subtraction of the ceruloplasmin bound copper from the total serum copper and the RelANCC was the percentage of total copper present as the ANCC.

Results: The accuracy of the holo-ceruloplasmin measurement was established using two certified reference materials, giving a mean recovery of 94.2 %. Regression analysis between the sum of the copper containing species and total copper concentration in the patient samples was acceptable (slope=0.964, intercept=0, r=0.987) and a difference plot, gave a mean difference for copper of 0.38 μmol/L. Intra-day precision for holo-ceruloplasmin at serum copper concentrations of 0.48 and 3.20 μmol/L were 5.2 and 5.6 % CV and the intermediate precision at concentrations of 0.80 and 5.99 μmol/L were 6.4 and 6.4 % CV, respectively. The limit of detection (LOD) and lower limit of quantification (LLOQ) for holo-ceruloplasmin were 0.08 and 0.27 μmol/L as copper, respectively.

Conclusions: ANCC and Relative ANCC are important new diagnostic and monitoring biomarker indices for Wilson disease (WD).

目的:威尔森氏病的评估很复杂,因为脑磷脂蛋白、血清或尿液中的铜都不可靠。作为威尔森氏病登记研究的一部分,我们开发了两种新的指标,即准确非脑磷脂铜(ANCC)和相对 ANCC,并将其应用于 71 例患者:采用强阴离子交换色谱法和三重四极杆电感耦合等离子体质谱法,开发了用于全铜血清蛋白定量的铜元素-蛋白质规格。使用梯度洗脱法分离血清蛋白,并使用氧反应模式和 Cu-EDTA 作为校准标准测量 m/z 63 (63Cu+) 和 48 (32S16O+)。ANCC是通过从血清总铜中减去与脑磷脂结合的铜而计算得出的,RelANCC则是ANCC占总铜的百分比:使用两种经认证的参考物质确定了全铜血清素测量的准确性,平均回收率为 94.2%。患者样本中含铜种类总和与总铜浓度之间的回归分析结果是可以接受的(斜率=0.964,截距=0,r=0.987),差值图显示铜的平均差值为 0.38 μmol/L。在血清铜浓度为 0.48 和 3.20 μmol/L 时,全铜血清素的日内精密度分别为 5.2% 和 5.6% CV,在浓度为 0.80 和 5.99 μmol/L 时,中间精密度分别为 6.4% 和 6.4% CV。以铜为单位,全铜绿蛋白的检测限(LOD)和定量下限(LLOQ)分别为 0.08 μmol/L 和 0.27 μmol/L:ANCC和相对ANCC是诊断和监测威尔逊病(WD)的新的重要生物标志物指标。
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引用次数: 0
Preservation of urine specimens for metabolic evaluation of recurrent urinary stone formers. 保存尿液标本,用于对复发性尿路结石患者进行代谢评估。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-30 DOI: 10.1515/cclm-2024-0773
Tomáš Šálek, Pavel Musil, Pieter Vermeersch, Rachel Marrington, Zeliha G Dikmen, Radka Poláchová, Ulrike Kipman, Timo T Kouri, Janne Cadamuro

Objectives: Stability of concentrations of urinary stone-related metabolites was analyzed from samples of recurrent urinary stone formers to assess necessity and effectiveness of urine acidification during collection and storage.

Methods: First-morning urine was collected from 20 adult calcium-stone forming patients at Tomas Bata Hospital in the Czech Republic. Urine samples were analyzed for calcium, magnesium, inorganic phosphate, uric acid, sodium, potassium, chloride, citrate, oxalate, and urine particles. The single-voided specimens were collected without acidification, after which they were divided into three groups for storage: samples without acidification ("NON"), acidification before storage ("PRE"), or acidification after storage ("POST"). The analyses were conducted on the day of arrival (day 0, "baseline"), or after storage for 2 or 7 days at room temperature. The maximum permissible difference (MPD) was defined as ±20 % from the baseline.

Results: The urine concentrations of all stone-related metabolites remained within the 20 % MPD limits in NON and POST samples after 2 days, except for calcium in NON sample of one patient, and oxalate of three patients and citrate of one patient in POST samples. In PRE samples, stability failed in urine samples for oxalate of three patients, and for uric acid of four patients after 2 days. Failures in stability often correlated with high baseline concentrations of those metabolites in urine.

