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Uncovering the arsenal of class II bacteriocins in salivarius streptococci 揭示唾液链球菌中第二类细菌素的武库。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07217-y
Julien Damoczi, Adrien Knoops, Marie-Sophie Martou, Félix Jaumaux, Philippe Gabant, Jacques Mahillon, Jan-Willem Veening, Johann Mignolet, Pascal Hols
Facing the antibiotic resistance crisis, bacteriocins are considered as a promising alternative to treat bacterial infections. In the human commensal Streptococcus salivarius, the production of unmodified bacteriocins (or salivaricins) is directly controlled at the transcriptional level by quorum-sensing. To discover hidden bacteriocins, we harnessed here the unique molecular signatures of salivaricins not yet used in available computational pipelines and performed genome mining followed by orthogonal reconstitution and expression. From 100 genomes of S. salivarius, we identified more than 50 bacteriocin candidates clustered into 21 groups. Strain-based analysis of bacteriocin combinations revealed significant diversity, reflecting the plasticity of seven independent loci. Activity tests showed both narrow and broad-spectrum bacteriocins with overlapping activities against a wide panel of Gram-positive bacteria, including notorious multidrug-resistant pathogens. Overall, this work provides a search-to-test generic pipeline for bacteriocin discovery with high impact for bacterial ecology and broad applications in the food and biomedical fields. Class II bacteriocins in the Streptococcus salivarius pan-genome were bioinformatically identified based on conserved sequence properties. These diverse “salivaricins” show antibacterial activity against Gram-positive pathogens.
面对抗生素耐药性危机,细菌素被认为是治疗细菌感染的一种有前途的替代品。在人类共生菌唾液链球菌(Streptococcus salivarius)中,未修饰的细菌素(或唾液素)的产生在转录水平上直接受控于法定人数感应(quorum-sensing)。为了发现隐藏的细菌素,我们利用现有计算管道尚未使用的唾液毒素独特的分子特征,进行了基因组挖掘,然后进行了正交重组和表达。从 100 个唾液球菌基因组中,我们发现了 50 多种候选细菌素,共分为 21 组。基于菌株的细菌素组合分析揭示了显著的多样性,反映了七个独立基因座的可塑性。活性测试表明,窄谱和广谱细菌素对广泛的革兰氏阳性细菌(包括臭名昭著的耐多药病原体)具有重叠活性。总之,这项工作为细菌素的发现提供了一个从搜索到测试的通用管道,对细菌生态学具有重大影响,并可广泛应用于食品和生物医学领域。
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引用次数: 0
Accounting for heterogeneity due to environmental sources in meta-analysis of genome-wide association studies 在全基因组关联研究的荟萃分析中考虑环境因素导致的异质性。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07236-9
Siru Wang, Oyesola O. Ojewunmi, Abram Kamiza, Michele Ramsay, Andrew P. Morris, Tinashe Chikowore, Segun Fatumo, Jennifer L. Asimit
Meta-analysis of genome-wide association studies (GWAS) across diverse populations offers power gains to identify loci associated with complex traits and diseases. Often heterogeneity in effect sizes across populations will be correlated with genetic ancestry and environmental exposures (e.g. lifestyle factors). We present an environment-adjusted meta-regression model (env-MR-MEGA) to detect genetic associations by adjusting for and quantifying environmental and ancestral heterogeneity between populations. In simulations, env-MR-MEGA has similar or greater association power than MR-MEGA, with notable gains when the environmental factor has a greater correlation with the trait than ancestry. In our analysis of low-density lipoprotein cholesterol in ~19,000 individuals across twelve sex-stratified GWAS from Africa, adjusting for sex, BMI, and urban status, we identify additional heterogeneity beyond ancestral effects for seven variants. Env-MR-MEGA provides an approach to account for environmental effects using summary-level data, making it a useful tool for meta-analyses without the need to share individual-level data. Adjusting for and quantifying environmental heterogeneity in the meta-analysis of genomewide association studies of diverse populations identifies additional heterogeneity beyond ancestral effects.
对不同人群的全基因组关联研究(GWAS)进行元分析可提高识别与复杂性状和疾病相关的基因位点的能力。不同人群间效应大小的异质性往往与遗传血统和环境暴露(如生活方式因素)相关。我们提出了一种环境调整元回归模型(env-MR-MEGA),通过调整和量化人群间的环境和祖先异质性来检测遗传关联。在模拟实验中,env-MR-MEGA 的关联能力与 MR-MEGA 相似或更强,当环境因素与性状的相关性大于祖先相关性时,env-MR-MEGA 的关联能力会显著提高。我们对非洲 12 个性别分层 GWAS 中约 19,000 人的低密度脂蛋白胆固醇进行了分析,并对性别、体重指数和城市状况进行了调整。Env-MR-MEGA提供了一种利用汇总级数据解释环境效应的方法,使其成为一种有用的荟萃分析工具,而无需共享个体级数据。
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引用次数: 0
Advances in methods and concepts provide new insight into antibiotic fluxes across the bacterial membrane 方法和概念的进步为了解抗生素在细菌膜上的通量提供了新的视角。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07168-4
Julia Vergalli, Matthieu Réfrégiers, Paolo Ruggerone, Mathias Winterhalter, Jean-Marie Pagès
The sophisticated envelope of Gram-negative bacteria modulates the uptake of small molecules in a side-chain-sensitive manner. Despite intensive theoretical and experimental investigations, a general set of pathways underpinning antibiotic uptake has not been identified. This manuscript discusses the passive influx versus active efflux of antibiotics, considering the responsible membrane proteins and the transported molecules. Recent methods have analyzed drug transport across the bacterial membrane in order to understand their activity. The combination of in vitro, in cellulo and in silico methods shed light on the key, mainly electrostatic, interactions between the molecule surface, porins and transporters during permeation. A key factor is the relationship between the dose of an active compound near its target and its antibacterial activity during the critical early window. Today, methodology breakthroughs provide fruitful tools to precisely dissect drug transport, identify key steps in drug resistance associated with membrane impermeability and efflux, and highlight key parameters to generate more effective drugs. Gram-negative bacteria envelope controls drug accumulation via passive influx and active efflux mechanisms. This article discusses recent in cellulo, in vitro, and in silico methods highlighting key “drug-transporters” dialogues and proposes new perspectives to overcome drug resistance.
革兰氏阴性细菌复杂的包膜以侧链敏感的方式调节小分子的吸收。尽管进行了深入的理论和实验研究,但仍未找到支撑抗生素吸收的一般途径。本手稿讨论了抗生素的被动流入和主动流出,同时考虑了相关的膜蛋白和转运分子。最近的方法分析了药物在细菌膜上的转运,以了解其活性。体外、细胞内和硅学方法的结合揭示了渗透过程中分子表面、孔蛋白和转运体之间的关键(主要是静电)相互作用。一个关键因素是,在关键的早期窗口期,目标附近的活性化合物剂量与其抗菌活性之间的关系。如今,方法上的突破为精确剖析药物转运、确定与膜不透性和外流相关的耐药性关键步骤以及突出关键参数以产生更有效的药物提供了富有成效的工具。
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引用次数: 0
In vivo assembly of complete eukaryotic nucleosomes and (H3-H4)-only non-canonical nucleosomal particles in the model bacterium Escherichia coli 在模式菌大肠杆菌体内组装完整的真核生物核小体和仅含(H3-H4)的非规范核小体颗粒。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07211-4
Xiaojuan Zhou, Niubing Zhang, Jie Gong, Kaixiang Zhang, Ping Chen, Xiang Cheng, Bang-Ce Ye, Guoping Zhao, Xinyun Jing, Xuan Li