Conclusions: Detailed procedures are needed to collect urine specimens for analysis of urinary stone-related metabolites, considering both patient safety and stability of those metabolites. We recommend specific preservation steps.

目的:分析复发性尿结石患者尿液中结石相关代谢物浓度的稳定性:分析复发性尿结石患者尿液中结石相关代谢物浓度的稳定性,以评估尿液酸化在收集和储存过程中的必要性和有效性:方法:从捷克共和国托马斯-巴塔医院(Tomas Bata Hospital)的20名成年钙结石患者中收集晨尿。对尿液样本进行了钙、镁、无机磷酸盐、尿酸、钠、钾、氯化物、柠檬酸盐、草酸盐和尿液颗粒分析。采集的单排标本未经酸化处理,然后分为三组储存:未经酸化处理("NON")、储存前酸化处理("PRE")或储存后酸化处理("POST")。分析在到达当天(第 0 天,"基线")或在室温下储存 2 天或 7 天后进行。最大允许差值(MPD)定义为与基线值的±20%:结果:2 天后,除了一名患者的非基线样本中的钙以及三名患者的草酸盐和一名患者的枸橼酸盐外,所有与结石有关的代谢物在非基线样本和前置样本中的尿液浓度均保持在 20% 的最大允许差值范围内。在预处理样本中,3 名患者尿样中的草酸盐和 4 名患者尿样中的尿酸在 2 天后稳定性失效。稳定性失效往往与尿液中这些代谢物的基线浓度较高有关:结论:收集尿液标本以分析尿结石相关代谢物需要详细的程序,既要考虑患者的安全,也要考虑这些代谢物的稳定性。我们建议采取具体的保存步骤。
{"title":"Preservation of urine specimens for metabolic evaluation of recurrent urinary stone formers.","authors":"Tomáš Šálek, Pavel Musil, Pieter Vermeersch, Rachel Marrington, Zeliha G Dikmen, Radka Poláchová, Ulrike Kipman, Timo T Kouri, Janne Cadamuro","doi":"10.1515/cclm-2024-0773","DOIUrl":"https://doi.org/10.1515/cclm-2024-0773","url":null,"abstract":"<p><strong>Objectives: </strong>Stability of concentrations of urinary stone-related metabolites was analyzed from samples of recurrent urinary stone formers to assess necessity and effectiveness of urine acidification during collection and storage.</p><p><strong>Methods: </strong>First-morning urine was collected from 20 adult calcium-stone forming patients at Tomas Bata Hospital in the Czech Republic. Urine samples were analyzed for calcium, magnesium, inorganic phosphate, uric acid, sodium, potassium, chloride, citrate, oxalate, and urine particles. The single-voided specimens were collected without acidification, after which they were divided into three groups for storage: samples without acidification (\"NON\"), acidification before storage (\"PRE\"), or acidification after storage (\"POST\"). The analyses were conducted on the day of arrival (day 0, \"baseline\"), or after storage for 2 or 7 days at room temperature. The maximum permissible difference (<i>MPD</i>) was defined as ±20 % from the baseline.</p><p><strong>Results: </strong>The urine concentrations of all stone-related metabolites remained within the 20 % <i>MPD</i> limits in NON and POST samples after 2 days, except for calcium in NON sample of one patient, and oxalate of three patients and citrate of one patient in POST samples. In PRE samples, stability failed in urine samples for oxalate of three patients, and for uric acid of four patients after 2 days. Failures in stability often correlated with high baseline concentrations of those metabolites in urine.</p><p><strong>Conclusions: </strong>Detailed procedures are needed to collect urine specimens for analysis of urinary stone-related metabolites, considering both patient safety and stability of those metabolites. We recommend specific preservation steps.</p>","PeriodicalId":10390,"journal":{"name":"Clinical chemistry and laboratory medicine","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141787402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancing value-based laboratory medicine. 推进以价值为基础的实验室医学。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-29 DOI: 10.1515/cclm-2024-0823
Mario Plebani

Following the COVID-19 pandemic, the concepts of value-based medicine (VBM) and value-based laboratory medicine (VBLM) are receiving increasing interest to improve the quality, sustainability and safety of healthcare. Laboratory medicine is well positioned to support the transition to value-based healthcare as it helps to improve clinical outcomes and healthcare sustainability by reducing the time to diagnosis, improving diagnostic accuracy, providing effective guidance for tailored therapies and monitoring, and supporting screening and wellness care. However, the perception of the value of laboratory medicine is still limited, to the extent that it has been defined a "profession without a face", often lacking visibility to patients and the public. In addition, in recent decades, clinical laboratories have sought to improve the ration between outcomes and costs by increasing efficiency and reducing the cost per test rather than improving clinical outcomes. The aim of this paper is to propose a 10-point manifesto for implementing value-based laboratory medicine in clinical practice.