As a fundamental unit for packaging genomic DNA into chromatin, the eukaryotic nucleosome core comprises a canonical octamer with two copies for each histone, H2A, H2B, H3, and H4, wrapped around with 147 base pairs of DNA. While H3 and H4 share structure-fold with archaeal histone-like proteins, the eukaryotic nucleosome core and the complete nucleosome (the core plus H1 histone) are unique to eukaryotes. To explore whether the eukaryotic nucleosome can assemble in prokaryotes and to reconstruct the possible route for its emergence in eukaryogenesis, we developed an in vivo system for assembly of nucleosomes in the model bacterium, Escherichia coli, and successfully reconstituted the core nucleosome, the complete nucleosome, and unexpectedly the non-canonical (H3-H4)4 octasome. The core and complete nucleosomes assembled in E. coli exhibited footprints typical of eukaryotic hosts after in situ micrococcal nuclease digestion. Additionally, they caused condensation of E. coli nucleoid. We also demonstrated the stable formation of non-canonical (H3-H4)2 tetrasome and (H3-H4)4 octasomes in vivo, which are suggested to be ‘fossil complex’ that marks the intermediate in the progressive development of eukaryotic nucleosome. The study presents a unique platform in a bacterium for in vivo assembly and studying the properties of non-canonical variants of nucleosome. Development of an in vivo system for assembly of eukaryotic nucleosomes in Escherichia coli, including the non-canonical (H3-H4)4 octasome, suggests the H3-H4 tetrasome and octasomes are likely intermediate complexes in the evolution of the eukaryotic nucleosome.
作为将基因组 DNA 包装成染色质的基本单位,真核生物核小体核心由一个典型的八聚体组成,每个组蛋白(H2A、H2B、H3 和 H4)都有两个拷贝,外面包着 147 个碱基对的 DNA。虽然 H3 和 H4 与古生组蛋白类似蛋白具有相同的结构折叠,但真核生物核小体核心和完整的核小体(核心加 H1 组蛋白)却是真核生物所独有的。为了探索真核生物核小体能否在原核生物中组装,并重建其在真核发生过程中出现的可能途径,我们在模式细菌大肠杆菌中开发了一个体内核小体组装系统,并成功地重组了核心核小体、完整核小体以及非经典的(H3-H4)4八聚体。在大肠杆菌中组装的核心核小体和完整核小体在原位微球菌核酸酶消化后显示出真核宿主的典型足迹。此外,它们还引起了大肠杆菌核小体的凝集。我们还证明了非经典(H3-H4)2 四体和(H3-H4)4 八体在体内的稳定形成,它们被认为是 "化石复合体",标志着真核生物核小体逐步发展的中间过程。这项研究提供了一个独特的细菌平台,用于在体内组装和研究核小体非典型变体的特性。
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引用次数: 0
Longitudinal analyses of infants’ microbiome and metabolome reveal microbes and metabolites with seemingly coordinated dynamics 对婴儿微生物组和代谢组的纵向分析显示,微生物和代谢物似乎具有协调的动态变化。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07015-6
Hao Wu, Douglas V. Guzior, Christian Martin, Kerri A. Neugebauer, Madison M. Rzepka, Julie C. Lumeng, Robert A. Quinn, Gustavo de los Campos
Population studies have shown that the infant’s microbiome and metabolome undergo significant changes in early childhood. However, no previous study has investigated how diverse these changes are across subjects and whether the subject-specific dynamics of some microbes correlate with the over-time dynamics of specific metabolites. Using mixed-effects models, and data from the ABC study, we investigated the early childhood dynamics of fecal microbiome and metabolome and identified 83 amplicon sequence variants (ASVs) and 753 metabolites with seemingly coordinated trajectories. Enrichment analysis of these microbes and molecules revealed eight ASV families and 23 metabolite groups involving 1032 ASV-metabolite pairs with their presence-absence changing in a coordinated fashion. Members of the Lachnospiraceae (464/1032) and metabolites related to cholestane steroids (309/1032) dominated proportional shifts within the fecal microbiome and metabolome as infants aged. Longitudinal analyses of subject-specific dynamics in infants’ microbiome and metabolome identified microbes and metabolites with seemingly coordinated dynamics.
群体研究表明,婴儿的微生物组和代谢组在幼儿期会发生重大变化。然而,以前的研究还没有调查过这些变化在不同受试者身上的多样性,以及某些微生物的特定受试者动态是否与特定代谢物的长期动态相关。利用混合效应模型和 ABC 研究的数据,我们研究了儿童早期粪便微生物组和代谢组的动态变化,发现了 83 个扩增子序列变异(ASV)和 753 个代谢物,它们的轨迹似乎是协调的。对这些微生物和分子的富集分析显示,有8个ASV家族和23个代谢物组,涉及1032对ASV-代谢物,它们的存在-不存在以协调的方式发生变化。随着婴儿年龄的增长,粪便微生物组和代谢组中的Lachnospiraceae成员(464/1032)和与胆甾烷类固醇有关的代谢物(309/1032)的比例变化占主导地位。
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引用次数: 0
Multiscale 3D genome rewiring during PTF1A-mediated somatic cell reprogramming into neural stem cells 在 PTF1A 介导的体细胞重编程为神经干细胞过程中的多尺度三维基因组重配。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-14 DOI: 10.1038/s42003-024-07230-1
Rong Zhang, Jun Sun, Shuting Liu, Junjun Ding, Mengqing Xiang
The genome is intricately folded into chromatin compartments, topologically associating domains (TADs) and loops unique to each cell type. How this higher-order genome organization regulates cell fate transition remains elusive. Here we show how a single non-neural progenitor transcription factor, PTF1A, reorchestrates the 3D genome during fibroblast transdifferentiation into neural stem cells (NSCs). Multiomics analyses integrating Hi-C data, PTF1A and CTCF DNA-binding profiles, H3K27ac modification, and gene expression, demonstrate that PTF1A binds to subTAD boundaries subsequently associated with elevated CTCF binding and enhanced boundary insulation, and reorganizes chromatin loops, leading to gene expression changes that drive transdifferentiation into NSCs. Moreover, PTF1A activates enhancers and super-enhancers near low-insulation boundaries and modulates H3K27ac deposition, promoting cell fate transitions. Together, our data implicate an involvement of 3D genome in transcriptional and cell fate alterations, and highlight an essential role for PTF1A in gene expression control and multiscale 3D genome remodeling during cell reprogramming. This study explores the role of the transcription factor PTF1A in remodeling 3D genome architecture during the transdifferentiation of fibroblasts to neural stem cells, highlighting changes in gene expression and TAD organization.
基因组被错综复杂地折叠成染色质区、拓扑关联域(TAD)以及每种细胞类型特有的环路。这种高阶基因组组织如何调控细胞命运的转变仍是一个未知数。在这里,我们展示了单个非神经祖转录因子PTF1A如何在成纤维细胞向神经干细胞(NSCs)转分化过程中重新配置三维基因组。整合了Hi-C数据、PTF1A和CTCF DNA结合图谱、H3K27ac修饰和基因表达的多组学分析表明,PTF1A与subTAD边界结合,随后与CTCF结合增强和边界绝缘增强相关联,并重组染色质环路,导致基因表达变化,推动向NSCs的转分化。此外,PTF1A 还能激活低绝缘边界附近的增强子和超级增强子,并调节 H3K27ac 的沉积,促进细胞命运的转变。总之,我们的数据表明三维基因组参与了转录和细胞命运的改变,并强调了 PTF1A 在细胞重编程过程中基因表达控制和多尺度三维基因组重塑中的重要作用。
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引用次数: 0
Artemisinin-resistant Plasmodium falciparum Kelch13 mutant proteins display reduced heme-binding affinity and decreased artemisinin activation 耐青蒿素的恶性疟原虫 Kelch13 突变体蛋白显示出血红素结合亲和力降低和青蒿素激活能力下降。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-13 DOI: 10.1038/s42003-024-07178-2
Abdur Rahman, Sabahat Tamseel, Smritikana Dutta, Nawaal Khan, Mohammad Faaiz, Harshita Rastogi, Jyoti Rani Nath, Kasturi Haldar, Pramit Chowdhury,  Ashish, Souvik Bhattacharjee