继 COVID-19 大流行之后,以价值为基础的医疗(VBM)和以价值为基础的检验医学(VBLM)的概念正受到越来越多的关注,以提高医疗保健的质量、可持续性和安全性。实验室医学通过缩短诊断时间、提高诊断准确性、为有针对性的治疗和监测提供有效指导以及支持筛查和健康护理,有助于改善临床结果和医疗保健的可持续性,因此完全有能力支持向以价值为基础的医疗保健过渡。然而,人们对检验医学价值的认识仍然有限,以至于将其定义为 "没有脸面的专业",对患者和公众而言往往缺乏能见度。此外,近几十年来,临床实验室一直试图通过提高效率和降低每次检验的成本来改善结果与成本之间的比例,而不是改善临床结果。本文旨在提出在临床实践中实施以价值为基础的检验医学的十点宣言。
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引用次数: 0
Evaluation of biochemical algorithms to screen dysbetalipoproteinemia in ε2ε2 and rare APOE variants carriers 评估筛查ε2ε2 和罕见 APOE 变体携带者脂蛋白血症的生化算法
IF 6.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-27 DOI: 10.1515/cclm-2024-0587
Louise Michenaud, Nathanaël Marrié, Antoine Rimbert, Oriane Marmontel, Sybil Charrière, Charles Gibert, Caroline Bouveyron, Jade Mammi, Bertrand Cariou, Philippe Moulin, Mathilde Di Filippo
Objectives Dysbetalipoproteinemia (DBL) is a combined dyslipidemia associated with an increased risk of atherosclerotic cardiovascular diseases mostly occurring in ε2ε2 subjects and infrequently in subjects with rare APOE variants. Several algorithms have been proposed to screen DBL. In this work, we compared the diagnostic performances of nine algorithms including a new one. Methods Patients were divided into 3 groups according to their APOE genotype: ε2ε2 (“ε2ε2”, n=49), carriers of rare variants (“APOEmut”, n=20) and non-carriers of ε2ε2 nor APOE rare variant (“controls”, n=115). The algorithms compared were those from Fredrickson, Sniderman, Boot, Paquette, De Graaf, Sampson, eSampson, Bea and ours, the “Hospices Civils de Lyon (HCL) algorithm”. Our gold standard was the presence of a ε2ε2 genotype or of a rare variant associated with triglycerides (TG) >1.7 mmol/L. A replication in the UK Biobank and a robustness analysis were performed by considering only subjects with both TG and low-density lipoprotein-cholesterol (LDLc) >90th percentile. Results Total cholesterol (TC)/ApoB and NHDLC/ApoB are the best ratios to suspect DBL. In ε2ε2, according to their likelihood ratios (LR), the most clinically efficient algorithms were the HCL, Sniderman and De Graaf’s. In APOEmut, Sniderman’s algorithm exhibited the lowest negative LR (0.07) whereas the HCL’s exhibited the highest positive LR (29). In both cohorts, the HCL algorithm had the best LR. Conclusions We proposed a powerful algorithm based on ApoB concentration and the routine lipid profile, which performs remarkably well in detecting ε2ε2 or APOE variant-related DBL. Additional studies are needed to further evaluate algorithms performances in DBL carriers of infrequent APOE variants.
目的 白细胞脂蛋白异常血症(DBL)是一种与动脉粥样硬化性心血管疾病风险增加有关的合并血脂异常,主要发生在ε2ε2受试者中,在具有罕见APOE变异的受试者中并不常见。目前已提出了几种筛选 DBL 的算法。在这项工作中,我们比较了包括一种新算法在内的九种算法的诊断性能。方法 根据 APOE 基因型将患者分为三组:ε2ε2("ε2ε2",n=49)、罕见变体携带者("APOEmut",n=20)和非ε2ε2 或 APOE 罕见变体携带者("对照组",n=115)。比较的算法包括 Fredrickson、Sniderman、Boot、Paquette、De Graaf、Sampson、eSampson、Bea 和我们的 "Hospices Civils de Lyon (HCL) 算法"。我们的金标准是存在ε2ε2基因型或与甘油三酯(TG)>1.7 mmol/L相关的罕见变体。仅考虑甘油三酯和低密度脂蛋白胆固醇(LDLc)均为第 90 百分位数的受试者,在英国生物库中进行了复制,并进行了稳健性分析。结果 总胆固醇 (TC)/ApoB 和 NHDLC/ApoB 是怀疑 DBL 的最佳比率。在ε2ε2中,根据似然比(LR),临床上最有效的算法是HCL、Sniderman和De Graaf算法。在 APOEmut 中,Sniderman 算法的阴性似然比最低(0.07),而 HCL 算法的阳性似然比最高(29)。在两个队列中,HCL 算法的 LR 都是最好的。结论 我们提出了一种基于载脂蛋白 B 浓度和常规血脂谱的强大算法,该算法在检测ε2ε2 或 APOE 变异相关 DBL 方面表现出色。还需要进行更多的研究来进一步评估算法在不常见的 APOE 变异 DBL 携带者中的表现。
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引用次数: 0
Establishment of ELISA-comparable moderate and high thresholds for anticardiolipin and anti-β2 glycoprotein I chemiluminescent immunoassays according to the 2023 ACR/EULAR APS classification criteria and evaluation of their diagnostic performance. 根据 2023 年 ACR/EULAR APS 分类标准,为抗心肌脂蛋白和抗β2 糖蛋白 I 化学发光免疫测定建立 ELISA 可比的中度和高度阈值,并评估其诊断性能。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-24 DOI: 10.1515/cclm-2024-0570
Polona Žigon, Nika Boštic, Aleš Ambrožič, Žiga Rotar, Elizabeta Blokar, Manca Ogrič, Saša Čučnik

Objectives: Recently published 2023 ACR/EULAR APS classification criteria emphasize the importance of quantifying single-, double-, and triple-antiphospholipid antibody positivity, distinguishing between IgG and IgM isotypes, and delineating moderate/high levels of anticardiolipin (aCL) and anti-β2 glycoprotein I (anti-β2GPI) antibodies. We aimed to establish clinically important moderate/high thresholds for aCL and anti-β2GPI IgG/IgM chemiluminescent immunoassays (CLIA), in particular QUANTA Flash, comparable to our in-house ELISAs used for over two decades, and to evaluate their diagnostic performance.

Methods: QUANTA Flash CLIA and in-house ELISAs were used to measure aCL and anti-β2GPI IgG/IgM. Moderate thresholds for QUANTA Flash CLIA were determined using a non-parametric approach, calculating a 99th percentile on serum samples from 139 blood donors, and by mirroring the diagnostic performance of in-house ELISA on 159 patient samples.

Results: Thresholds for QUANTA Flash CLIA achieving diagnostic performance equivalent to in-house ELISAs were 40 CU for moderate and 80 CU for high levels for aCL and anti-β2GPI IgG and IgM. The assays showed good qualitative agreement, ranging from 76.10 to 91.19 %. When considering in-house ELISA results, 14 out of 80 (17.5 %) patients did not fulfill the new ACR/EULAR laboratory classification criteria, while 27 out of 80 (33.8 %) did not when considering QUANTA Flash CLIA results.

Conclusions: We determined moderate and high thresholds for aCL and anti-β2GPI IgG and IgM detected with QUANTA Flash CLIA, aligning with long-established in-house ELISA thresholds. These thresholds are crucial for seamlessly integrating of the new 2023 ACR/EULAR classification criteria into future observational clinical studies and trials.