The potency of frontline antimalarial drug artemisinin (ART) derivatives is triggered by heme-induced cleavage of the endoperoxide bond to form reactive heme-ART alkoxy radicals and covalent heme-ART adducts, which are highly toxic to the parasite. ART-resistant (ART-R) parasites with mutations in the Plasmodium falciparum Kelch-containing protein Kelch13 (PfKekch13) exhibit impaired hemoglobin uptake, reduced yield of hemoglobin-derived heme, and thus decreased ART activation. However, any direct involvement of PfKelch13 in heme-mediated ART activation has not been reported. Here, we show that the purified recombinant PfKelch13 wild-type (WT) protein displays measurable binding affinity for iron and heme, the main effectors for ART activation. The heme-binding property is also exhibited by the native PfKelch13 protein from parasite culture. The two ART-R recombinant PfKelch13 mutants (C580Y and R539T) display weaker heme binding affinities compared to the ART-sensitive WT and A578S mutant proteins, which further translates into reduced yield of heme-ART derivatives when ART is incubated with the heme molecules bound to the mutant PfKelch13 proteins. In conclusion, this study provides the first evidence for ART activation via the heme-binding propensity of PfKelch13. This mechanism may contribute to the modulation of ART-R levels in malaria parasites through a novel function of PfKelch13. Elucidation of heme binding affinity and artemisinin activation by the Plasmodium falciparum Kelch13 protein variants.
一线抗疟药物青蒿素(ART)衍生物的药效是由血红素诱导的内过氧键裂解形成活性血红素-ART 烷氧基自由基和共价血红素-ART 加合物引发的,后者对寄生虫有剧毒。恶性疟原虫含 Kelch 蛋白 Kelch13(PfKekch13)发生突变的抗逆转录病毒寄生虫(ART-R)表现出血红蛋白摄取受损、血红蛋白衍生血红素产量减少,从而降低了 ART 的活化。然而,PfKelch13 直接参与血红素介导的 ART 激活的情况尚未见报道。在这里,我们发现纯化的重组 PfKelch13 野生型(WT)蛋白与铁和血红素(ART 激活的主要效应物)具有可测量的结合亲和力。寄生虫培养物中的原生 PfKelch13 蛋白也具有血红素结合特性。与 ART 敏感的 WT 和 A578S 突变蛋白相比,两个 ART-R 重组 PfKelch13 突变体(C580Y 和 R539T)显示出较弱的血红素结合亲和力,当 ART 与结合到突变 PfKelch13 蛋白上的血红素分子孵育时,这进一步转化为血红素-ART 衍生物产量的减少。总之,本研究首次提供了通过 PfKelch13 的血红素结合倾向激活 ART 的证据。这一机制可能有助于通过 PfKelch13 的新功能调节疟原虫体内的 ART-R 水平。
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引用次数: 0
Aridification and major geotectonic landscape change shaped an extraordinary species radiation across a world’s extreme elevational gradient 干旱化和大地构造景观的重大变化形成了跨越世界极端海拔梯度的非同寻常的物种辐射。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-13 DOI: 10.1038/s42003-024-07181-7
Adrián Villastrigo, Steven J. B. Cooper, Barbara Langille, Erinn P. Fagan-Jeffries, William F. Humphreys, Lars Hendrich, Michael Balke
Understanding the profound influence of climatic and tectonic histories on adaptation and speciation is a crucial focus in biology research. While voyages like Humboldt’s expedition shaped our understanding of adaptation, the origin of current biodiversity remains unclear – whether it arose in situ or through dispersal from analogous habitats. Situated in the geologically complex Australopacific region, our study focuses on Limbodessus diving beetles (Dytiscidae), a diverse genus distributed from underground aquifers in Western Australia to alpine meadows in New Guinea. Using low-coverage whole-genome sequencing, we established a time-calibrated phylogenetic tree, elucidating Limbodessus’ origin in the mid-late Miocene, most likely in the Sahul continent (i.e., Australia and New Guinea) and western Pacific archipelagos. Our results provide evidence for parallel colonization and speciation at extreme altitudinal ends, driven by aridification in Australia, influencing subterranean colonization, and in situ diversification of alpine taxa by passive-uplifting of local biota in New Guinea. Furthermore, our findings highlight instances of subterranean speciation in isolated underground aquifers, marked by recurrent independent colonizations of this habitat. This study on Limbodessus diving beetles reveals a mid-late Miocene origin in the Sahul region, with arid-driven subterranean speciation in Australia and alpine diversification in New Guinea through passive uplift.