目的:最近公布的 2023 年 ACR/EULAR APS 分类标准强调了量化单抗、双抗和三抗磷脂抗体阳性的重要性,区分了 IgG 和 IgM 的异型,并划分了抗心磷脂 (aCL) 和抗β2 糖蛋白 I (anti-β2GPI) 抗体的中/高水平。我们的目标是为 aCL 和抗β2GPI IgG/IgM 化学发光免疫测定(CLIA),特别是 QUANTA Flash,建立临床上重要的中/高阈值,与我们使用了二十多年的内部 ELISAs 相媲美,并评估它们的诊断性能:方法:使用 QUANTA Flash CLIA 和内部 ELISAs 检测 aCL 和抗β2GPI IgG/IgM。采用非参数方法确定了 QUANTA Flash CLIA 的适度阈值,计算了 139 名献血者血清样本的第 99 百分位数,并在 159 份患者样本上反映了内部 ELISA 的诊断性能:QUANTA Flash CLIA 检测 aCL 和抗β2GPI IgG 和 IgM 的阈值为 40 CU(中度水平)和 80 CU(高度水平),诊断性能与内部 ELISA 相当。这些测定显示出良好的定性一致性,从 76.10% 到 91.19%。在考虑内部 ELISA 检测结果时,80 位患者中有 14 位(17.5%)不符合 ACR/EULAR 新的实验室分类标准,而在考虑 QUANTA Flash CLIA 检测结果时,80 位患者中有 27 位(33.8%)不符合 ACR/EULAR 新的实验室分类标准:我们确定了 QUANTA Flash CLIA 检测到的 aCL 和抗β2GPI IgG 和 IgM 的中度和高度阈值,这与长期以来建立的内部 ELISA 阈值一致。这些阈值对于将 2023 年 ACR/EULAR 新分类标准无缝整合到未来的观察性临床研究和试验中至关重要。
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引用次数: 0
Implications of monoclonal gammopathy and isoelectric focusing pattern 5 on the free light chain kappa diagnostics in cerebrospinal fluid. 单克隆丙种球蛋白病和等电聚焦模式 5 对脑脊液中游离轻链 kappa 诊断的影响。
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-23 DOI: 10.1515/cclm-2023-1468
Malte J Hannich, Franz F Konen, Konrad Gag, Aiham Alkhayer, Seda N Türker, Kathrin Budde, Matthias Nauck, Ulrich Wurster, Alexander Dressel, Thomas Skripuletz, Marie Süße

Objectives: Oligoclonal bands (OCB) analysis is the reference standard for detecting an intrathecal IgG synthesis. Alongside OCB, free light chains kappa (FLCκ) are considered an additional sensitive biomarker for determining patterns 2 or 3, indicating intrathecal Ig synthesis. However, kFLC IF is not suitable for detecting a monoclonal pattern 5. The primary aim of this study was to evaluate the impact of incorporating FLCκ analysis into routine cerebrospinal fluid (CSF) diagnostics instead of OCB testing on the rate of missed monoclonal IgG detection.

Methods: A two-center retrospective biomarker study was conducted. OCB were identified using isoelectric focusing in polyacrylamide gels followed by silver staining or in agarose gels followed by immunofixation. FLCκ were quantified using nephelometry and FLCκ assay (Siemens).

Results: Out of a combined total of 17,755 OCB analyses conducted between 2011 and 2021, a subset of 269 cases (1.5 %) exhibited pattern 5. 98 samples (36 %), which included 18 samples with intrathecal inflammation as determined by additional OCB pattern 2 were included in the FLCκ analysis. Of those, 16 (89 %) had intrathecal FLCκ synthesis.

Conclusions: While FLCκ offers a promising avenue for detecting an intrathecal inflammation, the pattern 5, though rare, remains a valuable additional finding of OCB analysis. A combined approach of FLCκ and OCB analysis is recommended for a comprehensive assessment of the humoral intrathecal immune response.

目的:少克隆带(OCB)分析是检测鞘内 IgG 合成的参考标准。除 OCB 外,游离轻链 kappa(FLCκ)也被认为是确定模式 2 或 3 的另一个敏感生物标志物,表明鞘内 Ig 合成。然而,kFLC IF 并不适合检测单克隆模式 5。本研究的主要目的是评估将FLCκ分析纳入常规脑脊液(CSF)诊断而非OCB检测对单克隆IgG漏检率的影响:方法:进行了一项双中心回顾性生物标记物研究。在聚丙烯酰胺凝胶中进行等电聚焦,然后进行银染色;或在琼脂糖凝胶中进行等电聚焦,然后进行免疫固定。FLCκ的定量采用的是尼泊金测定法和FLCκ测定法(西门子):结果:在 2011 年至 2021 年期间进行的总共 17,755 例 OCB 分析中,有 269 例(1.5%)表现出模式 5。98份样本(36%)被纳入FLCκ分析,其中包括18份由附加OCB模式2确定的鞘内炎症样本。其中,16 个样本(89%)有鞘内 FLCκ 合成:结论:虽然 FLCκ 为检测鞘内炎症提供了一个很有前景的途径,但模式 5 虽然罕见,仍然是 OCB 分析的一个有价值的额外发现。建议采用 FLCκ 和 OCB 分析相结合的方法来全面评估鞘内体液免疫反应。
{"title":"Implications of monoclonal gammopathy and isoelectric focusing pattern 5 on the free light chain kappa diagnostics in cerebrospinal fluid.","authors":"Malte J Hannich, Franz F Konen, Konrad Gag, Aiham Alkhayer, Seda N Türker, Kathrin Budde, Matthias Nauck, Ulrich Wurster, Alexander Dressel, Thomas Skripuletz, Marie Süße","doi":"10.1515/cclm-2023-1468","DOIUrl":"https://doi.org/10.1515/cclm-2023-1468","url":null,"abstract":"<p><strong>Objectives: </strong>Oligoclonal bands (OCB) analysis is the reference standard for detecting an intrathecal IgG synthesis. Alongside OCB, free light chains kappa (FLCκ) are considered an additional sensitive biomarker for determining patterns 2 or 3, indicating intrathecal Ig synthesis. However, kFLC IF is not suitable for detecting a monoclonal pattern 5. The primary aim of this study was to evaluate the impact of incorporating FLCκ analysis into routine cerebrospinal fluid (CSF) diagnostics instead of OCB testing on the rate of missed monoclonal IgG detection.</p><p><strong>Methods: </strong>A two-center retrospective biomarker study was conducted. OCB were identified using isoelectric focusing in polyacrylamide gels followed by silver staining or in agarose gels followed by immunofixation. FLCκ were quantified using nephelometry and FLCκ assay (Siemens).</p><p><strong>Results: </strong>Out of a combined total of 17,755 OCB analyses conducted between 2011 and 2021, a subset of 269 cases (1.5 %) exhibited pattern 5. 98 samples (36 %), which included 18 samples with intrathecal inflammation as determined by additional OCB pattern 2 were included in the FLCκ analysis. Of those, 16 (89 %) had intrathecal FLCκ synthesis.</p><p><strong>Conclusions: </strong>While FLCκ offers a promising avenue for detecting an intrathecal inflammation, the pattern 5, though rare, remains a valuable additional finding of OCB analysis. A combined approach of FLCκ and OCB analysis is recommended for a comprehensive assessment of the humoral intrathecal immune response.</p>","PeriodicalId":10390,"journal":{"name":"Clinical chemistry and laboratory medicine","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-07-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141747578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical utility of regions of homozygosity (ROH) identified in exome sequencing: when to pursue confirmatory uniparental disomy testing for imprinting disorders? 外显子测序中发现的同源性区域 (ROH) 的临床实用性:何时进行印记疾病的单亲断裂确证检测?
IF 3.8 2区 医学 Q1 MEDICAL LABORATORY TECHNOLOGY Pub Date : 2024-07-19 DOI: 10.1515/cclm-2024-0239
Xiaoyan Huo, Xinyi Lu, Deyun Lu, Huili Liu, Yi Liu, Qianfeng Zhao, Yu Sun, Weiqian Dai, Wenjuan Qiu, Yongguo Yu, Yanjie Fan

Objectives: Regions of homozygosity (ROH) could implicate uniparental disomy (UPD) on specific chromosomes associated with imprinting disorders. Though the algorithms for ROH detection in exome sequencing (ES) have been developed, optimal reporting thresholds and when to pursue confirmatory UPD testing for imprinting disorders remain in ambiguity. This study used a data-driven approach to assess optimal reporting thresholds of ROH in clinical practice.

Methods: ROH analysis was performed using Automap in a retrospective cohort of 8,219 patients and a prospective cohort of 1,964 patients with ES data. Cases with ROH on imprinting-disorders related chromosomes were selected for additional methylation-specific confirmatory testing. The diagnostic yield, the ROH pattern of eventually diagnosed cases and optimal thresholds for confirmatory testing were analyzed.

Results: In the retrospective analysis, 15 true UPD cases of imprinting disorders were confirmed among 51 suspected cases by ROH detection. Pattern of ROH differed between confirmed UPD and non-UPD cases. Maximized yield and minimized false discovery rate of confirmatory UPD testing was achieved at the thresholds of >20 Mb or >25 % chromosomal coverage for interstitial ROH, and >5 Mb for terminal ROH. Current recommendation by ACMG was nearly optimal, though refined thresholds as proposed in this study could reduce the workload by 31 % without losing any true UPD diagnosis. Our refined thresholds remained optimal after independent evaluation in a prospective cohort.