了解气候和构造历史对适应和物种繁衍的深远影响是生物学研究的一个关键重点。洪堡特等人的远征改变了我们对适应性的理解,但目前生物多样性的起源仍不清楚--它是在原地产生的,还是通过从类似栖息地的扩散而产生的。在地质复杂的澳大拉西亚地区,我们的研究重点是Limbodessus潜水甲虫(Dytiscidae),这是一个从西澳大利亚的地下蓄水层到新几内亚的高山草甸都有分布的多样性属。利用低覆盖率的全基因组测序,我们建立了一棵经过时间校准的系统发生树,阐明了Limbodessus起源于中新世中晚期,很可能在撒哈拉大陆(即澳大利亚和新几内亚)和西太平洋群岛。我们的研究结果提供了在极端海拔高度两端平行定殖和物种分化的证据,澳大利亚的干旱化影响了地下定殖,而新几内亚当地生物群的被动上移则影响了高山类群的就地分化。此外,我们的研究结果还突显了孤立的地下含水层中的地下物种分化,其特点是这种栖息地反复出现的独立定殖。
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引用次数: 0
Widespread co-release of glutamate and GABA throughout the mouse brain 谷氨酸和 GABA 在整个小鼠大脑中广泛共同释放。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-13 DOI: 10.1038/s42003-024-07198-y
Cesar C. Ceballos, Lei Ma, Maozhen Qin, Haining Zhong
Several brain neuronal populations transmit both the excitatory and inhibitory neurotransmitters, glutamate, and GABA. However, it remains largely unknown whether these opposing neurotransmitters are co-released simultaneously or are independently transmitted at different times and locations. By recording from acute mouse brain slices, we observed biphasic miniature postsynaptic currents, i.e., minis with time-locked excitatory and inhibitory currents, in striatal spiny projection neurons. This observation cannot be explained by accidental coincidence of monophasic excitatory and inhibitory minis. Interestingly, these biphasic minis could either be an excitatory current leading an inhibitory current or vice versa. Deletion of dopaminergic neurons did not eliminate biphasic minis, indicating that they originate from another source. Importantly, we found that both types of biphasic minis were present in multiple striatal neuronal types and in nine out of ten other brain regions. Overall, co-release of glutamate and GABA appears to be a widespread mode of neurotransmission in the brain. Voltage clamp recording at an intermediate voltage shows that the two opposing neurotransmitters, glutamate and GABA, are co-released by a fraction of synapses in many regions throughout the brain.