Conclusions: ROH identified in ES could implicate the presence of clinically relevant UPD. This study recommended size and coverage thresholds for confirmatory UPD testing after ROH detection in ES, contributing to the development of evidence-based reporting guidelines.

目的:同源性区域(ROH)可能涉及与印记疾病相关的特定染色体上的单亲裂殖(UPD)。虽然外显子组测序(ES)中的ROH检测算法已经开发出来,但最佳报告阈值以及何时进行印记疾病的确证性UPD检测仍不明确。本研究采用数据驱动法评估临床实践中ROH的最佳报告阈值:方法:使用 Automap 对 8,219 例回顾性队列患者和 1,964 例具有 ES 数据的前瞻性队列患者进行了 ROH 分析。筛选出印记紊乱相关染色体上有 ROH 的病例,进行额外的甲基化特异性确证检测。分析了诊断率、最终确诊病例的 ROH 模式和确证检测的最佳阈值:结果:在回顾性分析中,51 例疑似病例中通过 ROH 检测确诊了 15 例真正的印记障碍 UPD 病例。在确诊的 UPD 病例和非 UPD 病例中,ROH 的模式有所不同。间期ROH的阈值>20 Mb或染色体覆盖率>25%,末期ROH的阈值>5 Mb时,UPD确诊检测的产量最大,误诊率最低。ACMG 目前的建议几乎是最佳的,但本研究提出的改进阈值可将工作量减少 31%,而不会丢失任何真正的 UPD 诊断。在前瞻性队列中进行独立评估后,我们改进后的阈值仍然是最佳的:结论:在 ES 中识别出的 ROH 可提示存在临床相关的 UPD。本研究推荐了在 ES 中检测到 ROH 后进行确诊 UPD 检测的规模和覆盖阈值,有助于制定循证报告指南。
{"title":"Clinical utility of regions of homozygosity (ROH) identified in exome sequencing: when to pursue confirmatory uniparental disomy testing for imprinting disorders?","authors":"Xiaoyan Huo, Xinyi Lu, Deyun Lu, Huili Liu, Yi Liu, Qianfeng Zhao, Yu Sun, Weiqian Dai, Wenjuan Qiu, Yongguo Yu, Yanjie Fan","doi":"10.1515/cclm-2024-0239","DOIUrl":"https://doi.org/10.1515/cclm-2024-0239","url":null,"abstract":"<p><strong>Objectives: </strong>Regions of homozygosity (ROH) could implicate uniparental disomy (UPD) on specific chromosomes associated with imprinting disorders. Though the algorithms for ROH detection in exome sequencing (ES) have been developed, optimal reporting thresholds and when to pursue confirmatory UPD testing for imprinting disorders remain in ambiguity. This study used a data-driven approach to assess optimal reporting thresholds of ROH in clinical practice.</p><p><strong>Methods: </strong>ROH analysis was performed using Automap in a retrospective cohort of 8,219 patients and a prospective cohort of 1,964 patients with ES data. Cases with ROH on imprinting-disorders related chromosomes were selected for additional methylation-specific confirmatory testing. The diagnostic yield, the ROH pattern of eventually diagnosed cases and optimal thresholds for confirmatory testing were analyzed.</p><p><strong>Results: </strong>In the retrospective analysis, 15 true UPD cases of imprinting disorders were confirmed among 51 suspected cases by ROH detection. Pattern of ROH differed between confirmed UPD and non-UPD cases. Maximized yield and minimized false discovery rate of confirmatory UPD testing was achieved at the thresholds of >20 Mb or >25 % chromosomal coverage for interstitial ROH, and >5 Mb for terminal ROH. Current recommendation by ACMG was nearly optimal, though refined thresholds as proposed in this study could reduce the workload by 31 % without losing any true UPD diagnosis. Our refined thresholds remained optimal after independent evaluation in a prospective cohort.</p><p><strong>Conclusions: </strong>ROH identified in ES could implicate the presence of clinically relevant UPD. This study recommended size and coverage thresholds for confirmatory UPD testing after ROH detection in ES, contributing to the development of evidence-based reporting guidelines.</p>","PeriodicalId":10390,"journal":{"name":"Clinical chemistry and laboratory medicine","volume":null,"pages":null},"PeriodicalIF":3.8,"publicationDate":"2024-07-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141632853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Clinical chemistry and laboratory medicine
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