有几种大脑神经元同时传递兴奋性和抑制性神经递质--谷氨酸和 GABA。然而,这些对立的神经递质是同时共同释放还是在不同时间和位置独立传递,目前仍是一个未知数。通过记录急性小鼠大脑切片,我们在纹状体棘突投射神经元中观察到了双相微型突触后电流,即具有时间锁定的兴奋性和抑制性电流的微型突触后电流。单相兴奋性和抑制性微型突触后电流的偶然巧合无法解释这一观察结果。有趣的是,这些双相小电流可能是兴奋性电流引导抑制性电流,也可能相反。多巴胺能神经元的缺失并没有消除双相小电流,这表明它们来自另一个来源。重要的是,我们发现这两种类型的双相minis都存在于多种纹状体神经元类型以及其他十个脑区中的九个。总之,谷氨酸和 GABA 的共同释放似乎是大脑中一种广泛的神经传递模式。
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引用次数: 0
Phosphatidic acid directly activates mTOR and then regulates SREBP to promote ganoderic acid biosynthesis under heat stress in Ganoderma lingzhi 磷脂酸直接激活 mTOR,然后调节 SREBP,促进灵芝在热胁迫下的灵芝酸生物合成。
IF 5.2 1区 生物学 Q1 BIOLOGY Pub Date : 2024-11-13 DOI: 10.1038/s42003-024-07225-y
Yong-Nan Liu, Yu-Lin Chen, Zi-Juan Zhang, Feng-Yuan Wu, Hao-Jin Wang, Xiao-Ling Wang, Gao-Qiang Liu
Ganoderic acids (GAs), a class of secondary metabolites produced by the traditional medicinal mushroom Ganoderma, are a group of triterpenoids with superior biological activities. Heat stress (HS) is one of the most important environmental abiotic stresses. Understanding how organisms sense temperature and integrate this information into their metabolism is important for determining how organisms adapt to climate change and for applying this knowledge to breeding. We previously reported that HS induced GA biosynthesis, and phospholipase D (PLD)-mediated phosphatidic acid (PA) was involved in HS-induced GA biosynthesis. We screened a proteome to identify the PA-binding proteins in G. lingzhi. We reported that PA directly interacted with mTOR and positively correlated with the ability of mTOR to promote GA biosynthesis under HS. The PA-activated mTOR pathway promoted the processing of the transcription factor sterol regulatory element-binding protein (SREBP) under HS, which directly activated GA biosynthesis. Our results suggest that SREBP is an intermediate of the PLD-mediated PA-interacting protein mTOR in HS-induced GA biosynthesis. Our report established the link between PLD-mediated PA production and the activation of mTOR and SREBP in the HS response and HS-induced secondary metabolism in filamentous fungi. A study on how organisms sense temperature and integrate this into their metabolism suggests that PLD-mediated PA directly activates mTOR and regulates SREBP to promote the transcription of target genes and GA biosynthesis under heat in G. lingzhi.
灵芝酸(GAs)是由传统药用蘑菇灵芝产生的一类次级代谢产物,是一类具有卓越生物活性的三萜类化合物。热胁迫(HS)是最重要的非生物环境胁迫之一。了解生物如何感知温度并将这一信息整合到其新陈代谢中,对于确定生物如何适应气候变化以及将这一知识应用于育种非常重要。我们以前曾报道过 HS 诱导 GA 的生物合成,而磷脂酶 D(PLD)介导的磷脂酸(PA)参与了 HS 诱导的 GA 生物合成。我们对蛋白质组进行了筛选,以确定灵芝中的 PA 结合蛋白。我们发现 PA 直接与 mTOR 相互作用,并与 mTOR 在 HS 诱导下促进 GA 生物合成的能力呈正相关。PA激活的mTOR通路促进了转录因子甾醇调节元件结合蛋白(SREBP)在HS条件下的加工,从而直接激活了GA的生物合成。我们的研究结果表明,在 HS 诱导的 GA 生物合成过程中,SREBP 是 PLD 介导的 PA 交互蛋白 mTOR 的中间产物。我们的报告建立了 PLD 介导的 PA 产生与 mTOR 和 SREBP 在 HS 响应和 HS 诱导的丝状真菌次生代谢中的激活之间的联系。
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引用次数: 0
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Communications Biology
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